SpyLigase peptide-peptide ligation polymerizes affibodies to enhance magnetic cancer cell capture.

Abstract:

:Individual proteins can now often be modified with atomic precision, but there are still major obstacles to connecting proteins into larger assemblies. To direct protein assembly, ideally, peptide tags would be used, providing the minimal perturbation to protein function. However, binding to peptides is generally weak, so assemblies are unstable over time and disassemble with force or harsh conditions. We have recently developed an irreversible protein-peptide interaction (SpyTag/SpyCatcher), based on a protein domain from Streptococcus pyogenes, that locks itself together via spontaneous isopeptide bond formation. Here we develop irreversible peptide-peptide interaction, through redesign of this domain and genetic dissection into three parts: a protein domain termed SpyLigase, which now ligates two peptide tags to each other. All components expressed efficiently in Escherichia coli and peptide tags were reactive at the N terminus, at the C terminus, or at internal sites. Peptide-peptide ligation enabled covalent and site-specific polymerization of affibodies or antibodies against the tumor markers epidermal growth factor receptor (EGFR) and HER2. Magnetic capture of circulating tumor cells (CTCs) is one of the most promising approaches to improve cancer prognosis and management, but CTC capture is limited by inefficient recovery of cells expressing low levels of tumor antigen. SpyLigase-assembled protein polymers made possible the isolation of cancerous cells expressing lower levels of tumor antigen and should have general application in enhancing molecular capture.

authors

Fierer JO,Veggiani G,Howarth M

doi

10.1073/pnas.1315776111

subject

Has Abstract

pub_date

2014-04-01 00:00:00

pages

E1176-81

issue

13

eissn

0027-8424

issn

1091-6490

pii

1315776111

journal_volume

111

pub_type

杂志文章
  • X and y operators for general linear transport processes.

    abstract::This note presents the derivation of generalized Ambartsumian-Chandrasekhar X and Y functions for stationary transfer in a plane-parallel slab. An algebraic formula relating these functions to the usual reflection function is also presented, together with the appropriate generalization of the Chandrasekhar H-equations...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.72.3.1210

    authors: Casti J

    更新日期:1975-03-01 00:00:00

  • Septin assemblies form by diffusion-driven annealing on membranes.

    abstract::Septins assemble into filaments and higher-order structures that act as scaffolds for diverse cell functions including cytokinesis, cell polarity, and membrane remodeling. Despite their conserved role in cell organization, little is known about how septin filaments elongate and are knitted together into higher-order a...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1314138111

    authors: Bridges AA,Zhang H,Mehta SB,Occhipinti P,Tani T,Gladfelter AS

    更新日期:2014-02-11 00:00:00

  • Transcriptome and metabolome profiling of field-grown transgenic barley lack induced differences but show cultivar-specific variances.

    abstract::The aim of the present study was to assess possible adverse effects of transgene expression in leaves of field-grown barley relative to the influence of genetic background and the effect of plant interaction with arbuscular mycorrhizal fungi. We conducted transcript profiling, metabolome profiling, and metabolic finge...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1001945107

    authors: Kogel KH,Voll LM,Schäfer P,Jansen C,Wu Y,Langen G,Imani J,Hofmann J,Schmiedl A,Sonnewald S,von Wettstein D,Cook RJ,Sonnewald U

    更新日期:2010-04-06 00:00:00

  • Stratification of reactivity determines nitrate removal in groundwater.

    abstract::Biogeochemical reactions occur unevenly in space and time, but this heterogeneity is often simplified as a linear average due to sparse data, especially in subsurface environments where access is limited. For example, little is known about the spatial variability of groundwater denitrification, an important process in...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1816892116

    authors: Kolbe T,de Dreuzy JR,Abbott BW,Aquilina L,Babey T,Green CT,Fleckenstein JH,Labasque T,Laverman AM,Marçais J,Peiffer S,Thomas Z,Pinay G

    更新日期:2019-02-12 00:00:00

  • Actin stress in cell reprogramming.

    abstract::Cell mechanics plays a role in stem cell reprogramming and differentiation. To understand this process better, we created a genetically encoded optical probe, named actin-cpstFRET-actin (AcpA), to report forces in actin in living cells in real time. We showed that stemness was associated with increased force in actin....

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1411683111

    authors: Guo J,Wang Y,Sachs F,Meng F

    更新日期:2014-12-09 00:00:00

  • Worldwide differences in the incidence of type I diabetes are associated with amino acid variation at position 57 of the HLA-DQ beta chain.

    abstract::The presence of an amino acid other than aspartic acid at position 57 of the HLA-DQ beta chain (non-Asp-57) is highly associated with susceptibility to insulin-dependent diabetes mellitus (IDDM), whereas an aspartic acid at this position (Asp-57) appears to confer resistance to the disease. We hypothesize that the 30-...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.87.19.7370

    authors: Dorman JS,LaPorte RE,Stone RA,Trucco M

    更新日期:1990-10-01 00:00:00

  • Expression of purine overproduction in a series of 8-azaguanine-resistant diploid human lymphoblast lines.

    abstract::For study of the basis of an X-linked form of gout in man, several clonal lines deficient in hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) were selected from the human lymphoblast line WI-L2 by spontaneous and mutagen-induced resistance to 10 muM 8-azaguanine. Three groups could be defined: (1) clones wi...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.71.7.2679

    authors: Lever JE,Nuki G,Seegmiller JE

    更新日期:1974-07-01 00:00:00

  • Tree-structured supervised learning and the genetics of hypertension.

    abstract::This paper is about an algorithm, FlexTree, for general supervised learning. It extends the binary tree-structured approach (Classification and Regression Trees, CART) although it differs greatly in its selection and combination of predictors. It is particularly applicable to assessing interactions: gene by gene and g...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0403794101

    authors: Huang J,Lin A,Narasimhan B,Quertermous T,Hsiung CA,Ho LT,Grove JS,Olivier M,Ranade K,Risch NJ,Olshen RA

    更新日期:2004-07-20 00:00:00

  • Granulocytes, macrophages, and dendritic cells arise from a common major histocompatibility complex class II-negative progenitor in mouse bone marrow.

    abstract::The developmental origin of dendritic cells, a specialized system of major histocompatibility complex (MHC) class II-rich antigen-presenting cells for T-cell immunity and tolerance, is not well characterized. Granulocyte-macrophage colony-stimulating factor (GM-CSF) is known to stimulate dendritic cells, including gro...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.90.7.3038

    authors: Inaba K,Inaba M,Deguchi M,Hagi K,Yasumizu R,Ikehara S,Muramatsu S,Steinman RM

    更新日期:1993-04-01 00:00:00

  • Myosin V processivity: multiple kinetic pathways for head-to-head coordination.

    abstract::Myosin V, a double-headed molecular motor, transports organelles within cells by walking processively along actin, a process that requires coordination between the heads. To understand the mechanism underlying this coordination, processive runs of single myosin V molecules were perturbed by varying nucleotide content....

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0307247101

    authors: Baker JE,Krementsova EB,Kennedy GG,Armstrong A,Trybus KM,Warshaw DM

    更新日期:2004-04-13 00:00:00

  • Gaucher's disease: deficiency of 'acid' -glucosidase and reconstitution of enzyme activity in vitro.

    abstract::The spleen from a patient with adult Gaucher's disease was shown to be deficient in a beta-glucosidase (EC 3.2.1.21) isoenzyme that has optimal activity at pH 4.0-4.3, and is stimulated by 0.02% Triton X-100. A mixture of spleen homogenates from a control and from the patient contained beta-glucosidase activity equiva...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.68.11.2810

    authors: Ho MW,O'Brien JS

    更新日期:1971-11-01 00:00:00

  • Draft genome of the peanut A-genome progenitor (Arachis duranensis) provides insights into geocarpy, oil biosynthesis, and allergens.

    abstract::Peanut or groundnut (Arachis hypogaea L.), a legume of South American origin, has high seed oil content (45-56%) and is a staple crop in semiarid tropical and subtropical regions, partially because of drought tolerance conferred by its geocarpic reproductive strategy. We present a draft genome of the peanut A-genome p...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1600899113

    authors: Chen X,Li H,Pandey MK,Yang Q,Wang X,Garg V,Li H,Chi X,Doddamani D,Hong Y,Upadhyaya H,Guo H,Khan AW,Zhu F,Zhang X,Pan L,Pierce GJ,Zhou G,Krishnamohan KA,Chen M,Zhong N,Agarwal G,Li S,Chitikineni A,Zhang GQ

    更新日期:2016-06-14 00:00:00

  • A specific role of MutT protein: to prevent dG.dA mispairing in DNA replication.

    abstract::Occurrence of the transversion mutation A.T to C.G is specifically enhanced in Escherichia coli mutT mutants. With the aid of the cloned mutT gene, the MutT protein, which has a molecular mass of 15 kilodaltons, was overproduced and purified to near homogeneity. The protein catalyzes hydrolysis of dGTP to dGMP. dGDP a...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.86.11.3949

    authors: Akiyama M,Maki H,Sekiguchi M,Horiuchi T

    更新日期:1989-06-01 00:00:00

  • Revealing the structure of a catalytic combustion active-site ensemble combining uniform nanocrystal catalysts and theory insights.

    abstract::Supported metal catalysts are extensively used in industrial and environmental applications. To improve their performance, it is crucial to identify the most active sites. This identification is, however, made challenging by the presence of a large number of potential surface structures that complicate such an assignm...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.2002342117

    authors: Yang AC,Choksi T,Streibel V,Aljama H,Wrasman CJ,Roling LT,Goodman ED,Thomas D,Bare SR,Sánchez-Carrera RS,Schäfer A,Li Y,Abild-Pedersen F,Cargnello M

    更新日期:2020-06-30 00:00:00

  • Identification of the von Hippel-lindau tumor-suppressor protein as part of an active E3 ubiquitin ligase complex.

    abstract::Mutations of von Hippel-Lindau disease (VHL) tumor-suppressor gene product (pVHL) are found in patients with dominant inherited VHL syndrome and in the vast majority of sporadic clear cell renal carcinomas. The function of the pVHL protein has not been clarified. pVHL has been shown to form a complex with elongin B an...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 评论,杂志文章

    doi:10.1073/pnas.96.22.12436

    authors: Iwai K,Yamanaka K,Kamura T,Minato N,Conaway RC,Conaway JW,Klausner RD,Pause A

    更新日期:1999-10-26 00:00:00

  • The MCK mouse heart model of Friedreich's ataxia: Alterations in iron-regulated proteins and cardiac hypertrophy are limited by iron chelation.

    abstract::There is no effective treatment for the cardiomyopathy of the most common autosomal recessive ataxia, Friedreich's ataxia (FA). The identification of potentially toxic mitochondrial (MIT) iron (Fe) deposits in FA suggests that Fe plays a role in its pathogenesis. This study used the muscle creatine kinase conditional ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0804261105

    authors: Whitnall M,Suryo Rahmanto Y,Sutak R,Xu X,Becker EM,Mikhael MR,Ponka P,Richardson DR

    更新日期:2008-07-15 00:00:00

  • Id1 restrains myeloid commitment, maintaining the self-renewal capacity of hematopoietic stem cells.

    abstract::Appropriate hematopoietic stem cell (HSC) self-renewal reflects the tight regulation of cell cycle entry and lineage commitment. Here, we show that Id1, a dominant-negative regulator of E protein transcription factors, maintains HSC self-renewal by preserving the undifferentiated state. Id1-deficient HSCs show increas...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0607894104

    authors: Jankovic V,Ciarrocchi A,Boccuni P,DeBlasio T,Benezra R,Nimer SD

    更新日期:2007-01-23 00:00:00

  • Hv1 proton channels are required for high-level NADPH oxidase-dependent superoxide production during the phagocyte respiratory burst.

    abstract::Granulocytes generate a "respiratory burst" of NADPH oxidase-dependent superoxide anion (O(2)(-*)) production that is required for efficient clearance of bacterial pathogens. Hv1 mediates a voltage-gated H(+) channel activity that is proposed to serve a charge-balancing role in granulocytic phagocytes such as neutroph...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0902761106

    authors: Ramsey IS,Ruchti E,Kaczmarek JS,Clapham DE

    更新日期:2009-05-05 00:00:00

  • Beyond the Rayleigh instability limit for multicharged finite systems: from fission to Coulomb explosion.

    abstract::We address the stability of multicharged finite systems driven by Coulomb forces beyond the Rayleigh instability limit. Our exploration of the nuclear dynamics of heavily charged Morse clusters enabled us to vary the range of the pair potential and of the fissibility parameter, which results in distinct fragmentation ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.142253999

    authors: Last I,Levy Y,Jortner J

    更新日期:2002-07-09 00:00:00

  • Retinoid X receptors are essential for early mouse development and placentogenesis.

    abstract::Embryos carrying null mutations of both retinoid X receptors alpha and beta (RXRalpha-/-/RXRbeta-/- mutants) were generated. These mutant embryos die between 9.5 and 10.5 days of gestation and display a wide range of abnormalities. The cause of the lethality appears to be the lack of formation of the labyrinthine zone...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.96.2.547

    authors: Wendling O,Chambon P,Mark M

    更新日期:1999-01-19 00:00:00

  • The c-myc oncogene is translocated to the involved chromosome 12 in mouse plasmacytoma.

    abstract::Although it is known that the c-myc oncogene is rearranged in a head-to-head fashion with the immunoglobulin heavy chain locus in mouse plasmacytomas, it has not been clear whether the c-myc oncogene is translocated to the heavy chain locus on mouse chromosome 12 or whether the heavy chain locus is translocated to the...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.82.12.4212

    authors: Erikson J,Miller DA,Miller OJ,Abcarian PW,Skurla RM,Mushinski JF,Croce CM

    更新日期:1985-06-01 00:00:00

  • Carbon dioxide fixation as a central redox cofactor recycling mechanism in bacteria.

    abstract::The Calvin-Benson-Bassham cycle (Calvin cycle) catalyzes virtually all primary productivity on Earth and is the major sink for atmospheric CO(2). A less appreciated function of CO(2) fixation is as an electron-accepting process. It is known that anoxygenic phototrophic bacteria require the Calvin cycle to accept elect...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1006175107

    authors: McKinlay JB,Harwood CS

    更新日期:2010-06-29 00:00:00

  • Companies' contribution to sustainability through global supply chains.

    abstract::Global supply chains play a critical role in many of the most pressing environmental stresses and social struggles identified by the United Nations' Sustainable Development Goals (SDGs). Responding to calls from the global community, companies are adopting a variety of voluntary practices to improve the environmental ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1716695115

    authors: Thorlakson T,de Zegher JF,Lambin EF

    更新日期:2018-02-27 00:00:00

  • Evidence for adaptive radiation from a phylogenetic study of plant defenses.

    abstract::One signature of adaptive radiation is a high level of trait change early during the diversification process and a plateau toward the end of the radiation. Although the study of the tempo of evolution has historically been the domain of paleontologists, recently developed phylogenetic tools allow for the rigorous exam...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0904862106

    authors: Agrawal AA,Fishbein M,Halitschke R,Hastings AP,Rabosky DL,Rasmann S

    更新日期:2009-10-27 00:00:00

  • Increasing crop heterogeneity enhances multitrophic diversity across agricultural regions.

    abstract::Agricultural landscape homogenization has detrimental effects on biodiversity and key ecosystem services. Increasing agricultural landscape heterogeneity by increasing seminatural cover can help to mitigate biodiversity loss. However, the amount of seminatural cover is generally low and difficult to increase in many i...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1906419116

    authors: Sirami C,Gross N,Baillod AB,Bertrand C,Carrié R,Hass A,Henckel L,Miguet P,Vuillot C,Alignier A,Girard J,Batáry P,Clough Y,Violle C,Giralt D,Bota G,Badenhausser I,Lefebvre G,Gauffre B,Vialatte A,Calatayud F,Gil-T

    更新日期:2019-08-13 00:00:00

  • Differences in quantal amplitude reflect GluR4- subunit number at corticothalamic synapses on two populations of thalamic neurons.

    abstract::Low-frequency thalamocortical oscillations that underlie drowsiness and slow-wave sleep depend on rhythmic inhibition of relay cells by neurons in the reticular nucleus (RTN) under the influence of corticothalamic fibers that branch to innervate RTN neurons and relay neurons. To generate oscillations, input to RTN pre...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.061013698

    authors: Golshani P,Liu XB,Jones EG

    更新日期:2001-03-27 00:00:00

  • Stress-induced phosphorylation of STAT1 at Ser727 requires p38 mitogen-activated protein kinase whereas IFN-gamma uses a different signaling pathway.

    abstract::STAT1 is an essential transcription factor for macrophage activation by IFN-gamma and requires phosphorylation of the C-terminal Ser727 for transcriptional activity. In macrophages, Ser727 phosphorylation in response to bacterial lipopolysaccharide (LPS), UV irradiation, or TNF-alpha occurred through a signaling path ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.96.24.13956

    authors: Kovarik P,Stoiber D,Eyers PA,Menghini R,Neininger A,Gaestel M,Cohen P,Decker T

    更新日期:1999-11-23 00:00:00

  • Long-range structural defects by pathogenic mutations in most severe glucose-6-phosphate dehydrogenase deficiency.

    abstract::Glucose-6-phosphate dehydrogenase (G6PD) deficiency is the most common blood disorder, presenting multiple symptoms, including hemolytic anemia. It affects 400 million people worldwide, with more than 160 single mutations reported in G6PD. The most severe mutations (about 70) are classified as class I, leading to more...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.2022790118

    authors: Horikoshi N,Hwang S,Gati C,Matsui T,Castillo-Orellana C,Raub AG,Garcia AA,Jabbarpour F,Batyuk A,Broweleit J,Xiang X,Chiang A,Broweleit R,Vöhringer-Martinez E,Mochly-Rosen D,Wakatsuki S

    更新日期:2021-01-26 00:00:00

  • Dysregulated gene expression networks in human acute myelogenous leukemia stem cells.

    abstract::We performed the first genome-wide expression analysis directly comparing the expression profile of highly enriched normal human hematopoietic stem cells (HSC) and leukemic stem cells (LSC) from patients with acute myeloid leukemia (AML). Comparing the expression signature of normal HSC to that of LSC, we identified 3...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0900089106

    authors: Majeti R,Becker MW,Tian Q,Lee TL,Yan X,Liu R,Chiang JH,Hood L,Clarke MF,Weissman IL

    更新日期:2009-03-03 00:00:00

  • Amino acid sequence of the first constant region domain and the hinge region of the delta heavy chain of human IgD.

    abstract::We have determined the amino acid sequence of the first constant (C) region domain (C delta 1) and the hinge region of the delta heavy chain of human IgD WAH and also the sequence of the adjacent COOH-terminal portion of the variable (V) region, including the JH region. Together with the sequence of the Fc fragment al...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.78.10.6168

    authors: Putnam FW,Takahashi N,Tetaert D,Debuire B,Lin LC

    更新日期:1981-10-01 00:00:00