Herbihabitans rhizosphaerae gen. nov., sp. nov., a member of the family Pseudonocardiaceae isolated from rhizosphere soil of the herb Limonium sinense (Girard).

abstract：:There is a need for easy, practical, reliable and robust techniques for the identification and classification of bacterial isolates to the species level as alternatives to 16S rRNA gene sequence analysis and DNA-DNA hybridization. Here, we demonstrate that multilocus sequence analysis (MLSA) of housekeeping genes is a...

journal_title：International journal of systematic and evolutionary microbiology

authors： Martens M,Dawyndt P,Coopman R,Gillis M,De Vos P,Willems A

更新日期：2008-01-01 00:00:00

abstract：:A Gram-stain-negative, aerobic, motile with a single polar flagellum, non-spore-forming and rod-shaped bacterial strain named T33T was isolated from forest soil collected at Kyonggi University, South Korea. The strain was catalase- and oxidase-positive, colonies grew on R2A agar at 32 °C. Sequencing of the 16S rRNA ge...

journal_title：International journal of systematic and evolutionary microbiology

authors： Altankhuu K,Kim J

更新日期：2016-09-01 00:00:00

abstract：:One strain of a novel genus and species of the order Planctomycetes, designated FC18T, was isolated from the epiphytic community of Fucusspiralis. This strain was non-pigmented in medium M13 but was slightly pink pigmented on medium M14, containing four-fold the levels of glucose, peptone and yeast extract of M13. The...

journal_title：International journal of systematic and evolutionary microbiology

authors： Lage OM,Albuquerque L,Lobo-da Cunha A,da Costa MS

更新日期：2017-05-01 00:00:00

abstract：:Thirty-nine yeast strains were recovered from a field nest of a primitive and putative novel attine ant species in the genus Myrmicocrypta (Hymenoptera: Formicidae: tribe Attini). Yeasts isolated from the fungus garden and waste deposit included Candida dubliniensis, Candida oleophila, Cryptococcus haglerorum and Hans...

journal_title：International journal of systematic and evolutionary microbiology

authors： Pagnocca FC,Legaspe MFC,Rodrigues A,Ruivo CCC,Nagamoto NS,Bacci M,Forti LC

更新日期：2010-06-01 00:00:00

abstract：:A novel Gram-positive, anaerobic and thermophilic bacterium, strain MET79(T), was isolated from an oil well located in the Gulf of Mexico. Cells were straight rods, motile by a subpolar flagellum. Spores were formed in old cultures. Inner gas vacuoles swelled the cells when exposed to air. The optimum growth condition...

journal_title：International journal of systematic and evolutionary microbiology

authors： Miranda-Tello E,Fardeau ML,Sepúlveda J,Fernández L,Cayol JL,Thomas P,Ollivier B

更新日期：2003-09-01 00:00:00

abstract：:The taxonomy of strain CCUG 55240(T), a Gram-staining-positive, aerobic, endospore-forming bacterium that was isolated from a paper mill, was investigated using a polyphasic approach. In phylogenetic analysis based on 16S rRNA gene sequences, the novel strain was grouped with established members of the genus Paenibaci...

journal_title：International journal of systematic and evolutionary microbiology

authors： Kämpfer P,Falsen E,Lodders N,Martin K,Kassmannhuber J,Busse HJ

更新日期：2012-06-01 00:00:00

abstract：:Novel halophilic, alkalithermophilic, Gram-type-positive bacterial strains were isolated from sediment of alkaline, hypersaline lakes of the Wadi An Natrun, Egypt. Cells of strain JW/NM-WN-LFT were rod-shaped, non-spore-forming and non-motile. Strain JW/NM-WN-LFT grew (at pH55 degrees C 9.5) between 35 and 56 degrees ...

journal_title：International journal of systematic and evolutionary microbiology

authors： Mesbah NM,Hedrick DB,Peacock AD,Rohde M,Wiegel J

更新日期：2007-11-01 00:00:00

abstract：:A strictly aerobic, halotolerant, Gram-stain-negative, rod-shaped bacterium, designated strain DG1253(T), was isolated from a laboratory culture of the marine dinoflagellate Lingulodinium polyedrum (CCAP 1121/2). The strain was able to degrade two- and three-ring polycyclic aromatic hydrocarbons. It exhibited a narrow...

journal_title：International journal of systematic and evolutionary microbiology

authors： Gutierrez T,Green DH,Whitman WB,Nichols PD,Semple KT,Aitken MD

更新日期：2012-11-01 00:00:00

abstract：:A single strain, NR06(T), was isolated from the intestine of a TNF(deltaARE) mouse. Based on phylogenetic analysis of partial 16S rRNA gene sequences, strain NR06(T) belongs in the family Coriobacteriaceae within the Actinobacteria. The most closely related species with validly published names are members of the gener...

journal_title：International journal of systematic and evolutionary microbiology

authors： Clavel T,Charrier C,Wenning M,Haller D

更新日期：2013-07-01 00:00:00

abstract：:Three Gram-stain-positive, rod-to-coccoid-shaped, catalase-positive and non-motile bacterial strains isolated from the choanae of a Northern bald ibis, designated strains 200CHT, W8T and 812CHT, respectively, were subjected to comprehensive taxonomic characterization. The three strains were oxidase-negative. The 16S r...

journal_title：International journal of systematic and evolutionary microbiology

authors： Busse HJ,Kleinhagauer T,Glaeser SP,Spergser J,Kämpfer P,Rückert C

更新日期：2019-09-01 00:00:00

abstract：:The fluorescent amplified fragment length polymorphism (FAFLP) groups A5 (21 isolates), A8 (6 isolates) and A23 (3 isolates) distinguished in an earlier paper (Thompson et al., Syst Appl Microbiol 24, 520-538, 2001) were examined in more depth. These three groups were phylogenetically related to Vibrio tubiashii, but ...

journal_title：International journal of systematic and evolutionary microbiology

authors： Thompson FL,Li Y,Gomez-Gil B,Thompson CC,Hoste B,Vandemeulebroecke K,Rupp GS,Pereira A,De Bem MM,Sorgeloos P,Swings J

更新日期：2003-01-01 00:00:00

abstract：:A Gram-stain-negative, non-motile, non-spore-forming bacterial strain, BDR-9(T), was isolated from soil collected from Boryung on the west coast of the Korean peninsula, and its taxonomic position was investigated by using a polyphasic study. Strain BDR-9(T) grew optimally at 25 °C, at pH 6.0-7.5 and in the absence of...

journal_title：International journal of systematic and evolutionary microbiology

authors： Kang SJ,Jung YT,Oh KH,Oh TK,Yoon JH

更新日期：2011-07-01 00:00:00

abstract：:Three Gram-staining-negative, rod-shaped, non-spore-forming, non-motile, oxidase-positive, yellow pigmented and aerobic bacterial isolates designated 8_R23573, 9_R23581(T) and 10_R23577 were isolated from raw chicken at a broiler processing plant in Bloemfontein, South Africa. A polyphasic taxonomic approach was used ...

journal_title：International journal of systematic and evolutionary microbiology

authors： Charimba G,Jooste P,Albertyn J,Hugo C

更新日期：2013-09-01 00:00:00

abstract：:Two marine stichotrich ciliates, Metaurostylopsis flavicana spec. nov. and Tunicothrix wilberti (Lin & Song, 2004) Xu et al., 2006, isolated from the Shenzhen Mangrove Protection Area on the coast of the South China Sea, were investigated using live observation and protargol impregnation techniques. Metaurostylopsis f...

journal_title：International journal of systematic and evolutionary microbiology

authors： Wang Y,Hu X,Huang J,Al-Rasheid KAS,Warren A

更新日期：2011-07-01 00:00:00

abstract：:Three Gram-stain-negative, rod-shaped bacteria, designated strains NH153T, F-2-11 and M-1-78, were isolated from surface seawater of the South China Sea and the East China Sea. The three isolates were able to grow at 15-45 °C (optimum 28-37 °C), but no growth occurred at 4 or 50 °C. The pH range for growth was pH 5.5-...

journal_title：International journal of systematic and evolutionary microbiology

authors： Yan J,Wu YH,Meng FX,Wang CS,Xiong SL,Zhang XY,Zhang YZ,Xu XW,Zhang DM

更新日期：2016-09-01 00:00:00

abstract：:Two anaerobic, pigmented, non-spore-forming, Gram-stain-negative, rod-shaped strains isolated from the human oral cavity, OMA31(T) and OMA130, were characterized by determining their phenotypic and biochemical features, cellular fatty acid profiles and phylogenetic positions based on 16S rRNA gene sequence analysis. 1...

journal_title：International journal of systematic and evolutionary microbiology

authors： Sakamoto M,Suzuki N,Okamoto M

更新日期：2010-03-01 00:00:00

abstract：:A Gram-stain-negative, non-motile and coccoid, ovoid or rod-shaped bacterial strain, designated P-MA1-7(T), was isolated from a sea squirt (Halocynthia roretzi) collected from the South Sea, Korea. Strain P-MA1-7(T) grew optimally at 25 °C, at pH 7.0-8.0 and in the presence of 2-3% (w/v) NaCl. Phylogenetic analyses ba...

journal_title：International journal of systematic and evolutionary microbiology

authors： Kim YO,Park S,Nam BH,Jung YT,Kim DG,Lee JS,Lee SJ,Yoon JH

更新日期：2013-09-01 00:00:00

abstract：:A novel chemolithoautotrophic and hyperthermophilic member of the genus Ignicoccus was isolated from a submarine hydrothermal system at the Kolbeinsey Ridge, to the north of Iceland. The new isolate showed high similarity to the two species described to date, Ignicoccus islandicus and Ignicoccus pacificus, in its phys...

journal_title：International journal of systematic and evolutionary microbiology

authors： Paper W,Jahn U,Hohn MJ,Kronner M,Näther DJ,Burghardt T,Rachel R,Stetter KO,Huber H

更新日期：2007-04-01 00:00:00

abstract：:In 1994, analyses of clostridial 16S rRNA gene sequences led to the assignment of 18 species to Clostridium cluster XI, separating them from Clostridium sensu stricto (Clostridium cluster I). Subsequently, most cluster XI species have been assigned to the family Peptostreptococcaceae with some species being reassigned...

journal_title：International journal of systematic and evolutionary microbiology

authors： Galperin MY,Brover V,Tolstoy I,Yutin N

更新日期：2016-12-01 00:00:00

abstract：:A halotolerant actinobacterial strain, designated EGI 80423T, was isolated from a desert soil of Xinjiang, north-west China, and subjected to a polyphasic taxonomic characterization. Strain EGI 80423T grew at pH 7.0-10.0 and with 0-14.0% (w/v) NaCl, optimally at pH 8.0-9.0 and with 2.0-4.0% (w/v) NaCl. Cells of strain...

journal_title：International journal of systematic and evolutionary microbiology

authors： Zhang YG,Wang HF,Yang LL,Guo JW,Xiao M,Huang MJ,Nabil Hozzein W,Li WJ

更新日期：2016-04-01 00:00:00

abstract：:Three strains were isolated from cultured aquatic organisms. They were Gram-negative, oxidase-positive, motile, fermentative, arginine dihydrolase-positive, lysine and ornithine decarboxylase-negative and sensitive to vibriostatic agent O/129. These strains differ from other related Vibrio species by several phenotypi...

journal_title：International journal of systematic and evolutionary microbiology

authors： Gomez-Gil B,Thompson FL,Thompson CC,Swings J

更新日期：2003-09-01 00:00:00

abstract：:A Gram-stain-negative, rod-shaped (0.2-0.3×1.0-2.4 µm), catalase-positive, oxidase-negative and non-motile bacterium, designated strain RZ26T, was isolated from the marine red algae collected from the coast of Weihai, PR China. Growth of strain RZ26T occurred at 15-33 °C (optimum, 25-28 °C), pH 6.0-9.5 (optimum, pH 7....

journal_title：International journal of systematic and evolutionary microbiology

authors： Zhang JY,Xia Y,Feng X,Mu DS,Du ZJ

更新日期：2020-06-01 00:00:00

abstract：:Strain MD5T, an aerobic marine alphaproteobacterium, was isolated from Mediterranean seawater at Malvarrosa beach, Valencia, Spain. The strain was characterized in a polyphasic study and was placed phylogenetically within the Roseobacter clade in the family Rhodobacteraceae. Phylogenetic analysis based on 16S rRNA gen...

journal_title：International journal of systematic and evolutionary microbiology

authors： Lucena T,Pujalte MJ,Ruvira MA,Garay E,Macián MC,Arahal DR

更新日期：2012-04-01 00:00:00

abstract：:Electrophoretic karyotypes of 15 type strains of the taxa in the Candida guilliermondii complex including Candida fukuyamaensis Nakase et al. and Candida xestobii Yarrow et S. A. Meyer were comparatively analysed by using the CHEF (contour-clamped homogeneous electric field) method of PFGE. Eighteen strains (isolated ...

journal_title：International journal of systematic and evolutionary microbiology

authors： Bai FY,Liang HY,Jia JH

更新日期：2000-01-01 00:00:00

abstract：:Forty strains isolated from soil taken from a hay meadow were assigned to the genus Dactylosporangium on the basis of colonial properties. 16S rRNA gene sequence analysis showed that the isolates formed a group that was most closely related to the type strain of Dactylosporangium aurantiacum, but well separated from o...

journal_title：International journal of systematic and evolutionary microbiology

authors： Kim BY,Stach JEM,Weon HY,Kwon SW,Goodfellow M

更新日期：2010-08-01 00:00:00

abstract：:A Gram-negative, aerobic, non-motile, rod-shaped bacterium, designated MS1-4T, was isolated from mangrove sediment of the Jiulong River Estuary, Fujian Province, China. The isolate formed yellow colonies on ZB 2216E agar. Optimal growth was observed at pH 6.0, at 34 °C and in the presence of 4 % (w/v) NaCl. Strain MS1...

journal_title：International journal of systematic and evolutionary microbiology

authors： Ma H,Ren H,Huang L,Luo Y

更新日期：2018-07-01 00:00:00

abstract：:A novel, mesophilic, Gram-negative bacterium was isolated from an anaerobic digestor for municipal wastewater. The bacterium degraded adipate in the presence of sulfate, sulfite, thiosulfate and elemental sulfur. (E)-2-Hexenedioate accumulated transiently in the degradation of adipate. (E)-2-Hexenedioate, (E)-3-hexene...

journal_title：International journal of systematic and evolutionary microbiology

authors： Tanaka K,Stackebrandt E,Tohyama S,Eguchi T

更新日期：2000-03-01 00:00:00

abstract：:A novel actinobacterium, designated strain CFH S0261T, was isolated from a sediment sample of the Yellow River. The taxonomic position of the strain was investigated by using a polyphasic approach. Cells of strain CFH S0261T were Gram-reaction-positive, aerobic, non-motile. Growth occurs at 15-37 °C, pH 6.0-8.0 and wi...

journal_title：International journal of systematic and evolutionary microbiology

authors： Niu MM,Ming H,Cheng LJ,Zhao ZL,Ji WL,Li M,Yi BF,Xia TT,Nie GX

更新日期：2020-05-01 00:00:00

abstract：:Thirty-two protein-encoding genes that are distributed widely among bacterial genomes were tested for the potential usefulness of their DNA sequences in assigning bacterial strains to species. From publicly available data, it was possible to make 49 pairwise comparisons of whole bacterial genomes that were related at ...

journal_title：International journal of systematic and evolutionary microbiology

authors： Zeigler DR

更新日期：2003-11-01 00:00:00

abstract：:The taxonomic position of a yellow-pigmented bacterial strain, designated DS20T, isolated from a hexachlorocyclohexane dump site at Lucknow, India was determined based on a polyphasic taxonomic characterization. A neighbour-joining tree based on 16S rRNA gene sequences showed that strain DS20T occupied a distinct phyl...

journal_title：International journal of systematic and evolutionary microbiology

authors： Kumari H,Gupta SK,Jindal S,Katoch P,Lal R

更新日期：2009-09-01 00:00:00