Genome analysis of quorum sensing Cedecea neteri SSMD04 leads to identification of its novel signaling synthase (cneI), cognate receptor (cneR) and an orphan receptor.

abstract：:[This corrects the article DOI: 10.7717/peerj.4736.]. ...

journal_title：PeerJ

authors： Regaiolli B,Spiezio C,Hopkins WD

更新日期：2018-08-23 00:00:00

abstract：:Trees in the Morus genera belong to the Moraceae family. To better understand the species status of genus Morus and to provide information for studies on evolutionary biology within the genus, the complete chloroplast (cp) genomes of M. cathayana and M. multicaulis were sequenced. The plastomes of the two species are ...

journal_title：PeerJ

authors： Kong WQ,Yang JH

更新日期：2017-03-08 00:00:00

abstract：:The MYB transcription factor family is one of the largest gene families playing regulatory roles in plant growth and development. The MYB family has been studied in a variety of plant species but has not been reported in Taxus chinensis. Here we identified 72 putative R2R3-MYB genes in T. chinensis using a comprehensi...

journal_title：PeerJ

authors： Hu X,Zhang L,Wilson I,Shao F,Qiu D

更新日期：2020-02-17 00:00:00

abstract：Background & Aims:Endothelial precursor cell (EPC) dysfunction is one of the risk factors for diabetes mellitus (DM) which results in delayed wound healing. Rosiglitazone (RSG) is a frequently prescribed oral glucose-lowering drug. Previous studies have shown the positive effects of RSG on ameliorating EPC dysfunction ...

journal_title：PeerJ

authors： Zhou G,Han X,Wu Z,Shi Q,Bao X

更新日期：2019-10-17 00:00:00

abstract：:Non-invasive measurements of glucocorticoid (GC) concentrations, including cortisol and corticosterone, serve as reliable indicators of adrenocortical activities and physiological stress loads in a variety of species. As an alternative to invasive analyses based on plasma, GC concentrations in saliva still represent s...

journal_title：PeerJ

authors： Nemeth M,Pschernig E,Wallner B,Millesi E

更新日期：2016-01-18 00:00:00

abstract：:The Natural Mortality coefficient (M) is a key parameter for stock assessments. The need to establish age-specific natural mortality coefficients is widely recognized because M decreases rapidly over the early stages of the life cycle until it reaches a stable M value around the age-at-maturity. The aim of this study ...

journal_title：PeerJ

authors： Romero-Gallardo S,Velázquez-Abunader I,López-Rocha JA,Garza-Gisholt E

更新日期：2018-07-18 00:00:00

abstract：Background:Current and future changes in rainfall amount and frequency may particularly impact annual plants in desert ecosystems. The winter annual Echinops gmelinii Turcz. is widely distributed in the desert habitats of northern China and is a dominant pioneer annual plant following sand stabilization in the Tengger ...

journal_title：PeerJ

authors： Wang Y,Li X,Liu L,Zhao J,Sun J

更新日期：2019-11-29 00:00:00

abstract：:Arbuscular mycorrhizal fungi (AMF) colonization, sampled at 32-50 days post-inoculation (dpi), was significantly reduced in suppressor of prosystemin-mediated responses2 (spr2) mutant tomato plants impaired in the ω-3 FATTY ACID DESATURASE7 (FAD7) gene that limits the generation of linolenic acid and, consequently, th...

journal_title：PeerJ

authors： Casarrubias-Castillo K,Montero-Vargas JM,Dabdoub-González N,Winkler R,Martinez-Gallardo NA,Zañudo-Hernández J,Avilés-Arnaut H,Délano-Frier JP

更新日期：2020-04-16 00:00:00

abstract：BACKGROUND:The rice receptor kinase XA21 confers robust resistance to the bacterial pathogen Xanthomonas oryzaepv. oryzae(Xoo). We previously reported that XA21 is cleaved in transgenic plants overexpressing XA21 with a GFP tag (Ubi-XA21-GFP) and that the released C-terminal domain is localized to the nucleus. XA21 car...

journal_title：PeerJ

authors： Wei T,Chen TC,Ho YT,Ronald PC

更新日期：2016-10-05 00:00:00

abstract：:Changes in soil bacterial communities, which are crucial for the assessment of ecological restoration in Chinese plantations, have never been studied in the "Three North Shelterbelt" project in the semi-arid areas. We used high-throughput sequencing of the 16S rDNA gene to investigate the soil bacterial community dive...

journal_title：PeerJ

authors： Deng J,Zhang Y,Yin Y,Zhu X,Zhu W,Zhou Y

更新日期：2019-06-25 00:00:00

abstract：:Parrotfish are fundamental species in controlling algal phase-shifts and ensuring the resilience of coral reefs. Nevertheless, little is known on their ecological role in the south-western Atlantic Ocean. The present study analysed the ontogenetic foraging activity and feeding selectivity of the Brazilian endemic parr...

journal_title：PeerJ

authors： Pereira PH,Santos M,Lippi DL,Silva P

更新日期：2016-10-12 00:00:00

abstract：:Although the existence of coral-reef habitats at depths to 165 m in tropical regions has been known for decades, the richness, diversity, and ecological importance of mesophotic coral ecosystems (MCEs) has only recently become widely acknowledged. During an interdisciplinary effort spanning more than two decades, we c...

journal_title：PeerJ

authors： Pyle RL,Boland R,Bolick H,Bowen BW,Bradley CJ,Kane C,Kosaki RK,Langston R,Longenecker K,Montgomery A,Parrish FA,Popp BN,Rooney J,Smith CM,Wagner D,Spalding HL

更新日期：2016-10-04 00:00:00

abstract：:Climatic variables have been the main predictors employed in ecological niche modeling and species distribution modeling, although biotic interactions are known to affect species' spatial distributions via mechanisms such as predation, competition, and mutualism. Biotic interactions can affect species' responses to ab...

journal_title：PeerJ

authors： Simões MVP,Peterson AT

更新日期：2018-12-05 00:00:00

abstract：BACKGROUND:Individuals with unilateral lower limb amputation have a high risk of developing knee osteoarthritis (OA) in their intact limb as they age. This risk may be related to joint loading experienced earlier in life. We hypothesized that loading during walking would be greater in the intact limb of young US milita...

journal_title：PeerJ

authors： Miller RH,Krupenevich RL,Pruziner AL,Wolf EJ,Schnall BL

更新日期：2017-02-02 00:00:00

abstract：:The recent publication of a number of high resolution bacterial voltage-gated sodium channel structures has opened the door for the mechanisms employed by these channels to distinguish between ions to be elucidated. The way these channels select between Na(+) and K(+) has been investigated in computational studies, bu...

journal_title：PeerJ

authors： Corry B

更新日期：2013-02-12 00:00:00

abstract：:Urmia Lake, the largest natural habitat of the brine shrimp Artemia urmiana, has progressively desiccated over the last two decades, resulting in a loss of 80% of its surface area and producing thousands of hectares of arid salty land. This ecological crisis has seriously affected the lake's native biodiversity. Artem...

journal_title：PeerJ

authors： Asem A,Eimanifar A,van Stappen G,Sun SC

更新日期：2019-07-02 00:00:00

abstract：:The vibrating reed frequency meter, originally employed by Békésy and later by Wilson as a cochlear model, uses a set of tuned reeds to represent the cochlea's graded bank of resonant elements and an elastic band threaded between them to provide nearest-neighbour coupling. Here the system, constructed of 21 reeds prog...

journal_title：PeerJ

authors： Bell A,Wit HP

更新日期：2015-10-13 00:00:00

abstract：:Antibiotic resistance in our pathogens is medicine's climate change: caused by human activity, and resulting in more extreme outcomes. Resistance emerges in microbial populations when antibiotics act on phenotypic variance within the population. This can arise from either genotypic diversity (resulting from a mutation...

journal_title：PeerJ

authors： Kurenbach B,Hill AM,Godsoe W,van Hamelsveld S,Heinemann JA

更新日期：2018-10-12 00:00:00

abstract：:Bovine odorant-binding protein (bOBP) differs from other lipocalins by lacking the conserved disulfide bond and for being able to form the domain-swapped dimers. To identify structural features responsible for the formation of the bOBP unique dimeric structure and to understand the role of the domain swapping on maint...

journal_title：PeerJ

authors： Stepanenko OV,Roginskii DO,Stepanenko OV,Kuznetsova IM,Uversky VN,Turoverov KK

更新日期：2016-04-18 00:00:00

abstract：:Natural products from the unique environments of sea water and oceans represent a largely unfamiliar source for isolation of new microbes, which are potent producers of secondary bioactive metabolites. These unique life-forms from the marine ecosphere have served as an important source of drugs since ancient times and...

journal_title：PeerJ

authors： Adnan M,Alshammari E,Patel M,Amir Ashraf S,Khan S,Hadi S

更新日期：2018-06-27 00:00:00

abstract：:Natural and anthropogenic changes (e.g., land use change, pollution) will alter many environmental factors in the coming years, including the amount of solar radiation reaching the earth's surface. Alterations in solar radiation exposure is likely to impact the ecologies of many living organisms, including invertebrat...

journal_title：PeerJ

authors： Villena OC,Momen B,Sullivan J,Leisnham PT

更新日期：2018-12-18 00:00:00

abstract：:While studying organisms living in association with the solitary tunicate Phallusia nigra (Ascidiacea, Ascidiidae) from a shallow fringing reef at Zeytouna Beach (Egyptian Red Sea), one of the collected ascidians showed peculiar perforations on its tunic. Once dissected, the perforations revealed to be the openings of...

journal_title：PeerJ

authors： Martin D,Nygren A,Cruz-Rivera E

更新日期：2017-06-01 00:00:00

abstract：:Cordycepin is a component of the extract obtained from Cordyceps militaris and has many biological activities, including anti-cancer, anti-metastatic and anti-inflammatory effects. Intervertebral disc degeneration (IDD) is a degenerative disease that is closely related to the inflammation of nucleus pulposus (NP) cell...

journal_title：PeerJ

authors： Li Y,Li K,Mao L,Han X,Zhang K,Zhao C,Zhao J

更新日期：2016-05-10 00:00:00

abstract：BACKGROUND:As one of the highest forest ecosystems in the world, Polylepis forests are recognized both as center of endemism and diversity along the Andes and as an ecosystem under serious threat from habitat loss, fragmentation, and climate change due to human activities. Effective conservation efforts are limited, in...

journal_title：PeerJ

authors： Sevillano-Ríos CS,Rodewald AD

更新日期：2017-04-27 00:00:00

abstract：:Miniature inverted-repeat transposable elements (MITEs) have been associated with genic regions in plant genomes and may play important roles in the regulation of nearby genes via recruitment of small RNAs (sRNA) to the MITEs loci. We identified eight families of MITEs in the sugarcane genome assembly with MITE-Hunter...

journal_title：PeerJ

authors： Grativol C,Thiebaut F,Sangi S,Montessoro P,Santos WDS,Hemerly AS,Ferreira PCG

更新日期：2019-01-11 00:00:00

abstract：:There is growing concern that some bee populations are in decline, potentially threatening pollination security in agricultural and non-agricultural landscapes. Among the numerous causes associated with this trend, nutritional stress resulting from a mismatch between bee nutritional needs and plant community provision...

journal_title：PeerJ

authors： Pamminger T,Becker R,Himmelreich S,Schneider CW,Bergtold M

更新日期：2019-02-27 00:00:00

abstract：:LIMKi 3 is a specific selective LIMK inhibitor against LIMK1 and LIMK2, while LIMK1 and LIMK2 are the main regulators of actin cytoskeleton to participate in many cell activities. However, the effect of LIMKi 3 in porcine oocyte meiosis is still unclear. The present study was designed to investigate the effects of LIM...

journal_title：PeerJ

authors： Jia RX,Duan X,Song SJ,Sun SC

更新日期：2016-10-12 00:00:00

abstract：:The blacklegged tick Ixodes scapularis is widely distributed in the United States and transmits multiple pathogens to humans, wildlife and domestic animals. Recently, several novel viruses in the family Bunyaviridae (South Bay virus (SBV) and Blacklegged tick phlebovirus (BTPV)) were identified infecting female I. sca...

journal_title：PeerJ

authors： Sakamoto JM,Ng TFF,Suzuki Y,Tsujimoto H,Deng X,Delwart E,Rasgon JL

更新日期：2016-08-11 00:00:00

abstract：:Long-term streamflow datasets inevitably include gaps, which must be filled to allow estimates of runoff and ultimately catchment water budgets. Uncertainty introduced by filling gaps in discharge records is rarely, if ever, reported. We characterized the uncertainty due to streamflow gaps in a reference watershed at ...

journal_title：PeerJ

authors： See CR,Green MB,Yanai RD,Bailey AS,Campbell JL,Hayward J

更新日期：2020-07-21 00:00:00

abstract：:While there have been increasing numbers of reports of human-wolf conflict in China during recent years, little is known about the nature of this conflict. In this study, we used questionnaires and semi-structured interviews to investigate local villagers' perceptions of wolves in Jiuzhaigou County, western China. We ...

journal_title：PeerJ

authors： Xu Y,Yang B,Dou L

更新日期：2015-06-09 00:00:00