The human colostrum whey proteome is altered in gestational diabetes mellitus.

Abstract:

:Proteomics of human milk has been used to identify the comprehensive cargo of proteins involved in immune and cellular function. Very little is known about the effects of gestational diabetes mellitus (GDM) on lactation and breast milk components. The objective of the current study was to examine the effect of GDM on the expression of proteins in the whey fraction of human colostrum. Colostrum was collected from women who were diagnosed with (n = 6) or without (n = 12) GDM at weeks 24-28 in pregnancy. Colostral whey was analyzed for protein abundances using high-resolution, high-mass accuracy liquid chromatography tandem mass spectrometry. A total of 601 proteins were identified, of which 260 were quantified using label free spectral counting. Orthogonal partial least-squares discriminant analysis identified 27 proteins that best predict GDM. The power law global error model corrected for multiple testing was used to confirm that 10 of the 27 proteins were also statistically significantly different between women with versus without GDM. The identified changes in protein expression suggest that diabetes mellitus during pregnancy has consequences on human colostral proteins involved in immunity and nutrition.

journal_name

J Proteome Res

authors

Grapov D,Lemay DG,Weber D,Phinney BS,Azulay Chertok IR,Gho DS,German JB,Smilowitz JT

doi

10.1021/pr500818d

subject

Has Abstract

pub_date

2015-01-02 00:00:00

pages

512-20

issue

1

eissn

1535-3893

issn

1535-3907

journal_volume

14

pub_type

杂志文章
  • A new fast method for nanoLC-MALDI-TOF/TOF-MS analysis using monolithic columns for peptide preconcentration and separation in proteomic studies.

    abstract::A new fast method for identification and characterization of proteolytic digests of proteins by monolithic liquid chromatography coupled with mass spectrometry has been developed. The advantages of the monolithic columns are a high-pressure stability and low back pressure resulting in higher flow rates for capillary o...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr060406w

    authors: Marcus K,Schäfer H,Klaus S,Bunse C,Swart R,Meyer HE

    更新日期:2007-02-01 00:00:00

  • Metabolic Mechanism for l-Leucine-Induced Metabolome To Eliminate Streptococcus iniae.

    abstract::Crucial metabolites that modulate hosts' metabolome to eliminate bacterial pathogens have been documented, but the metabolic mechanisms are largely unknown. The present study explores the metabolic mechanism for l-leucine-induced metabolome to eliminate Streptococcus iniae in tilapia. GC-MS-based metabolomics was used...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00944

    authors: Du CC,Yang MJ,Li MY,Yang J,Peng B,Li H,Peng XX

    更新日期:2017-05-05 00:00:00

  • Optimization of Search Engines and Postprocessing Approaches to Maximize Peptide and Protein Identification for High-Resolution Mass Data.

    abstract::The two key steps for analyzing proteomic data generated by high-resolution MS are database searching and postprocessing. While the two steps are interrelated, studies on their combinatory effects and the optimization of these procedures have not been adequately conducted. Here, we investigated the performance of thre...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00536

    authors: Tu C,Sheng Q,Li J,Ma D,Shen X,Wang X,Shyr Y,Yi Z,Qu J

    更新日期:2015-11-06 00:00:00

  • Process and Workflow for Preparation of Disparate Mouse Tissues for Proteomic Analysis.

    abstract::We investigated the effect of homogenization strategy and protein precipitation on downstream protein quantitation using multiple reaction monitoring mass spectrometry (MRM-MS). Our objective was to develop a workflow capable of processing disparate tissue types with high throughput, minimal variability, and maximum p...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00399

    authors: Michaud SA,Pětrošová H,Jackson AM,McGuire JC,Sinclair NJ,Ganguly M,Flenniken AM,Nutter LMJ,McKerlie C,Schibli D,Smith D,Borchers CH

    更新日期:2021-01-01 00:00:00

  • Francisella tularensis LVS surface and membrane proteins as targets of effective post-exposure immunization for tularemia.

    abstract::Francisella tularensis causes disease (tularemia) in a large number of mammals, including man. We previously demonstrated enhanced efficacy of conventional antibiotic therapy for tularemia by postexposure passive transfer of immune sera developed against a F. tularensis LVS membrane protein fraction (MPF). However, th...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr500628k

    authors: Chandler JC,Sutherland MD,Harton MR,Molins CR,Anderson RV,Heaslip DG,Bosio CM,Belisle JT

    更新日期:2015-02-06 00:00:00

  • Systems Biology Reveals NS4B-Cyclophilin A Interaction: A New Target to Inhibit YFV Replication.

    abstract::Yellow fever virus (YFV) replication is highly dependent on host cell factors. YFV NS4B is reported to be involved in viral replication and immune evasion. Here interactions between NS4B and human proteins were determined using a GST pull-down assay and analyzed using 1-DE and LC-MS/MS. We present a total of 207 prote...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00933

    authors: Vidotto A,Morais AT,Ribeiro MR,Pacca CC,Terzian AC,Gil LH,Mohana-Borges R,Gallay P,Nogueira ML

    更新日期:2017-04-07 00:00:00

  • Comparative proteomic analysis of primary schwann cells and a spontaneously immortalized schwann cell line RSC 96: a comprehensive overview with a focus on cell adhesion and migration related proteins.

    abstract::Schwann cells (SCs) are the principal glial cells of the peripheral nervous system (PNS). As a result of tissue heterogeneity and difficulties in the isolation and culture of primary SCs, a considerable understanding of SC biology is obtained from SC lines. However, the differences between the primary SCs and SC lines...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr201221u

    authors: Ji Y,Shen M,Wang X,Zhang S,Yu S,Chen G,Gu X,Ding F

    更新日期:2012-06-01 00:00:00

  • Comparative proteomics of pulmonary tumors with neuroendocrine differentiation.

    abstract::We aimed to evaluate neuroendocrine pulmonary tumors (NEPT) by a novel method involving map tree construction by comparing all of the protein spots. We performed a proteomics analysis to assess the similarities in protein expression between neuroendocrine pulmonary tumors (NEPT), including typical carcinoids (TC), aty...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr050460x

    authors: Cho NH,Koh ES,Lee DW,Kim H,Choi YP,Cho SH,Kim DS

    更新日期:2006-03-01 00:00:00

  • Probing Protein Interaction Networks by Combining MS-Based Proteomics and Structural Data Integration.

    abstract::Protein-protein interactions play a major role in the molecular machinery of life, and various techniques such as AP-MS are dedicated to their identification. However, those techniques return lists of proteins devoid of organizational structure, not detailing which proteins interact with which others. Proposing a hier...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00066

    authors: Postic G,Marcoux J,Reys V,Andreani J,Vandenbrouck Y,Bousquet MP,Mouton-Barbosa E,Cianférani S,Burlet-Schiltz O,Guerois R,Labesse G,Tufféry P

    更新日期:2020-07-02 00:00:00

  • Identification of proteins from non-model organisms using mass spectrometry: application to a hibernating mammal.

    abstract::A major challenge in the life sciences is the extraction of detailed molecular information from plants and animals that are not among the handful of exhaustively studied "model organisms." As a consequence, certain species with novel phenotypes are often ignored due to the lack of searchable databases, tractable genet...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr050306a

    authors: Russeth KP,Higgins L,Andrews MT

    更新日期:2006-04-01 00:00:00

  • Global Analysis of Protein Lysine Succinylation Profiles and Their Overlap with Lysine Acetylation in the Marine Bacterium Vibrio parahemolyticus.

    abstract::Protein lysine acylation, including acetylation and succinylation, has been found to be a major post-translational modification (PTM) and is associated with the regulation of cellular processes that are widespread in bacteria. Vibrio parahemolyticus is a model marine bacterium that causes seafood-borne illness in huma...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00485

    authors: Pan J,Chen R,Li C,Li W,Ye Z

    更新日期:2015-10-02 00:00:00

  • Different residues in channel turret determining the selectivity of ADWX-1 inhibitor peptide between Kv1.1 and Kv1.3 channels.

    abstract::The low selectivity of Kv1 peptide inhibitors for specific isoforms makes them poor candidates for the development of theraputics. Using combined approaches, we showed that the Kv1 turret is the critical determinant for ADWX-1 peptide inhibitor selectivity of Kv1.3 over Kv1.1. Mutation of Kv1.1 turret residues to matc...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800494a

    authors: Yin SJ,Jiang L,Yi H,Han S,Yang DW,Liu ML,Liu H,Cao ZJ,Wu YL,Li WX

    更新日期:2008-11-01 00:00:00

  • The MetaProteomeAnalyzer: a powerful open-source software suite for metaproteomics data analysis and interpretation.

    abstract::The enormous challenges of mass spectrometry-based metaproteomics are primarily related to the analysis and interpretation of the acquired data. This includes reliable identification of mass spectra and the meaningful integration of taxonomic and functional meta-information from samples containing hundreds of unknown ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr501246w

    authors: Muth T,Behne A,Heyer R,Kohrs F,Benndorf D,Hoffmann M,Lehtevä M,Reichl U,Martens L,Rapp E

    更新日期:2015-03-06 00:00:00

  • Dual-source mass spectrometer with MALDI-LIT-ESI configuration.

    abstract::A novel linear ion trap (LIT) mass spectrometer with dual matrix-assisted laser desorption/ionization (MALDI) and electrospray ionization (ESI) ionization sources has been built in the MALDI-LIT-ESI configuration. The design features two independent ion source/ion optical channels connected to opposite ends of a singl...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr060514i

    authors: Smith SA,Blake TA,Ifa DR,Cooks RG,Ouyang Z

    更新日期:2007-02-01 00:00:00

  • Probity: a protein identification algorithm with accurate assignment of the statistical significance of the results.

    abstract::An algorithm for protein identification based on mass spectrometric proteolytic peptide mapping and genome database searching is presented. The algorithm ranks database proteins based on direct calculation of the probability of random matching and assigns the statistical significance to each result. We investigate the...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr034048y

    authors: Eriksson J,Fenyö D

    更新日期:2004-01-01 00:00:00

  • Proteomic signatures uncover hydrogen peroxide and nitric oxide cross-talk signaling network in citrus plants.

    abstract::Hydrogen peroxide (H(2)O(2)) and nitric oxide ((•)NO) elicit numerous processes in plants. However, our knowledge of H(2)O(2) and (•)NO-responsive proteins is limited. The present study aimed to identify proteins whose accumulation levels were regulated by these signaling molecules in citrus leaves. To address this qu...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100782h

    authors: Tanou G,Job C,Belghazi M,Molassiotis A,Diamantidis G,Job D

    更新日期:2010-11-05 00:00:00

  • Analysis of oxygen/glucose-deprivation-induced changes in SUMO3 conjugation using SILAC-based quantitative proteomics.

    abstract::Transient cerebral ischemia dramatically activates small ubiquitin-like modifier (SUMO2/3) conjugation. In cells exposed to 6 h of transient oxygen/glucose deprivation (OGD), a model of ischemia, SUMOylation increases profoundly between 0 and 30 min following re-oxygenation. To elucidate the effect of transient OGD on...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr200834f

    authors: Yang W,Thompson JW,Wang Z,Wang L,Sheng H,Foster MW,Moseley MA,Paschen W

    更新日期:2012-02-03 00:00:00

  • Aptamer microarray mediated capture and mass spectrometry identification of biomarker in serum samples.

    abstract::Sensitive detection of molecular biomarkers in clinical samples is crucially important in disease diagnostics. This paper reports the development of an aptamer microarray platform combined with sol-gel technology to identify low-abundance targets in complex serum samples. Because of the nanoporous structure of the sol...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100300t

    authors: Ahn JY,Lee SW,Kang HS,Jo M,Lee DK,Laurell T,Kim S

    更新日期:2010-11-05 00:00:00

  • Characterization of the Interactome of the Porcine Reproductive and Respiratory Syndrome Virus Nonstructural Protein 2 Reveals the Hyper Variable Region as a Binding Platform for Association with 14-3-3 Proteins.

    abstract::Porcine reproductive and respiratory syndrome virus (PRRSV) is a major threat to the swine industry worldwide and hence global food security, exacerbated by a newly emerged highly pathogenic (HP-PRRSV) strain from China. PRRSV nonstructural protein 2 (nsp2) is a multifunctional polypeptide with strain-dependent influe...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00396

    authors: Xiao Y,Wu W,Gao J,Smith N,Burkard C,Xia D,Zhang M,Wang C,Archibald A,Digard P,Zhou EM,Hiscox JA

    更新日期:2016-05-06 00:00:00

  • 1H NMR To Evaluate the Metabolome of Bronchoalveolar Lavage Fluid (BALf) in Bronchiolitis Obliterans Syndrome (BOS): Toward the Development of a New Approach for Biomarker Identification.

    abstract::This report describes the application of NMR spectroscopy to the profiling of metabolites in bronchoalveolar lavage fluid (BALf) of lung transplant recipients without bronchiolitis obliterans syndrome (BOS) (stable, S, n = 10), and with BOS at different degrees of severity (BOS 0p, n = 10; BOS I, n = 10). Through the ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b01038

    authors: Ciaramelli C,Fumagalli M,Viglio S,Bardoni AM,Piloni D,Meloni F,Iadarola P,Airoldi C

    更新日期:2017-04-07 00:00:00

  • Proteomic analysis and identification of the structural and regulatory proteins of the Rhodobacter capsulatus gene transfer agent.

    abstract::The gene transfer agent of Rhodobacter capsulatus (GTA) is a unique phage-like particle that exchanges genetic information between members of this same species of bacterium. Besides being an excellent tool for genetic mapping, the GTA has a number of advantages for biotechnological and nanoengineering purposes. To fac...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr8006045

    authors: Chen F,Spano A,Goodman BE,Blasier KR,Sabat A,Jeffery E,Norris A,Shabanowitz J,Hunt DF,Lebedev N

    更新日期:2009-02-01 00:00:00

  • (1)H NMR Spectroscopy of Fecal Extracts Enables Detection of Advanced Colorectal Neoplasia.

    abstract::Colorectal cancer (CRC) is a growing cause of mortality in developing countries, warranting investigation into its etiopathogenesis and earlier diagnosis. Here, we investigated the fecal metabolic phenotype of patients with advanced colorectal neoplasia and controls using (1)H-nuclear magnetic resonance (NMR) spectros...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00277

    authors: Amiot A,Dona AC,Wijeyesekera A,Tournigand C,Baumgaertner I,Lebaleur Y,Sobhani I,Holmes E

    更新日期:2015-09-04 00:00:00

  • Quantitative Proteomic Approaches for Analysis of Protein S-Nitrosylation.

    abstract::S-Nitrosylation is a redox-based post-translational modification of a protein in response to nitric oxide (NO) signaling, and it participates in a variety of processes in diverse biological systems. The significance of this type of protein modification in health and diseases is increasingly recognized. In the central ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章,评审

    doi:10.1021/acs.jproteome.5b00857

    authors: Qu Z,Greenlief CM,Gu Z

    更新日期:2016-01-04 00:00:00

  • Standardized protocols for quality control of MRM-based plasma proteomic workflows.

    abstract::Mass spectrometry (MS)-based proteomics is rapidly emerging as a viable technology for the identification and quantitation of biological samples, such as human plasma--the most complex yet commonly employed biofluid in clinical analyses. The transition from a qualitative to quantitative science is required if proteomi...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr300893w

    authors: Percy AJ,Chambers AG,Smith DS,Borchers CH

    更新日期:2013-01-04 00:00:00

  • Proteomic analysis of laser microdissected melanoma cells from skin organ cultures.

    abstract::Gaining insights into the molecular events that govern the progression from melanoma in situ to advanced melanoma and understanding how the local microenvironment at the melanoma site influences this progression are two clinically pivotal aspects that to date are largely unexplored. In an effort to identify key regula...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100164x

    authors: Hood BL,Grahovac J,Flint MS,Sun M,Charro N,Becker D,Wells A,Conrads TP

    更新日期:2010-07-02 00:00:00

  • Computational and Mass-Spectrometry-Based Workflow for the Discovery and Validation of Missing Human Proteins: Application to Chromosomes 2 and 14.

    abstract::In the framework of the C-HPP, our Franco-Swiss consortium has adopted chromosomes 2 and 14, coding for a total of 382 missing proteins (proteins for which evidence is lacking at protein level). Over the last 4 years, the French proteomics infrastructure has collected high-quality data sets from 40 human samples, incl...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr5010345

    authors: Carapito C,Lane L,Benama M,Opsomer A,Mouton-Barbosa E,Garrigues L,Gonzalez de Peredo A,Burel A,Bruley C,Gateau A,Bouyssié D,Jaquinod M,Cianferani S,Burlet-Schiltz O,Van Dorsselaer A,Garin J,Vandenbrouck Y

    更新日期:2015-09-04 00:00:00

  • A method for investigating protein-protein interactions related to salmonella typhimurium pathogenesis.

    abstract::We successfully modified an existing method to investigate protein-protein interactions in the pathogenic bacterium Salmonella enterica serovar Typhimurium (Salmonella Typhimurium). This method includes (i) addition of a histidine-biotin-histidine tag to the bait proteins via recombinant DNA techniques, (ii) in vivo c...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr800865d

    authors: Chowdhury SM,Shi L,Yoon H,Ansong C,Rommereim LM,Norbeck AD,Auberry KJ,Moore RJ,Adkins JN,Heffron F,Smith RD

    更新日期:2009-03-01 00:00:00

  • Statistical validation of peptide identifications in large-scale proteomics using the target-decoy database search strategy and flexible mixture modeling.

    abstract::Reliable statistical validation of peptide and protein identifications is a top priority in large-scale mass spectrometry based proteomics. PeptideProphet is one of the computational tools commonly used for assessing the statistical confidence in peptide assignments to tandem mass spectra obtained using database searc...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr7006818

    authors: Choi H,Ghosh D,Nesvizhskii AI

    更新日期:2008-01-01 00:00:00

  • Proteomic analysis of human serum by two-dimensional differential gel electrophoresis after depletion of high-abundant proteins.

    abstract::Two-dimensional differential gel electrophoresis (2-D DIGE) was used to analyze human serum following the removal of albumin and five other high-abundant serum proteins. After protein removal, serum was analyzed by SDS-PAGE as a preliminary screen, and significant differences between four high-abundant protein removal...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr049921p

    authors: Chromy BA,Gonzales AD,Perkins J,Choi MW,Corzett MH,Chang BC,Corzett CH,McCutchen-Maloney SL

    更新日期:2004-11-01 00:00:00

  • Identification of novel protein biomarkers of preterm birth in human cervical-vaginal fluid.

    abstract::Spontaneous preterm birth (SPTB) is a major contributor to perinatal morbidity and mortality. However, the diagnosis of preterm labor (PTL) that leads to preterm birth is difficult, and there is a pressing need for improved diagnosis. We utilized multidimensional liquid chromatography-tandem mass spectrometry (LC/LC-M...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr0605421

    authors: Pereira L,Reddy AP,Jacob T,Thomas A,Schneider KA,Dasari S,Lapidus JA,Lu X,Rodland M,Roberts CT Jr,Gravett MG,Nagalla SR

    更新日期:2007-04-01 00:00:00