Phylogeography of Diptychus maculatus (Cyprinidae) endemic to the northern margin of the QTP and Tien Shan region.

Abstract:

BACKGROUND:Phylogeography and historical demography of the cyprinid fish Diptychus maculatus (subfamily Schizothoracinae) are evaluated across three river systems in the Northern Qinghai-Tibetan Plateau (QTP) and Tien Shan range: the Indus River, Tarim River and Ili River. RESULTS:Results from both mtDNA (16S rRNA, Cyt b and D-loop) and nucDNA (RAG-2) resolved four reciprocally monophyletic clades, representing populations from Indus River, South Tarim River, North Tarim River and Ili River, respectively. The divergence times was estimated to be 1.5-2.5 Mya. It is consistent with the hypothesis that the split of four clades is the consequence of vicariance resulting from both the intensive uplift of QTP and Tien Shan as well as the resultant expansion of the Taklimakan Desert. Several lines of evidences indicate dynamic demographic histories for the populations, with late Pleistocene and Holocene population bottlenecks and expansions except the Indus River. CONCLUSIONS:Our results clearly depicted the phylogenetic relationship of D. maculatus from Indus River, Tarim River and Ili River. The analyses implicated the relationship among the distribution of D. maculatus, paleo-drainages and geographic events, and implied the existence of the South Tarim River in history.

journal_name

BMC Evol Biol

journal_title

BMC evolutionary biology

authors

Li G,Tang Y,Zhang R,Zhao K

doi

10.1186/s12862-016-0756-3

subject

Has Abstract

pub_date

2016-09-09 00:00:00

pages

186

issn

1471-2148

pii

10.1186/s12862-016-0756-3

journal_volume

16

pub_type

杂志文章
  • Towards a comprehensive characterization of durum wheat landraces in Moroccan traditional agrosystems: analysing genetic diversity in the light of geography, farmers' taxonomy and tetraploid wheat domestication history.

    abstract:BACKGROUND:Crop diversity managed by smallholder farmers in traditional agrosystems is the outcome of historical and current processes interacting at various spatial scales, and influenced by factors such as farming practices and environmental pressures. Only recently have studies started to consider the complexity of ...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-014-0264-2

    authors: Sahri A,Chentoufi L,Arbaoui M,Ardisson M,Belqadi L,Birouk A,Roumet P,Muller MH

    更新日期:2014-12-21 00:00:00

  • Molecular evolution of type VI intermediate filament proteins.

    abstract:BACKGROUND:Tanabin, transitin and nestin are type VI intermediate filament (IF) proteins that are developmentally regulated in frogs, birds and mammals, respectively. Tanabin is expressed in the growth cones of embryonic vertebrate neurons, whereas transitin and nestin are found in myogenic and neurogenic cells. Anothe...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-7-164

    authors: Guérette D,Khan PA,Savard PE,Vincent M

    更新日期:2007-09-13 00:00:00

  • Distribution of events of positive selection and population differentiation in a metabolic pathway: the case of asparagine N-glycosylation.

    abstract:BACKGROUND:Asparagine N-Glycosylation is one of the most important forms of protein post-translational modification in eukaryotes. This metabolic pathway can be subdivided into two parts: an upstream sub-pathway required for achieving proper folding for most of the proteins synthesized in the secretory pathway, and a d...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-12-98

    authors: Dall'Olio GM,Laayouni H,Luisi P,Sikora M,Montanucci L,Bertranpetit J

    更新日期:2012-06-25 00:00:00

  • A phylogeny for the pomatiopsidae (Gastropoda: Rissooidea): a resource for taxonomic, parasitological and biodiversity studies.

    abstract:BACKGROUND:The Pomatiopsidae are reported from northern India into southern China and Southeast Asia, with two sub-families, the Pomatiopsinae (which include freshwater, amphibious, terrestrial and marine species) and the freshwater Triculinae. Both include species acting as intermediate host for species of the blood-f...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-14-29

    authors: Liu L,Huo GN,He HB,Zhou B,Attwood SW

    更新日期:2014-02-18 00:00:00

  • Molecular differentiation of the Murraya paniculata Complex (Rutaceae: Aurantioideae: Aurantieae).

    abstract:BACKGROUND:Orange jasmine has a complex nomenclatural history and is now known as Murraya paniculata (L.) Jack. Our interest in this common ornamental stemmed from the need to resolve its identity and the identities of closely related taxa as hosts of the pathogen 'Candidatus Liberibacter asiaticus' and its vector Diap...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-019-1555-4

    authors: Nguyen CH,Beattie GAC,Haigh AM,Astuti IP,Mabberley DJ,Weston PH,Holford P

    更新日期:2019-12-30 00:00:00

  • High correlation between the turnover of nucleotides under mutational pressure and the DNA composition.

    abstract:BACKGROUND:Any DNA sequence is a result of compromise between the selection and mutation pressures exerted on it during evolution. It is difficult to estimate the relative influence of each of these pressures on the rate of accumulation of substitutions. However, it is important to discriminate between the effect of mu...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-1-13

    authors: Kowalczuk M,Mackiewicz P,Mackiewicz D,Nowicka A,Dudkiewicz M,Dudek MR,Cebrat S

    更新日期:2001-01-01 00:00:00

  • Patch depletion, niche structuring and the evolution of co-operative foraging.

    abstract:BACKGROUND:Many animals live in groups. One proposed reason is that grouping allows cooperative food finding. Group foraging models suggest that grouping could increase food finding rates, but that such group processes could be evolutionarily unstable. These models assume discrete food patches which are fully detectabl...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-11-335

    authors: van der Post DJ,Semmann D

    更新日期:2011-11-17 00:00:00

  • From low to high latitudes: changes in fatty acid desaturation in mammalian fat tissue suggest a thermoregulatory role.

    abstract:BACKGROUND:Most fatty acids (FAs) making up the adipose tissue in mammals have a dietary origin and suffer little modification when they are stored. However, we propose that some of those FAs, specifically those that can be synthesised or modified by mammals, are also being influenced by thermal forces and used as part...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-019-1473-5

    authors: Guerrero AI,Rogers TL

    更新日期:2019-07-26 00:00:00

  • Emergence and evolution of yeast prion and prion-like proteins.

    abstract:BACKGROUND:Prions are transmissible, propagating alternative states of proteins, and are usually made from the fibrillar, beta-sheet-rich assemblies termed amyloid. Prions in the budding yeast Saccharomyces cerevisiae propagate heritable phenotypes, uncover hidden genetic variation, function in large-scale gene regulat...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-016-0594-3

    authors: An L,Fitzpatrick D,Harrison PM

    更新日期:2016-01-25 00:00:00

  • A multi-locus inference of the evolutionary diversification of extant flamingos (Phoenicopteridae).

    abstract:BACKGROUND:Modern flamingos (Phoenicopteridae) occupy a highly specialized ecology unique among birds and represent a potentially powerful model system for informing the mechanisms by which a lineage of birds adapts and radiates. However, despite a rich fossil record and well-studied feeding morphology, molecular inves...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-14-36

    authors: Torres CR,Ogawa LM,Gillingham MA,Ferrari B,van Tuinen M

    更新日期:2014-03-01 00:00:00

  • Geographic parthenogenesis and plant-enemy interactions in the common dandelion.

    abstract:BACKGROUND:Many species with sexual and asexual variants show a pattern of geographic parthenogenesis where asexuals have broader and higher-latitude distribution than sexuals. Because sexual reproduction is often considered a costly evolutionary strategy that is advantageous in the face of selection by coevolving pest...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-13-23

    authors: Verhoeven KJ,Biere A

    更新日期:2013-01-28 00:00:00

  • Heterotachy and long-branch attraction in phylogenetics.

    abstract:BACKGROUND:Probabilistic methods have progressively supplanted the Maximum Parsimony (MP) method for inferring phylogenetic trees. One of the major reasons for this shift was that MP is much more sensitive to the Long Branch Attraction (LBA) artefact than is Maximum Likelihood (ML). However, recent work by Kolaczkowski...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-5-50

    authors: Philippe H,Zhou Y,Brinkmann H,Rodrigue N,Delsuc F

    更新日期:2005-10-06 00:00:00

  • Using the Neandertal genome to study the evolution of small insertions and deletions in modern humans.

    abstract:BACKGROUND:Small insertions and deletions occur in humans at a lower rate compared to nucleotide changes, but evolve under more constraint than nucleotide changes. While the evolution of insertions and deletions have been investigated using ape outgroups, the now available genome of a Neandertal can shed light on the e...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-017-1018-8

    authors: Chintalapati M,Dannemann M,Prüfer K

    更新日期:2017-08-04 00:00:00

  • Histone modification pattern evolution after yeast gene duplication.

    abstract:BACKGROUND:Gene duplication and subsequent functional divergence especially expression divergence have been widely considered as main sources for evolutionary innovations. Many studies evidenced that genetic regulatory network evolved rapidly shortly after gene duplication, thus leading to accelerated expression diverg...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-12-111

    authors: Zou Y,Su Z,Huang W,Gu X

    更新日期:2012-07-09 00:00:00

  • Evolutionary relationships and divergence times among the native rats of Australia.

    abstract:BACKGROUND:The genus Rattus is highly speciose and has a complex taxonomy that is not fully resolved. As shown previously there are two major groups within the genus, an Asian and an Australo-Papuan group. This study focuses on the Australo-Papuan group and particularly on the Australian rats. There are uncertainties r...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-10-375

    authors: Robins JH,McLenachan PA,Phillips MJ,McComish BJ,Matisoo-Smith E,Ross HA

    更新日期:2010-12-02 00:00:00

  • Short-wavelength sensitive opsin (SWS1) as a new marker for vertebrate phylogenetics.

    abstract:BACKGROUND:Vertebrate SWS1 visual pigments mediate visual transduction in response to light at short wavelengths. Due to their importance in vision, SWS1 genes have been isolated from a surprisingly wide range of vertebrates, including lampreys, teleosts, amphibians, reptiles, birds, and mammals. The SWS1 genes exhibit...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-6-97

    authors: van Hazel I,Santini F,Müller J,Chang BS

    更新日期:2006-11-15 00:00:00

  • Recombinational micro-evolution of functionally different metallothionein promoter alleles from Orchesella cincta.

    abstract:BACKGROUND:Metallothionein (mt) transcription is elevated in heavy metal tolerant field populations of Orchesella cincta (Collembola). This suggests that natural selection acts on transcriptional regulation of mt in springtails at sites where cadmium (Cd) levels in soil reach toxic values This study investigates the na...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-7-88

    authors: Janssens TK,Mariën J,Cenijn P,Legler J,van Straalen NM,Roelofs D

    更新日期:2007-06-11 00:00:00

  • Reticulate evolution: frequent introgressive hybridization among Chinese hares (genus lepus) revealed by analyses of multiple mitochondrial and nuclear DNA loci.

    abstract:BACKGROUND:Interspecific hybridization may lead to the introgression of genes and genomes across species barriers and contribute to a reticulate evolutionary pattern and thus taxonomic uncertainties. Since several previous studies have demonstrated that introgressive hybridization has occurred among some species within...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-11-223

    authors: Liu J,Yu L,Arnold ML,Wu CH,Wu SF,Lu X,Zhang YP

    更新日期:2011-07-28 00:00:00

  • Tracing the origin of functional and conserved domains in the human proteome: implications for protein evolution at the modular level.

    abstract:BACKGROUND:The functional repertoire of the human proteome is an incremental collection of functions accomplished by protein domains evolved along the Homo sapiens lineage. Therefore, knowledge on the origin of these functionalities provides a better understanding of the domain and protein evolution in human. The lack ...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-6-91

    authors: Pal LR,Guda C

    更新日期:2006-11-07 00:00:00

  • Phylogeny, structural evolution and functional diversification of the plant PHOSPHATE1 gene family: a focus on Glycine max.

    abstract:BACKGROUND:PHOSPHATE1 (PHO1) gene family members have diverse roles in plant growth and development, and they have been studied in Arabidopsis, rice, and Physcomitrella. However, it has yet to be described in other plants. Therefore, we surveyed the evolutionary patterns of genomes within the plant PHO1 gene family, fo...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-13-103

    authors: He L,Zhao M,Wang Y,Gai J,He C

    更新日期:2013-05-24 00:00:00

  • An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the Arboreal Salamander (Aneides lugubris).

    abstract:BACKGROUND:Phylogeography is an important tool that can be used to reveal cryptic biodiversity and to better understand the processes that promote lineage diversification. We studied the phylogeographic history of the Arboreal Salamander (Aneides lugubris), a wide-ranging species endemic to the California floristic pro...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-015-0524-9

    authors: Reilly SB,Corl A,Wake DB

    更新日期:2015-11-04 00:00:00

  • Phenotypic integration of brain size and head morphology in Lake Tanganyika Cichlids.

    abstract:BACKGROUND:Phenotypic integration among different anatomical parts of the head is a common phenomenon across vertebrates. Interestingly, despite centuries of research into the factors that contribute to the existing variation in brain size among vertebrates, little is known about the role of phenotypic integration in b...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-14-39

    authors: Tsuboi M,Gonzalez-Voyer A,Kolm N

    更新日期:2014-03-04 00:00:00

  • The cyanobacterial endosymbiont of the unicellular algae Rhopalodia gibba shows reductive genome evolution.

    abstract:BACKGROUND:Bacteria occur in facultative association and intracellular symbiosis with a diversity of eukaryotic hosts. Recently, we have helped to characterise an intracellular nitrogen fixing bacterium, the so-called spheroid body, located within the diatom Rhopalodia gibba. Spheroid bodies are of cyanobacterial origi...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-8-30

    authors: Kneip C,Voss C,Lockhart PJ,Maier UG

    更新日期:2008-01-28 00:00:00

  • Genetic diversity, connectivity and gene flow along the distribution of the emblematic Atlanto-Mediterranean sponge Petrosia ficiformis (Haplosclerida, Demospongiae).

    abstract:BACKGROUND:Knowledge about the distribution of the genetic variation of marine species is fundamental to address species conservation and management strategies, especially in scenarios with mass mortalities. In the Mediterranean Sea, Petrosia ficiformis is one of the species most affected by temperature-related disease...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-018-1343-6

    authors: Riesgo A,Taboada S,Pérez-Portela R,Melis P,Xavier JR,Blasco G,López-Legentil S

    更新日期:2019-01-16 00:00:00

  • Similar rates of protein adaptation in Drosophila miranda and D. melanogaster, two species with different current effective population sizes.

    abstract:BACKGROUND:Adaptive protein evolution is common in several Drosophila species investigated. Some studies point to very weak selection operating on amino-acid mutations, with average selection intensities on the order of Nes approximately in D. melanogaster and D. simulans. Species with lower effective population sizes ...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-8-334

    authors: Bachtrog D

    更新日期:2008-12-18 00:00:00

  • Genetic species identification and population structure of Halophila (Hydrocharitaceae) from the Western Pacific to the Eastern Indian Ocean.

    abstract:BACKGROUND:The Indo-Pacific region has the largest number of seagrass species worldwide and this region is considered as the origin of the Hydrocharitaceae. Halophila ovalis and its closely-related species belonging to the Hydrocharitaceae are well-known as a complex taxonomic challenge mainly due to their high morphol...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-14-92

    authors: Nguyen VX,Detcharoen M,Tuntiprapas P,Soe-Htun U,Sidik JB,Harah MZ,Prathep A,Papenbrock J

    更新日期:2014-04-30 00:00:00

  • The relationship of recombination rate, genome structure, and patterns of molecular evolution across angiosperms.

    abstract:BACKGROUND:Although homologous recombination affects the efficacy of selection in populations, the pattern of recombination rate evolution and its effects on genome evolution across plants are largely unknown. Recombination can reduce genome size by enabling the removal of LTR retrotransposons, alter codon usage by GC ...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-015-0473-3

    authors: Tiley GP,Burleigh JG

    更新日期:2015-09-16 00:00:00

  • Spatiotemporal abnormality dynamics of the pale grass blue butterfly: three years of monitoring (2011-2013) after the Fukushima nuclear accident.

    abstract:BACKGROUND:Long-term monitoring of the biological impacts of the radioactive pollution caused by the Fukushima nuclear accident in March 2011 is required to understand what has occurred in organisms living in the polluted areas. Here, we investigated spatial and temporal changes of the abnormality rate (AR) in both fie...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-015-0297-1

    authors: Hiyama A,Taira W,Nohara C,Iwasaki M,Kinjo S,Iwata M,Otaki JM

    更新日期:2015-02-10 00:00:00

  • Accelerated evolutionary rates in tropical and oceanic parmelioid lichens (Ascomycota).

    abstract:BACKGROUND:The rate of nucleotide substitutions is not constant across the Tree of Life, and departures from a molecular clock have been commonly reported. Within parmelioid lichens, the largest group of macrolichens, large discrepancies in branch lengths between clades were found in previous studies. Using an extended...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-8-257

    authors: Lumbsch HT,Hipp AL,Divakar PK,Blanco O,Crespo A

    更新日期:2008-09-22 00:00:00

  • Unique genes in plants: specificities and conserved features throughout evolution.

    abstract:BACKGROUND:Plant genomes contain a high proportion of duplicated genes as a result of numerous whole, segmental and local duplications. These duplications lead up to the formation of gene families, which are the usual material for many evolutionary studies. However, all characterized genomes include single-copy (unique...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-8-280

    authors: Armisén D,Lecharny A,Aubourg S

    更新日期:2008-10-10 00:00:00