Comparative proteomic analysis of primary schwann cells and a spontaneously immortalized schwann cell line RSC 96: a comprehensive overview with a focus on cell adhesion and migration related proteins.

Abstract:

:Schwann cells (SCs) are the principal glial cells of the peripheral nervous system (PNS). As a result of tissue heterogeneity and difficulties in the isolation and culture of primary SCs, a considerable understanding of SC biology is obtained from SC lines. However, the differences between the primary SCs and SC lines remain uncertain. In the present study, quantitative proteomic analysis based on isobaric tags for relative and absolute quantitation (iTRAQ) labeling was conducted to obtain an unbiased view of the proteomic profiles of primary rat SCs and RSC96, a spontaneously immortalized rat SC line. Out of 1757 identified proteins (FDR < 1%), 1702 were quantified, while 61 and 78 were found to be, respectively, up- or down-regulated (90% confidence interval) in RSC96. Bioinformatics analysis indicated the unique features of spontaneous immortalization, illustrated the dedifferentiated state of RSC96, and highlighted a panel of novel proteins associated with cell adhesion and migration including CADM4, FERMT2, and MCAM. Selected proteomic data and the requirement of these novel proteins in SC adhesion and migration were properly validated. Taken together, our data collectively revealed proteome differences between primary SCs and RSC96, validated several differentially expressed proteins with potential biological significance, and generated a database that may serve as a useful resource for studies of SC biology and pathology.

journal_name

J Proteome Res

authors

Ji Y,Shen M,Wang X,Zhang S,Yu S,Chen G,Gu X,Ding F

doi

10.1021/pr201221u

subject

Has Abstract

pub_date

2012-06-01 00:00:00

pages

3186-98

issue

6

eissn

1535-3893

issn

1535-3907

journal_volume

11

pub_type

杂志文章
  • Integrative transcriptome and proteome study to identify the signaling network regulated by POPX2 phosphatase.

    abstract::POPX2 is a serine/threonine phosphatase belonging to the protein phosphatase 2C (PP2C) family that has been found to be elevated in invasive breast cancer cells. Silencing of POPX2 results in lower cell motility and invasiveness. The molecular mechanism of POPX2-regulated cell motility is not well understood. To ident...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr301113c

    authors: Zhang S,Guo T,Chan H,Sze SK,Koh CG

    更新日期:2013-06-07 00:00:00

  • Comparison of the membrane proteome of virulent Mycobacterium tuberculosis and the attenuated Mycobacterium bovis BCG vaccine strain by label-free quantitative proteomics.

    abstract::The Mycobacterium tuberculosis membrane is rich in antigens that are potential targets for diagnostics and the development of new vaccines. To better understand the mechanisms underlying MTB virulence and identify new targets for therapeutic intervention, we investigated the differential composition of membrane proteo...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400334k

    authors: Gunawardena HP,Feltcher ME,Wrobel JA,Gu S,Braunstein M,Chen X

    更新日期:2013-12-06 00:00:00

  • Subcellular proteomics reveals a role for nucleo-cytoplasmic trafficking at the DNA replication origin activation checkpoint.

    abstract::Depletion of DNA replication initiation factors such as CDC7 kinase triggers the origin activation checkpoint in healthy cells and leads to a protective cell cycle arrest at the G1 phase of the mitotic cell division cycle. This protective mechanism is thought to be defective in cancer cells. To investigate how this ch...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr3010919

    authors: Mulvey CM,Tudzarova S,Crawford M,Williams GH,Stoeber K,Godovac-Zimmermann J

    更新日期:2013-03-01 00:00:00

  • Quantitative analysis of signaling networks across differentially embedded tumors highlights interpatient heterogeneity in human glioblastoma.

    abstract::Glioblastoma multiforme (GBM) is the most aggressive malignant primary brain tumor, with a dismal mean survival even with the current standard of care. Although in vitro cell systems can provide mechanistic insight into the regulatory networks governing GBM cell proliferation and migration, clinical samples provide a ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr500418w

    authors: Johnson H,White FM

    更新日期:2014-11-07 00:00:00

  • Intrinsic disorder in nuclear hormone receptors.

    abstract::Many proteins possess intrinsic disorder (ID) and lack a rigid three-dimensional structure in at least part of their sequence. ID has been hypothesized to influence protein-protein and protein-ligand interactions. We calculated ID for nearly 400 vertebrate and invertebrate members of the biomedically important nuclear...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr8003024

    authors: Krasowski MD,Reschly EJ,Ekins S

    更新日期:2008-10-01 00:00:00

  • Proteomic Investigation of Ram Spermatozoa and the Proteins Conferred by Seminal Plasma.

    abstract::Sperm proteomes have emerged for several species; however, the extent of species similarity is unknown. Sheep are an important agricultural species for which a comprehensive sperm proteome has not been produced. In addition, potential proteomic factors from seminal plasma that may contribute to improved fertility afte...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00530

    authors: Pini T,Leahy T,Soleilhavoup C,Tsikis G,Labas V,Combes-Soia L,Harichaux G,Rickard JP,Druart X,de Graaf SP

    更新日期:2016-10-07 00:00:00

  • Comprehensive Examination of the Mouse Lung Metabolome Following Mycobacterium tuberculosis Infection Using a Multiplatform Mass Spectrometry Approach.

    abstract::The mechanisms whereby Mycobacterium tuberculosis (Mtb) rewires the host metabolism in vivo are surprisingly unexplored. Here, we used three high-resolution mass spectrometry platforms to track altered lung metabolic changes associated with Mtb infection of mice. The multiplatform data sets were merged using consensus...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00868

    authors: Fernández-García M,Rey-Stolle F,Boccard J,Reddy VP,García A,Cumming BM,Steyn AJC,Rudaz S,Barbas C

    更新日期:2020-05-01 00:00:00

  • Quantitative Proteomics Analysis Confirmed Oxidative Metabolism Predominates in Streptomyces coelicolor versus Glycolytic Metabolism in Streptomyces lividans.

    abstract::Recent physiological studies indicated that S. lividans metabolism was mainly glycolytic, whereas S. coelicolor metabolism was mainly oxidative. To determine whether such metabolic characteristics were correlated with consistent proteomics features, a comparative label-free, shotgun proteomics analysis of these strain...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.7b00163

    authors: Millan-Oropeza A,Henry C,Blein-Nicolas M,Aubert-Frambourg A,Moussa F,Bleton J,Virolle MJ

    更新日期:2017-07-07 00:00:00

  • On-line LC-MS approach combining collision-induced dissociation (CID), electron-transfer dissociation (ETD), and CID of an isolated charge-reduced species for the trace-level characterization of proteins with post-translational modifications.

    abstract::We have expanded our recent on-line LC-MS platform for large peptide analysis to combine collision-induced dissociation (CID), electron-transfer dissociation (ETD), and CID of an isolated charge-reduced (CRCID) species derived from ETD to determine sites of phosphorylation and glycosylation modifications, as well as t...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr070313u

    authors: Wu SL,Hühmer AF,Hao Z,Karger BL

    更新日期:2007-11-01 00:00:00

  • Quantitative proteome analyses identify PrfA-responsive proteins and phosphoproteins in Listeria monocytogenes.

    abstract::Protein phosphorylation is a major mechanism of signal transduction in bacteria. Here, we analyzed the proteome and phosphoproteome of a wild-type strain of the food-borne pathogen Listeria monocytogenes that was grown in either chemically defined medium or rich medium containing glucose. We then compared these result...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr500929u

    authors: Misra SK,Moussan Désirée Aké F,Wu Z,Milohanic E,Cao TN,Cossart P,Deutscher J,Monnet V,Archambaud C,Henry C

    更新日期:2014-12-05 00:00:00

  • Human Metabolome Changes after a Single Dose of 3,4-Methylenedioxymethamphetamine (MDMA) with Special Focus on Steroid Metabolism and Inflammation Processes.

    abstract::The intake of 3,4-methylenedioxymethamphetamine (MDMA) is known to increase several endogenous substances involved in steroid and inflammation pathways. Untargeted metabolomics screening approaches can determine biochemical changes after drug exposure and can reveal new pathways, which might be involved in the pharmac...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.8b00438

    authors: Boxler MI,Streun GL,Liechti ME,Schmid Y,Kraemer T,Steuer AE

    更新日期:2018-08-03 00:00:00

  • Proteomic analysis of hepatitis C virus (HCV) core protein transfection and host regulator PA28γ knockout in HCV pathogenesis: a network-based study.

    abstract::Hepatitis C virus (HCV) causes chronic liver disease worldwide. HCV Core protein (Core) forms the viral capsid and is crucial for HCV pathogenesis and HCV-induced hepatocellular carcinoma, through its interaction with the host factor proteasome activator PA28γ. Here, using BD-PowerBlot high-throughput Western array, w...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr300121a

    authors: Tripathi LP,Kambara H,Moriishi K,Morita E,Abe T,Mori Y,Chen YA,Matsuura Y,Mizuguchi K

    更新日期:2012-07-06 00:00:00

  • Online multidimensional separation with biphasic monolithic capillary column for shotgun proteome analysis.

    abstract::A biphasic monolithic capillary column with 10 cm segment of strong-cation exchange monolith and 65 cm segment of reversed-phase monolith was prepared within a single 100 microm i.d. capillary. Separation performance of this column was evaluated by a five-cycle online multidimensional separation of 10 microg tryptic d...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr700562b

    authors: Wang F,Dong J,Ye M,Jiang X,Wu R,Zou H

    更新日期:2008-01-01 00:00:00

  • Relative Abundance of apoE and Aβ1-42 Associated with Abnormal Prion Protein Differs between Creutzfeldt-Jakob Disease Subtypes.

    abstract::Aggregated and protease-resistant mammalian prion protein (PrPSc) is the primary protein component of infectious prions. Enriched PrPSc preparations are often used to study the mechanisms that underly prion disease. However, most enrichment procedures are relatively nonspecific and tend to yield significant amounts of...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00633

    authors: Moore RA,Choi YP,Head MW,Ironside JW,Faris R,Ritchie DL,Zanusso G,Priola SA

    更新日期:2016-12-02 00:00:00

  • Enhanced Validation of Antibodies Enables the Discovery of Missing Proteins.

    abstract::The localization of proteins at a tissue- or cell-type-specific level is tightly linked to the protein function. To better understand each protein's role in cellular systems, spatial information constitutes an important complement to quantitative data. The standard methods for determining the spatial distribution of p...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00486

    authors: Sivertsson Å,Lindström E,Oksvold P,Katona B,Hikmet F,Vuu J,Gustavsson J,Sjöstedt E,von Feilitzen K,Kampf C,Schwenk JM,Uhlén M,Lindskog C

    更新日期:2020-12-04 00:00:00

  • Comparison of CRISPR Genomic Tagging for Affinity Purification and Endogenous Immunoprecipitation Coupled with Quantitative Mass Spectrometry To Identify the Dynamic AMPKα2 Interactome.

    abstract::Recent advances in genome editing technologies have enabled the insertion of epitope tags at endogenous loci with relative efficiency. We describe an approach for investigation of protein interaction dynamics of the AMP-activated kinase complex AMPK using a catalytic subunit AMPKα2 (PRKAA2 gene) as the bait, based on ...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.9b00378

    authors: Stein BD,Herzig S,Martínez-Bartolomé S,Lavallée-Adam M,Shaw RJ,Yates JR 3rd

    更新日期:2019-10-04 00:00:00

  • Secretome Analysis of Lipid-Induced Insulin Resistance in Skeletal Muscle Cells by a Combined Experimental and Bioinformatics Workflow.

    abstract::Skeletal muscle has emerged as an important secretory organ that produces so-called myokines, regulating energy metabolism via autocrine, paracrine, and endocrine actions; however, the nature and extent of the muscle secretome has not been fully elucidated. Mass spectrometry (MS)-based proteomics, in principle, allows...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00720

    authors: Deshmukh AS,Cox J,Jensen LJ,Meissner F,Mann M

    更新日期:2015-11-06 00:00:00

  • Screening of Chemical Modifications in Human Skin Keratins by Mass Spectrometry-Based Proteomic Analysis via Noninvasive Sampling and On-Tape Digestion.

    abstract::Proteins are continuously exposed to diverse chemical stresses, and the resulting chemical modifications can provide significant information on biological events. Keratins are the main constituent of human skin and are the major target proteins of various chemical modifications. We have previously developed a mass spe...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.0c00406

    authors: Lee SH,Kawase J,Hiroshima Y,Oe T

    更新日期:2020-09-04 00:00:00

  • Network-Based Analysis on Orthogonal Separation of Human Plasma Uncovers Distinct High Density Lipoprotein Complexes.

    abstract::High density lipoprotein (HDL) particles are blood-borne complexes whose plasma levels have been associated with protection from cardiovascular disease (CVD). Recent studies have demonstrated the existence of distinct HDL subspecies; however, these have been difficult to isolate and characterize biochemically. Here, w...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.5b00419

    authors: Li H,Gordon SM,Zhu X,Deng J,Swertfeger DK,Davidson WS,Lu LJ

    更新日期:2015-08-07 00:00:00

  • Selective Affinity Enrichment of Nitrotyrosine-Containing Peptides for Quantitative Analysis in Complex Samples.

    abstract::Protein tyrosine nitration by oxidative and nitrate stress is important in the pathogenesis of many inflammatory or aging-related diseases. Mass spectrometry analysis of protein nitrotyrosine is very challenging because the non-nitrated peptides suppress the signals of the low-abundance nitrotyrosine (NT) peptides. No...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.7b00275

    authors: Zhao Y,Zhang Y,Sun H,Maroto R,Brasier AR

    更新日期:2017-08-04 00:00:00

  • Large-scale identification of Caenorhabditis elegans proteins by multidimensional liquid chromatography-tandem mass spectrometry.

    abstract::A proteome of a model organism, Caenorhabditis elegans, was analyzed by an integrated liquid chromatography (LC)-based protein identification system, which was constructed by microscale two-dimensional liquid chromatography (2DLC) coupled with electrospray ionization (ESI) tandem mass spectrometry (MS/MS) on a high-re...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr025551y

    authors: Mawuenyega KG,Kaji H,Yamuchi Y,Shinkawa T,Saito H,Taoka M,Takahashi N,Isobe T

    更新日期:2003-01-01 00:00:00

  • Metabolomic Fingerprinting in Various Body Fluids of a Diet-Controlled Clinical Smoking Cessation Study Using a Validated GC-TOF-MS Metabolomics Platform.

    abstract::Untargeted GC-TOF-MS analysis proved to be a suitable analytical platform to determine alterations in the metabolic profile. Several metabolic pathways were found to be altered in a first clinical study comparing smokers against nonsmokers. Subsequently, we conducted a clinical diet-controlled study to investigate alt...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.7b00128

    authors: Goettel M,Niessner R,Mueller D,Scherer M,Scherer G,Pluym N

    更新日期:2017-10-06 00:00:00

  • Combined transcriptomic-(1)H NMR metabonomic study reveals that monoethylhexyl phthalate stimulates adipogenesis and glyceroneogenesis in human adipocytes.

    abstract::Adipose tissue is a major storage site for lipophilic environmental contaminants. The environmental metabolic disruptor hypothesis postulates that some pollutants can promote obesity or metabolic disorders by activating nuclear receptors involved in the control of energetic homeostasis. In this context, monoethylhexyl...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr200765v

    authors: Ellero-Simatos S,Claus SP,Benelli C,Forest C,Letourneur F,Cagnard N,Beaune PH,de Waziers I

    更新日期:2011-12-02 00:00:00

  • Insight into the salivary transcriptome and proteome of Dipetalogaster maxima.

    abstract::Dipetalogaster maxima is a blood-sucking Hemiptera that inhabits sylvatic areas in Mexico. It usually takes its blood meal from lizards, but following human population growth, it invaded suburban areas, feeding also on humans and domestic animals. Hematophagous insect salivary glands produce potent pharmacologic compo...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr100866h

    authors: Assumpção TC,Charneau S,Santiago PB,Francischetti IM,Meng Z,Araújo CN,Pham VM,Queiroz RM,de Castro CN,Ricart CA,Santana JM,Ribeiro JM

    更新日期:2011-02-04 00:00:00

  • Mass spectrometric analysis of the phosphorylation levels of the SWI/SNF chromatin remodeling/tumor suppressor proteins ARID1A and Brg1 in ovarian clear cell adenocarcinoma cell lines.

    abstract::Protein phosphorylation is one of the major factors involved in tumor progression and malignancy. We performed exploratory studies aimed at identifying phosphoproteins characteristic to cell lines derived from ovarian clear cell adenocarcinoma (CCA), a highly malignant type of ovarian cancer. Comparative phosphoproteo...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr500470h

    authors: Kimura A,Arakawa N,Hirano H

    更新日期:2014-11-07 00:00:00

  • IDPQuantify: combining precursor intensity with spectral counts for protein and peptide quantification.

    abstract::Differentiating and quantifying protein differences in complex samples produces significant challenges in sensitivity and specificity. Label-free quantification can draw from two different information sources: precursor intensities and spectral counts. Intensities are accurate for calculating protein relative abundanc...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr400438q

    authors: Chen YY,Chambers MC,Li M,Ham AJ,Turner JL,Zhang B,Tabb DL

    更新日期:2013-09-06 00:00:00

  • Metabolic flux analysis and visualization.

    abstract::One of the ultimate goals of systems biology research is to obtain a comprehensive understanding of the control mechanisms of complex cellular metabolisms. Metabolic Flux Analysis (MFA) is a important method for the quantitative estimation of intracellular metabolic flows through metabolic pathways and the elucidation...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr2002885

    authors: Toya Y,Kono N,Arakawa K,Tomita M

    更新日期:2011-08-05 00:00:00

  • Systems Biology Reveals NS4B-Cyclophilin A Interaction: A New Target to Inhibit YFV Replication.

    abstract::Yellow fever virus (YFV) replication is highly dependent on host cell factors. YFV NS4B is reported to be involved in viral replication and immune evasion. Here interactions between NS4B and human proteins were determined using a GST pull-down assay and analyzed using 1-DE and LC-MS/MS. We present a total of 207 prote...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/acs.jproteome.6b00933

    authors: Vidotto A,Morais AT,Ribeiro MR,Pacca CC,Terzian AC,Gil LH,Mohana-Borges R,Gallay P,Nogueira ML

    更新日期:2017-04-07 00:00:00

  • Pilot phase I/II personalized therapy trial for metastatic colorectal cancer: evaluating the feasibility of protein pathway activation mapping for stratifying patients to therapy with imatinib and panitumumab.

    abstract::This nonrandomized phase I/II trial assessed the efficacy/tolerability of imatinib plus panitumumab in patients affected by metastatic colorectal cancer (mCRC) after stratification to treatment by selection of activated imatinib drug targets using reverse-phase protein array (RPPA). mCRC patients presenting with a bio...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr401267m

    authors: Pierobon M,Silvestri A,Spira A,Reeder A,Pin E,Banks S,Parasido E,Edmiston K,Liotta L,Petricoin E

    更新日期:2014-06-06 00:00:00

  • A new workflow for proteomic analysis of urinary exosomes and assessment in cystinuria patients.

    abstract::Cystinuria is a purely renal, rare genetic disease caused by mutations in cystine transporter genes and characterized by defective cystine reabsorption leading to kidney stones. In 14% of cases, patients undergo nephrectomy, but given the difficulty to predict the evolution of the disease, the identification of marker...

    journal_title:Journal of proteome research

    pub_type: 杂志文章

    doi:10.1021/pr501003q

    authors: Bourderioux M,Nguyen-Khoa T,Chhuon C,Jeanson L,Tondelier D,Walczak M,Ollero M,Bekri S,Knebelmann B,Escudier E,Escudier B,Edelman A,Guerrera IC

    更新日期:2015-01-02 00:00:00