A dimer is the minimal proton-conducting unit of the influenza a virus M2 channel.

Abstract:

:When influenza A virus infects host cells, its integral matrix protein M2 forms a proton-selective channel in the viral envelope. Although X-ray crystallography and NMR studies using fragment peptides have suggested that M2 stably forms a tetrameric channel irrespective of pH, the oligomeric states of the full-length protein in the living cells have not yet been assessed directly. In the present study, we utilized recently developed stoichiometric analytical methods based on fluorescence resonance energy transfer using coiled-coil labeling technique and spectral imaging, and we examined the relationship between the oligomeric states of full-length M2 and its channel activities in living cells. In contrast to previous models, M2 formed proton-conducting dimers at neutral pH and these dimers were converted to tetramers at acidic pH. The antiviral drug amantadine hydrochloride inhibited both tetramerization and channel activity. The removal of cholesterol resulted in a significant decrease in the activity of the dimer. These results indicate that the minimum functional unit of the M2 protein is a dimer, which forms a complex with cholesterol for its function.

journal_name

J Mol Biol

authors

Kawano K,Yano Y,Matsuzaki K

doi

10.1016/j.jmb.2014.05.002

subject

Has Abstract

pub_date

2014-07-15 00:00:00

pages

2679-91

issue

14

eissn

0022-2836

issn

1089-8638

pii

S0022-2836(14)00229-0

journal_volume

426

pub_type

杂志文章
  • Multiple roles of prolyl residues in structure and folding.

    abstract::To explore the ways that proline residues may influence the conformational options of a polypeptide backbone, we have characterized Pro-->Ala mutants of cellular retinoic acid-binding protein I (CRABP I). While all three Xaa-Pro bonds are in the trans conformation in the native protein and the equilibrium stability of...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.2000.4002

    authors: Eyles SJ,Gierasch LM

    更新日期:2000-08-18 00:00:00

  • Folding of the yeast prion protein Ure2: kinetic evidence for folding and unfolding intermediates.

    abstract::The Saccharomyces cerevisiae non-Mendelian factor [URE3] propagates by a prion-like mechanism, involving aggregation of the chromosomally encoded protein Ure2. The N-terminal prion domain (PrD) of Ure2 is required for prion activity in vivo and amyloid formation in vitro. However, the molecular mechanism of the prion-...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.2001.5234

    authors: Galani D,Fersht AR,Perrett S

    更新日期:2002-01-11 00:00:00

  • The folding energy landscape of the dimerization domain of Escherichia coli Trp repressor: a joint experimental and theoretical investigation.

    abstract::Enhanced structural insights into the folding energy landscape of the N-terminal dimerization domain of Escherichia coli tryptophan repressor, [2-66]2 TR, were obtained from a combined experimental and theoretical analysis of its equilibrium folding reaction. Previous studies have shown that the three intertwined heli...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2006.07.080

    authors: Simler BR,Levy Y,Onuchic JN,Matthews CR

    更新日期:2006-10-13 00:00:00

  • Calculation of the relative binding free energy of 2'GMP and 2'AMP to ribonuclease T1 using molecular dynamics/free energy perturbation approaches.

    abstract::We present a calculation of the relative changes in binding free energy between the complex of ribonuclease T1 (RNase Tr) with its inhibitor 2'-guanosine monophosphate (2'GMP) and that of RNase T1-2'-adenosine monophosphate (2'AMP) by means of a thermodynamic perturbation method implemented with molecular dynamics. Us...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/0022-2836(90)90315-D

    authors: Hirono S,Kollman PA

    更新日期:1990-03-05 00:00:00

  • Modular structure in developmentally eliminated DNA in Tetrahymena may be a consequence of frequent insertions and deletions.

    abstract::The work reported here describes insertion-deletion (Indel) polymorphisms in two internally eliminated sequences (IESs, that are deleted during development in Tetrahymena): a 1.8 kb Indel at one end of the 1.1 kb H1 IES and a 0.5 kb Indel inside the 1.4 kb calmodulin (C) IES. These two IESs are located in the proximit...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2003.12.065

    authors: Huvos P

    更新日期:2004-03-05 00:00:00

  • Electrostatic interactions in the denatured state and in the transition state for protein folding: effects of denatured state interactions on the analysis of transition state structure.

    abstract::The development of electrostatic interactions during the folding of the N-terminal domain of the ribosomal protein L9 (NTL9) is investigated by pH-dependent rate equilibrium free energy relationships. We show that Asp8, among six acidic residues, is involved in non-native, electrostatic interactions with K12 in the tr...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2006.04.038

    authors: Cho JH,Raleigh DP

    更新日期:2006-06-23 00:00:00

  • Mechanism of action and in vivo efficacy of a human-derived antibody against Staphylococcus aureus α-hemolysin.

    abstract::The emergence and spread of multi-drug-resistant strains of Staphylococcus aureus in hospitals and in the community emphasize the urgency for the development of novel therapeutic interventions. Our approach was to evaluate the potential of harnessing the human immune system to guide the development of novel therapeuti...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2013.02.008

    authors: Foletti D,Strop P,Shaughnessy L,Hasa-Moreno A,Casas MG,Russell M,Bee C,Wu S,Pham A,Zeng Z,Pons J,Rajpal A,Shelton D

    更新日期:2013-05-27 00:00:00

  • Solvent effects on protein motion and protein effects on solvent motion. Dynamics of the active site region of lysozyme.

    abstract::The stochastic boundary molecular dynamics methodology is applied to the active site of the enzyme lysozyme. A comparison is made of in vacuo dynamics results from the stochastic boundary method and a full conventional molecular dynamics simulation of lysozyme. Excellent agreement between the two approaches is obtaine...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/0022-2836(89)90093-4

    authors: Brooks CL 3rd,Karplus M

    更新日期:1989-07-05 00:00:00

  • Nature of recombination involved in excision and rearrangement of human repetitive DNA.

    abstract::An alphoid-like human repetitive DNA of the Sau3A family is present extrachromosomally and in the chromosomes. In the chromosomes, the DNA is located on chromosome 11 but related sequences are present in chromosome 17. We characterized the nature of the recombination involved in the excision of the extrachromosomal DN...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/0022-2836(87)90202-6

    authors: Kiyama R,Okumura K,Matsui H,Bruns GA,Kanda N,Oishi M

    更新日期:1987-12-20 00:00:00

  • Ising Model Reprogramming of a Repeat Protein's Equilibrium Unfolding Pathway.

    abstract::Repeat proteins are formed from units of 20-40 aa that stack together into quasi one-dimensional non-globular structures. This modular repetitive construction means that, unlike globular proteins, a repeat protein's equilibrium folding and thus thermodynamic stability can be analysed using linear Ising models. Typical...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2016.02.022

    authors: Millership C,Phillips JJ,Main ER

    更新日期:2016-05-08 00:00:00

  • Structure of RecA-DNA complexes studied by combination of linear dichroism and small-angle neutron scattering measurements on flow-oriented samples.

    abstract::By combining anisotropy of small-angle neutron scattering (SANS) and optical anisotropy (linear dichroism, l.d.) on flow-oriented RecA-DNA complexes, the average DNA-base orientation has been determined in RecA complexes with double-stranded (ds) as well as single-stranded (ss) DNA. From the anisotropy of the two-dime...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/0022-2836(92)91060-3

    authors: Nordén B,Elvingson C,Kubista M,Sjöberg B,Ryberg H,Ryberg M,Mortensen K,Takahashi M

    更新日期:1992-08-20 00:00:00

  • A distal, high-affinity binding site on the cyclin-CDK substrate Pho4 is important for its phosphorylation and regulation.

    abstract::Cyclins and cyclin-dependent kinases (CDKs) are key components of signaling pathways essential for cell growth and survival. The cyclin-CDK Pho80-Pho85 inactivates the transcription factor Pho4 in budding yeast by phosphorylating it on five sites. We isolated seven single amino acid substitutions outside of the phosph...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2003.10.035

    authors: Byrne M,Miller N,Springer M,O'Shea EK

    更新日期:2004-01-02 00:00:00

  • Initiation of DNA replication at cloned origins of bacteriophage T7.

    abstract::Bacteriophage T7 DNA replication is initiated at a site 15% of the distance from the genetic left end of the chromosome. This primary origin contains two tandem T7 RNA polymerase promoters (phi 1.1A and phi 1.1B) followed by an A + T-rich region. When the primary origin region is deleted replication initiates at secon...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/0022-2836(88)90050-2

    authors: Rabkin SD,Richardson CC

    更新日期:1988-12-20 00:00:00

  • Specification of DNA replication origins and genomic base composition in fission yeasts.

    abstract::In the "Replicon Theory", Jacob, Brenner and Cuzin proposed the existence of replicators and initiators as the two major actors in DNA replication. Over the years, many protein components of initiators have been shown to be conserved in different organisms during evolution. By contrast, replicator DNA sequences (often...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.jmb.2013.09.023

    authors: Mojardín L,Vázquez E,Antequera F

    更新日期:2013-11-29 00:00:00

  • Order of steps in the cytochrome C folding pathway: evidence for a sequential stabilization mechanism.

    abstract::Previous work used hydrogen exchange (HX) experiments in kinetic and equilibrium modes to study the reversible unfolding and refolding of cytochrome c (Cyt c) under native conditions. Accumulated results now show that Cyt c is composed of five individually cooperative folding units, called foldons, which unfold and re...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2006.04.035

    authors: Krishna MM,Maity H,Rumbley JN,Lin Y,Englander SW

    更新日期:2006-06-23 00:00:00

  • Probing myosin head structure with monoclonal antibodies.

    abstract::Monoclonal antibodies that react with defined regions of the heavy and light chains of chicken skeletal muscle myosin have been used to provide a correlation between the primary and the tertiary structures of the head. Electron microscopy of rotary shadowed antibody-myosin complexes shows that the sites for three epit...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/s0022-2836(86)80009-2

    authors: Winkelmann DA,Lowey S

    更新日期:1986-04-20 00:00:00

  • PKA-dependent binding of mRNA to the mitochondrial AKAP121 protein.

    abstract::Protein kinase A (PKA) anchoring proteins (AKAPs) tether PKA to various subcellular locations. AKAP121, which tethers PKAII to the outer mitochondrial membrane, includes a K homology (KH) RNA-binding motif. Purified AKAP121 KH domain binds the 3' untranslated regions (3'UTRs) of transcripts encoding the Fo-f subunit o...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/s0022-2836(03)00173-6

    authors: Ginsberg MD,Feliciello A,Jones JK,Avvedimento EV,Gottesman ME

    更新日期:2003-04-04 00:00:00

  • Probing the structural domains and function in vivo of Escherichia coli DNA topoisomerase I by mutagenesis.

    abstract::Insertion and deletion mutagenesis within the gene topA of Escherichia coli encoding DNA topoisomerase I was carried out to test the existence of subdomains in the enzyme and the relationship between the slow-growth topA- phenotype and the known DNA relaxation activity of the enzyme. All mutants that show no detectabl...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/0022-2836(86)90130-0

    authors: Zumstein L,Wang JC

    更新日期:1986-10-05 00:00:00

  • tRNA 3' end maturation in archaea has eukaryotic features: the RNase Z from Haloferax volcanii.

    abstract::Here, we report the first characterization and partial purification of an archaeal tRNA 3' processing activity, the RNase Z from Haloferax volcanii. The activity identified here is an endonuclease, which cleaves tRNA precursors 3' to the discriminator. Thus tRNA 3' processing in archaea resembles the eukaryotic 3' pro...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.2001.5395

    authors: Schierling K,Rösch S,Rupprecht R,Schiffer S,Marchfelder A

    更新日期:2002-03-01 00:00:00

  • Genetic dissection of the consensus sequence for the class 2 and class 3 flagellar promoters.

    abstract::Computational searches for DNA binding sites often utilize consensus sequences. These search models make assumptions that the frequency of a base pair in an alignment relates to the base pair's importance in binding and presume that base pairs contribute independently to the overall interaction with the DNA-binding pr...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2008.04.043

    authors: Wozniak CE,Hughes KT

    更新日期:2008-06-20 00:00:00

  • Chimeric HIV-1 and feline immunodeficiency virus reverse transcriptases: critical role of the p51 subunit in the structural integrity of heterodimeric lentiviral DNA polymerases.

    abstract::The reverse transcriptase (RT) of HIV-1 and feline immunodeficiency virus (FIV) consist of two subunits of 51 kDa (p51) and 66 kDa (p66). In order to elucidate the role of p51 in the heterodimer, chimeric HIV-1/FIV RT heterodimers were constructed and characterized. The FIV RT p51/HIV-1 RT p66 chimera showed a 2.5-fol...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1998.1739

    authors: Amacker M,Hübscher U

    更新日期:1998-05-15 00:00:00

  • Kinetic isotope effects reveal the presence of significant secondary structure in the transition state for the folding of the N-terminal domain of L9.

    abstract::Our present understanding of the nature of the transition state for protein folding depends predominantly on studies where individual side-chain contributions are mapped out by mutational analysis (phi value analysis). This approach, although extremely powerful, does not in general provide direct information about the...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2007.02.084

    authors: Sato S,Raleigh DP

    更新日期:2007-07-06 00:00:00

  • A conformational switch involved in maturation of Staphylococcus aureus bacteriophage 80α capsids.

    abstract::Bacteriophages are involved in many aspects of the spread and establishment of virulence factors in Staphylococcus aureus, including the mobilization of genetic elements known as S. aureus pathogenicity islands (SaPIs), which carry genes for superantigen toxins and other virulence factors. SaPIs are packaged into phag...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2010.11.047

    authors: Spilman MS,Dearborn AD,Chang JR,Damle PK,Christie GE,Dokland T

    更新日期:2011-01-21 00:00:00

  • Conformational isomers of a class II MHC-peptide complex in solution.

    abstract::A number of kinetic measurements of peptide dissociation from class II MHC-peptide complexes provide compelling evidence for the existence of conformational isomers in solution. There is evidence that T-lymphocytes can distinguish such isomers. However, virtually nothing is known about the structure of these isomers. ...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1998.2463

    authors: Schmitt L,Boniface JJ,Davis MM,McConnell HM

    更新日期:1999-02-12 00:00:00

  • Effects of mutations in the polymerase domain on the polymerase, RNase H and strand transfer activities of human immunodeficiency virus type 1 reverse transcriptase.

    abstract::Based on structural analyses and on the behavior of mutants, we suggest that the polymerase domain of HIV-1 reverse transcriptase (RT) plays a critical role in holding and appropriately positioning the template-primer both at the polymerase active site and at the RNase H active site. For RT to successfully copy the vi...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1998.1624

    authors: Gao HQ,Boyer PL,Arnold E,Hughes SH

    更新日期:1998-04-03 00:00:00

  • Structure of complexes between a major protein of heterogeneous nuclear ribonucleoprotein particles and polyribonucleotides.

    abstract::We have investigated the structure of complexes formed between a series of poly(A)n (n = 30 to 480) and HD40 (helix-destabilizing protein, molecular weight of 40,000), the major protein component of 30 S heterogeneous nuclear ribonucleoprotein particles (hnRNP) from the brine shrimp Artemia salina. Protein HD40 is sim...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/0022-2836(83)90039-6

    authors: Thomas JO,Glowacka SK,Szer W

    更新日期:1983-12-25 00:00:00

  • Structure-function relationships within the peptide deformylase family. Evidence for a conserved architecture of the active site involving three conserved motifs and a metal ion.

    abstract::Thermus thermophilus peptide deformylase was characterized. Its enzymatic properties as well as its organization in domains proved to share close resemblances with those of the Escherichia coli enzyme despite few sequence identities. In addition to the HEXXH signature sequence of the zinc metalloprotease family, a sec...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1997.0904

    authors: Meinnel T,Lazennec C,Villoing S,Blanquet S

    更新日期:1997-04-04 00:00:00

  • Investigating the high affinity and low sequence specificity of calmodulin binding to its targets.

    abstract::Calmodulin (CaM) is a calcium binding protein that regulates a wide range of enzymes. Recently the structures of a number of complexes between CaM and synthetic target peptides have been determined. The peptides correspond to the CaM-binding domain of skeletal and smooth muscle myosin light-chain kinase (MLCK) and cal...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1006/jmbi.1994.1752

    authors: Afshar M,Caves LS,Guimard L,Hubbard RE,Calas B,Grassy G,Haiech J

    更新日期:1994-12-16 00:00:00

  • Diverse role of three tyrosines in binding of the RNA 5' cap to the human nuclear cap binding complex.

    abstract::The heterodimeric nuclear cap-binding complex (CBC) specifically recognizes the monomethylguanosine 5' cap structure of the eukaryotic RNA polymerase II transcripts such as mRNA and U snRNA. The binding is essential for nuclear maturation of mRNA, for nuclear export of U snRNA in metazoans, and for nonsense-mediated d...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2008.10.092

    authors: Worch R,Jankowska-Anyszka M,Niedzwiecka A,Stepinski J,Mazza C,Darzynkiewicz E,Cusack S,Stolarski R

    更新日期:2009-01-16 00:00:00

  • Binding and Action of Amino Acid Analogs of Chloramphenicol upon the Bacterial Ribosome.

    abstract::Antibiotic chloramphenicol (CHL) binds with a moderate affinity at the peptidyl transferase center of the bacterial ribosome and inhibits peptide bond formation. As an approach for modifying and potentially improving properties of this inhibitor, we explored ribosome binding and inhibitory activity of a number of amin...

    journal_title:Journal of molecular biology

    pub_type: 杂志文章

    doi:10.1016/j.jmb.2018.01.016

    authors: Tereshchenkov AG,Dobosz-Bartoszek M,Osterman IA,Marks J,Sergeeva VA,Kasatsky P,Komarova ES,Stavrianidi AN,Rodin IA,Konevega AL,Sergiev PV,Sumbatyan NV,Mankin AS,Bogdanov AA,Polikanov YS

    更新日期:2018-03-16 00:00:00