Prediction of bacterial associations with plants using a supervised machine-learning approach.

abstract：:The aromatic hydrocarbon naphthalene, which occurs in coal and oil, can be degraded by aerobic or anaerobic microorganisms. A wide-spread electron acceptor for the latter is sulfate. Evidence for in situ naphthalene degradation stems in particular from the detection of 2-naphthoate and [5,6,7,8]-tetrahydro-2-naphthoat...

journal_title：Environmental microbiology

authors： Chen G,Widdel F,Musat F

更新日期：2020-09-01 00:00:00

abstract：:The study of prokaryotic diversity has blossomed during the last 10-15 years as a result of the introduction of molecular identification, mostly based on direct 16S rRNA gene polymerase chain reaction (PCR) amplification and sequencing from natural samples. A large amount of information exists about the diversity of t...

journal_title：Environmental microbiology

authors： Rodríguez-Valera F

更新日期：2002-11-01 00:00:00

abstract：:Butyrate-producing bacteria play an important role in the human colon, supplying energy to the gut epithelium and regulating host cell responses. In order to explore the diversity and culturability of this functional group, we designed degenerate primers to amplify butyryl-CoA:acetate CoA-transferase sequences from fa...

journal_title：Environmental microbiology

authors： Louis P,Young P,Holtrop G,Flint HJ

更新日期：2010-02-01 00:00:00

abstract：:Environmental variation can have profound and direct effects on fitness, fecundity, and host-symbiont interactions. Replication rates of microbes within arthropod hosts, for example, are correlated with incubation temperature but less is known about the influence of host-symbiont dynamics on environmental preference. ...

journal_title：Environmental microbiology

authors： Truitt AM,Kapun M,Kaur R,Miller WJ

更新日期：2018-07-03 00:00:00

abstract：:Enhanced biological phosphorus removal (EBPR) exploits the metabolism of polyphosphate-accumulating organisms (PAOs) to remove excess phosphorus (P) from wastewater treatment. Candidatus Accumulibacter phosphatis (Accumulibacter) is the most abundant and well-studied PAO in EBPR systems. In a previous study, we detect...

journal_title：Environmental microbiology

authors： Watson SJ,Needoba JA,Peterson TD

更新日期：2019-04-01 00:00:00

abstract：:In order to study the effect of different chloroethenes (electron acceptors) on the bacterial composition of dechlorinating communities, two reductive dechlorinating enrichment cultures were developed that were able to reduce trichloroethene (TCE) and cis-1,2-dichloroethene (cis-DCE) to ethene using hydrogen as electr...

journal_title：Environmental microbiology

authors： Gu AZ,Hedlund BP,Staley JT,Strand SE,Stensel HD

更新日期：2004-01-01 00:00:00

abstract：:Methanogenesis was characterized in hypersaline microbial mats from Guerrero Negro, Baja California Sur, Mexico both in situ and after long-term manipulation in a greenhouse environment. Substrate addition experiments indicate methanogenesis to occur primarily through the catabolic demethylation of non-competitive sub...

journal_title：Environmental microbiology

authors： Smith JM,Green SJ,Kelley CA,Prufert-Bebout L,Bebout BM

更新日期：2008-02-01 00:00:00

abstract：:In this study, the putative role of phenazines and rhamnolipid-biosurfactants, antagonistic metabolites produced by Pseudomonas aeruginosa PNA1, was tested in the biological control of Pythium splendens on bean (Phaseolus vulgaris L) and Pythium myriotylum on cocoyam (Xanthosoma sagittifolium L Schott). A rhamnolipid-...

journal_title：Environmental microbiology

authors： Perneel M,D'hondt L,De Maeyer K,Adiobo A,Rabaey K,Höfte M

更新日期：2008-03-01 00:00:00

abstract：:Cultivation-independent surveys of ribosomal RNA genes have revealed the existence of novel microbial lineages, many with no known cultivated representatives. Ribosomal RNA-based analyses, however, often do not provide significant information beyond phylogenetic affiliation. Analysis of large genome fragments recovere...

journal_title：Environmental microbiology

authors： Béjà O,Suzuki MT,Koonin EV,Aravind L,Hadd A,Nguyen LP,Villacorta R,Amjadi M,Garrigues C,Jovanovich SB,Feldman RA,DeLong EF

更新日期：2000-10-01 00:00:00

abstract：:Traditionally, organisms responsible for major biogeochemical cycling processes have been determined by physiological characterization of environmental isolates in laboratory culture. Molecular techniques have, however, confirmed the widespread occurrence of abundant bacterial and archaeal groups with no cultivated re...

journal_title：Environmental microbiology

authors： Prosser JI,Nicol GW

更新日期：2008-11-01 00:00:00

abstract：:Microbial communities in natural ecosystems are subject to strong ecological rules. The study of local communities along a regional metacommunity can reveal patterns of community assembly, and disentangle the underlying ecological processes. In particular, we seek drivers of community assembly at the regional scale us...

journal_title：Environmental microbiology

authors： Ortiz-Álvarez R,Cáliz J,Camarero L,Casamayor EO

更新日期：2020-01-01 00:00:00

abstract：:Symbiotic associations between microbes and invertebrates have resulted in some of the most unusual physiological and morphological adaptations that have evolved in the animal world. We document a new symbiosis between marine polychaetes of the genus Osedax and members of the bacterial group Oceanospirillales, known f...

journal_title：Environmental microbiology

authors： Goffredi SK,Orphan VJ,Rouse GW,Jahnke L,Embaye T,Turk K,Lee R,Vrijenhoek RC

更新日期：2005-09-01 00:00:00

abstract：:Siderophores are chelators with extremely strong affinity for ferric iron and are best known for their capacity to feed microorganisms with this metal. Despite their preference for iron, they can also chelate numerous other metals with variable affinities. There is also increasing evidence that metals other than iron ...

journal_title：Environmental microbiology

authors： Schalk IJ,Hannauer M,Braud A

更新日期：2011-11-01 00:00:00

abstract：:Contaminated soils are subject to diurnal and seasonal temperature variations during on-site ex-situ bioremediation processes. We assessed how diurnal temperature variations similar to that in summer at the site from which petroleum hydrocarbon-contaminated soil was collected affect the soil microbial community and th...

journal_title：Environmental microbiology

authors： Akbari A,Ghoshal S

更新日期：2015-12-01 00:00:00

abstract：:Obligate acidophilic members of the thaumarchaeotal genus Candidatus Nitrosotalea play an important role in nitrification in acidic soils, but their evolutionary and physiological adaptations to acidic environments are still poorly understood, with only a single member of this genus (Ca. N. devanaterra) having its gen...

journal_title：Environmental microbiology

authors： Herbold CW,Lehtovirta-Morley LE,Jung MY,Jehmlich N,Hausmann B,Han P,Loy A,Pester M,Sayavedra-Soto LA,Rhee SK,Prosser JI,Nicol GW,Wagner M,Gubry-Rangin C

更新日期：2017-12-01 00:00:00

abstract：:The Crc protein is a global regulator that has a key role in catabolite repression and optimization of metabolism in Pseudomonads. Crc inhibits gene expression post-transcriptionally, preventing translation of mRNAs bearing an AAnAAnAA motif [the catabolite activity (CA) motif] close to the translation start site. Alt...

journal_title：Environmental microbiology

authors： Moreno R,Hernández-Arranz S,La Rosa R,Yuste L,Madhushani A,Shingler V,Rojo F

更新日期：2015-01-01 00:00:00

abstract：:Pseudomonas aeruginosa is a Gram-negative opportunistic pathogen that infects immunocompromised patients and trauma victims and causes fatal lung infections in people with cystic fibrosis. This microorganism produces a number of virulence factors, one of which is lipopolysaccharide (LPS), which has been shown to media...

journal_title：Environmental microbiology

authors： Daniels C,Griffiths C,Cowles B,Lam JS

更新日期：2002-12-01 00:00:00

abstract：:Bacterial degradation of polycyclic aromatic hydrocarbons (PAHs), ubiquitous contaminants from oil and coal, is typically limited by poor accessibility of the contaminant to the bacteria. In order to measure PAH availability in complex systems, we designed a number of diffusion-based assays with a double-tagged bacter...

journal_title：Environmental microbiology

authors： Tecon R,Binggeli O,van der Meer JR

更新日期：2009-09-01 00:00:00

abstract：:Nostoc flagelliforme is well known for its strong ecological adaptability in inhabiting desert biological soil crusts. However, the mechanism of its recovery from quiescent to active state after prolonged dormancy remains poorly characterized. Especially how exoproteome be related to the adaptive strategies and partic...

journal_title：Environmental microbiology

authors： Wang B,Yang J,Xu C,Yi L,Wan C

更新日期：2020-04-01 00:00:00

abstract：:To determine if different algal viruses (Phycodnaviridae) share common patterns of seasonal abundance, quantitative PCR methods were developed and applied to monitor the abundances of three different viruses in Lake Ontario, Canada over 13 months. Throughout the year, the abundances of two different phycodnavirus polB...

journal_title：Environmental microbiology

authors： Short SM,Short CM

更新日期：2009-10-01 00:00:00

abstract：:The influence of geographic distribution and type of habitat on the molecular epidemiology of ciprofloxacin resistant Escherichia coli was investigated. Ciprofloxacin resistant E. coli from wastewater, urban water with faecal contamination and faeces of gulls, pigeons and birds of prey, from Portugal, Spain and Sweden...

journal_title：Environmental microbiology

authors： Vredenburg J,Varela AR,Hasan B,Bertilsson S,Olsen B,Narciso-da-Rocha C,Bonnedahl J,Stedt J,Da Costa PM,Manaia CM

更新日期：2014-04-01 00:00:00

abstract：:The microbial consumption of nitrous oxide (N2O) has gained great interest since it was revealed that this process could mitigate the greenhouse effect of N2O. The consumption of N2O results from its reduction to dinitrogen gas (N2) as part of the denitrification process. However, there is ongoing debate regarding an ...

journal_title：Environmental microbiology

authors： Desloover J,Roobroeck D,Heylen K,Puig S,Boeckx P,Verstraete W,Boon N

更新日期：2014-10-01 00:00:00

abstract：:Substrate supply and protist grazing are two of the most important forces that determine the composition and properties of bacterial assemblages. General ecological theory predicts that the relative importance of these factors is changing with the environmental productivity. In the present study, the interplay between...

journal_title：Environmental microbiology

authors： Corno G,Jürgens K

更新日期：2008-10-01 00:00:00

abstract：:Wide-spread abundance in soil and water, coupled with high toxicity have put arsenic at the top of the list of environmental contaminants. Early studies demonstrated that both concentration and the valence state of inorganic arsenic (arsenite, As(III) vs. arsenate As(V)) can be modulated by microbes. Using genetics, t...

journal_title：Environmental microbiology

authors： Tokmina-Lukaszewska M,Shi Z,Tripet B,McDermott TR,Copié V,Bothner B,Wang G

更新日期：2017-02-01 00:00:00

abstract：:Continent-scale biogeography has been extensively studied in soils and marine systems, but little is known about biogeographical patterns in non-marine sediments. We used barcode pyrosequencing to quantify the effects of local geochemical properties and geographic distance for bacterial community structure and members...

journal_title：Environmental microbiology

authors： Xiong J,Liu Y,Lin X,Zhang H,Zeng J,Hou J,Yang Y,Yao T,Knight R,Chu H

更新日期：2012-09-01 00:00:00

abstract：:Bacillus anthracis, Bacillus cereus and Bacillus thuringiensis have been described as members of the Bacillus cereus group but are, in fact, one species. B. anthracis is a mammal pathogen, B. thuringiensis an entomopathogen and B. cereus a ubiquitous soil bacterium and an occasional human pathogen. In two clinical iso...

journal_title：Environmental microbiology

authors： Mignot T,Denis B,Couture-Tosi E,Kolstø AB,Mock M,Fouet A

更新日期：2001-08-01 00:00:00

abstract：:Over the last 15 years classical culturing and environmental PCR techniques have revealed a modest number of genuinely new major lineages of protists; however, some new groups have greatly influenced our understanding of eukaryote evolution. We used culturing techniques to examine the diversity of free-living protists...

journal_title：Environmental microbiology

authors： Kolisko M,Silberman JD,Cepicka I,Yubuki N,Takishita K,Yabuki A,Leander BS,Inouye I,Inagaki Y,Roger AJ,Simpson AG

更新日期：2010-10-01 00:00:00

abstract：:Insects and nematodes represent the most species-rich animal taxa and they occur together in a variety of associations. Necromenic nematodes of the genus Pristionchus are found on scarab beetles with more than 30 species known from worldwide samplings. However, little is known about the dynamics and succession of nema...

journal_title：Environmental microbiology

authors： Meyer JM,Baskaran P,Quast C,Susoy V,Rödelsperger C,Glöckner FO,Sommer RJ

更新日期：2017-04-01 00:00:00

abstract：:Biological membranes have evolved different mechanisms to modify their composition in response to chemical stimuli in a process called 'homeoviscous adaptation'. Among these mechanisms, modifications in the ratio of saturated/unsaturated fatty acids and in cis/trans fatty acid isomers, cyclopropanation and changes in ...

journal_title：Environmental microbiology

authors： Bernal P,Muñoz-Rojas J,Hurtado A,Ramos JL,Segura A

更新日期：2007-05-01 00:00:00

abstract：:To determine whether the distribution of estuarine ammonia-oxidizing bacteria (AOB) was influenced by salinity, the community structure of betaproteobacterial ammonia oxidizers (AOB) was characterized along a salinity gradient in sediments of the Ythan estuary, on the east coast of Scotland, UK, by denaturant gradient...

journal_title：Environmental microbiology

authors： Freitag TE,Chang L,Prosser JI

更新日期：2006-04-01 00:00:00