Sex- and age-dependent DNA methylation at the 17q12-q21 locus associated with childhood asthma.

Abstract:

:Chromosomal region 17q12-q21 is one of the best-replicated genome-wide association study (GWAS) hits and associated with childhood-onset asthma. However, the mechanism by which the genetic association is restricted to childhood-onset disease is unclear. During childhood, more boys than girls develop asthma. Therefore, we tested the hypothesis that the 17q12-q21 genetic association was sex-specific. Indeed, a TDT test showed that in the Saguenay-Lac-Saint-Jean familial collection, the 17q12-q21 association was significant among male, but not among female asthmatic subjects. We next hypothesized that the bias in the genetic association resulted from sex-specific and/or age-dependent DNA methylation at regulatory regions and determined the methylation profiles of five 17q12-q21 gene promoters using the bisulfite sequencing methylation assay. We identified a single regulatory region within the zona pellucida binding protein 2 (ZPBP2) gene, which showed statistically significant differences between males and females with respect to DNA methylation. DNA methylation also varied with age and was higher in adult males compared to boys. We have recently identified two functionally important polymorphisms, both within the ZPBP2 gene that influence expression levels of neighboring genes. Combined with the results of the present work, these data converge pointing to the same 5 kb region within the ZPBP2 gene as a critical region for both gene expression regulation and predisposition to asthma. Our data show that sex- and age-dependent DNA methylation may act as a modifier of genetic effects and influence the results of genetic association studies.

journal_name

Hum Genet

journal_title

Human genetics

authors

Naumova AK,Al Tuwaijri A,Morin A,Vaillancourt VT,Madore AM,Berlivet S,Kohan-Ghadr HR,Moussette S,Laprise C

doi

10.1007/s00439-013-1298-z

subject

Has Abstract

pub_date

2013-07-01 00:00:00

pages

811-22

issue

7

eissn

0340-6717

issn

1432-1203

journal_volume

132

pub_type

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