Sphingomonas ginsengisoli sp. nov. and Sphingomonas sediminicola sp. nov.

Abstract:

:Two novel bacteria, designated strains Gsoil 634(T) and Dae 20(T), were isolated in South Korea from soil of a ginseng field and freshwater sediment, respectively and were characterized by a polyphasic approach to clarify their taxonomic positions. Phylogenetic analysis based on 16S rRNA gene sequences indicated that, although they probably represented two distinct species (indicated by a sequence similarity of 96.6 %), both strain Gsoil 634(T) and strain Dae 20(T) belonged to the genus Sphingomonas and were most closely related to 'Sphingomonas humi' PB323 (97.8 % and 96.7 % sequence similarity, respectively), Sphingomonas kaistensis PB56(T) (96.8 % and 96.7 %), Sphingomonas astaxanthinifaciens TDMA-17(T) (96.6 % and 95.4 %) and Sphingomonas jaspsi TDMA-16(T) (95.6 % and 95.8 %). For both novel strains, the major ubiquinone was Q-10, the major polyamine was homospermidine, the major cellular fatty acids included summed feature 7 (C(18 : 1)ω7c, C(18 : 1)ω9t and/or C(18 : 1)ω12t), C(17 : 1)ω6c and C(16 : 0), and the polar lipids included sphingoglycolipid. These chemotaxonomic data supported the affiliation of both strains to the genus Sphingomonas. However, the DNA-DNA relatedness value between strain Gsoil 634(T) and 'Sphingomonas humi' PB323(T) was 31 %. Moreover, the results of physiological and biochemical tests allowed the phenotypic differentiation of strains Gsoil 634(T) and Dae 20(T) from established members of the genus Sphingomonas. Based on these data, the two isolates represent two novel species in the genus Sphingomonas, for which the names Sphingomonas ginsengisoli sp. nov. (type strain Gsoil 634(T) = KCTC 12630(T) = DSM 18094(T) = LMG 23739(T)) and Sphingomonas sediminicola sp. nov. (type strain Dae 20(T)  = KCTC 12629(T) = DSM 18106(T) = LMG 23592(T)) are proposed.

authors

An DS,Liu QM,Lee HG,Jung MS,Kim SC,Lee ST,Im WT

doi

10.1099/ijs.0.039578-0

subject

Has Abstract

pub_date

2013-02-01 00:00:00

pages

496-501

issue

Pt 2

eissn

1466-5026

issn

1466-5034

journal_volume

63

pub_type

杂志文章
  • Devosia ginsengisoli sp. nov., isolated from ginseng cultivation soil.

    abstract::A Gram-stain-negative, strictly aerobic, motile, ivory-coloured and rod-shaped bacterium (designated Gsoil 520T) isolated from ginseng cultivation soil was characterized by using a polyphasic approach to clarify its taxonomic position. Strain Gsoil 520T was observed to grow optimally at 30 °C and pH 7.0 on Reasoner's ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003843

    authors: Quan XT,Siddiqi MZ,Liu QZ,Lee SM,Im WT

    更新日期:2020-03-01 00:00:00

  • Reclassification of Staphylococcus pulvereri Zakrzewska-Czerwinska et al. 1995 as a later synonym of Staphylococcus vitulinus Webster et al. 1994.

    abstract::A polyphasic taxonomic approach was applied to strains of the species Staphylococcus vitulinus and Staphylococcus pulvereri in order to clarify their taxonomic relatedness. Four reference strains, representing both species, and seven strains isolated from human clinical material were characterized by biotyping, riboty...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63080-0

    authors: Švec P,Vancanneyt M,Sedláček I,Engelbeen K,Štětina V,Swings J,Petráš P

    更新日期:2004-11-01 00:00:00

  • Paenibacillus silvae sp. nov., isolated from a tropical rainforest soil.

    abstract::Two Gram-stain-positive, facultatively aerobic, endospore-forming and rod-shaped bacteria, designated DB13031T and DB13311, were isolated from the soil of the Jiaxi Nature Reserve in Hainan, PR China. 16S rRNA gene analysis of strains DB13031T and DB13311 showed that they fell within the Paenibacillus cluster, with hi...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001608

    authors: Huang H,Zhang F,Liu M,Cui Y,Sun Q,Zhu J,Zou X,Bao S

    更新日期:2017-04-01 00:00:00

  • Aquipuribacter hungaricus gen. nov., sp. nov., an actinobacterium isolated from the ultrapure water system of a power plant.

    abstract::A Gram-positive actinobacterium, strain IV-75(T), was isolated by using R2A agar from the ultrapure water system of a power plant in Hungary. The strain exhibited a rod-coccus cell cycle, and was strictly aerobic, non-motile, catalase-positive and oxidase-negative. 16S rRNA gene sequence analysis revealed that strain ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.032672-0

    authors: Tóth EM,Kéki Z,Bohus V,Borsodi AK,Márialigeti K,Schumann P

    更新日期:2012-03-01 00:00:00

  • Devriesea agamarum gen. nov., sp. nov., a novel actinobacterium associated with dermatitis and septicaemia in agamid lizards.

    abstract::Five bacterial isolates were recovered from dermatitis or organ lesions of five agamid lizards. Three strains were recovered from Uromastyx species with dermatitis or septicaemia. All five isolates were Gram-positive small rods that could not be identified using conventional phenotypic systems. They grew on sheep bloo...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65478-0

    authors: Martel A,Pasmans F,Hellebuyck T,Haesebrouck F,Vandamme P

    更新日期:2008-09-01 00:00:00

  • Sphingomonas soli sp. nov., a beta-glucosidase-producing bacterium in the family Sphingomonadaceae in the alpha-4 subgroup of the Proteobacteria.

    abstract::Strain T5-04T, a Gram-negative, non-spore-forming, rod-shaped bacterium, was isolated from soil of a ginseng field in South Korea and characterized in order to determine its taxonomic position. 16S rRNA gene sequence analysis revealed that strain T5-04T belongs to the alpha-4 subgroup of the Proteobacteria, and the hi...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63839-0

    authors: Yang DC,Im WT,Kim MK,Ohta H,Lee ST

    更新日期:2006-04-01 00:00:00

  • Dyadobacter crusticola sp. nov., from biological soil crusts in the Colorado Plateau, USA, and an emended description of the genus Dyadobacter Chelius and Triplett 2000.

    abstract::Bacterial strain CP183-8(T) was isolated from biological soil crusts collected in the Colorado Plateau, USA. Cells of this strain were aerobic, non-motile, Gram-negative, psychrotolerant and formed beaded chains in the stationary growth phase. They contained C(16 : 1)omega5c and C(16 : 1)omega7c as major fatty acids. ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63498-0

    authors: Reddy GSN,Garcia-Pichel F

    更新日期:2005-05-01 00:00:00

  • Corynebacterium suicordis sp. nov., from pigs.

    abstract::Nineteen strains of Gram-positive, non-motile, non-spore-forming, catalase-positive, rod-shaped bacteria isolated from pigs were characterized by using biochemical, molecular chemical and molecular genetic methods. Two distinct groups of organisms were discerned, based on their colonial morphology, CAMP (Christie-Atki...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02645-0

    authors: Vela AI,Mateos A,Collins MD,Briones V,Hutson RA,Domínguez L,Fernández-Garayzábal JF

    更新日期:2003-11-01 00:00:00

  • Alkaliphilus transvaalensis gen. nov., sp. nov., an extremely alkaliphilic bacterium isolated from a deep South African gold mine.

    abstract::A novel extreme alkaliphile was isolated from a mine water containment dam at 3.2 km below land surface in an ultra-deep gold mine near Carletonville, South Africa. The cells of this bacterium were straight to slightly curved rods, motile by flagella and formed endospores. Growth was observed over the temperature rang...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-51-4-1245

    authors: Takai K,Moser DP,Onstott TC,Spoelstra N,Pfiffner SM,Dohnalkova A,Fredrickson JK

    更新日期:2001-07-01 00:00:00

  • Streptimonospora salina gen. nov., sp. nov., a new member of the family Nocardiopsaceae.

    abstract::Actinomycete strain YIM 90002T (= CCTCC 99003T = CCRC 16284T) was isolated from a soil sample collected from a salt lake in the west of China. The aerial mycelium of this organism is well developed but not fragmented and, at maturity, forms short chains of spores. Spores in short chains are oval- to rod-shaped and hav...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-51-2-357

    authors: Cui XL,Mao PH,Zeng M,Li WJ,Zhang LP,Xu LH,Jiang CL

    更新日期:2001-03-01 00:00:00

  • Altererythrobacter salegens sp. nov., a slightly halophilic bacterium isolated from surface sediment.

    abstract::A Gram-negative, rod-shaped and slightly halophilic bacterium, strain XY-R17T, was isolated from the surface sediment of Mai Po Inner Deep Bay Ramsar Site birdwatch in Hong Kong. The 16S rRNA gene sequence of strain XY-R17T exhibited 96.5 % similarity to that of the type strain of Altererythrobacter atlanticus. Optima...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001708

    authors: Liang X,Lin H,Wang K,Liao Y,Lai Q,Xu Y,Wang C

    更新日期:2017-04-01 00:00:00

  • Lactobacillus fornicalis sp. nov., isolated from the posterior fornix of the human vagina.

    abstract::Twelve strains isolated from the posterior fornix fluid of the human vagina were identified as Lactobacillus johnsonii, Lactobacillus acidophilus, Lactobacillus gallinarum and Lactobacillus crispatus based on numerical analyses of total soluble cell protein profiles and randomly amplified polymorphic DNA (RAPD)-PCR ba...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-50-3-1253

    authors: Dicks LM,Silvester M,Lawson PA,Collins MD

    更新日期:2000-05-01 00:00:00

  • Altererythrobacter fulvus sp. nov., a novel alkalitolerant alphaproteobacterium isolated from forest soil.

    abstract::A novel α-proteobacterium, designated strain S-54T, was isolated from forest soil sampled at Kyonggi University and subjected to polyphasic study. Cells were aerobic, Gram-stain-negative, catalase- and oxidase-positive, non-motile, non-spore-forming, rod-shaped and yellow-pigmented. Flexirubin-type pigments were absen...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002697

    authors: Dahal RH,Kim J

    更新日期:2018-05-01 00:00:00

  • Deinococcus saudiensis sp. nov., isolated from desert.

    abstract::Two gamma- and UV-radiation-resistant, pink-coloured bacterial strains, designated YIM F302T and YIM F235, were isolated from the desert of Yanbu' al Bahr located in west of Saudi Arabia. Taxonomic positions of the two isolates were investigated by polyphasic taxonomic approaches. Cells of the two strains were Gram-st...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001479

    authors: Hussain F,Khan IU,Habib N,Xian WD,Hozzein WN,Zhang ZD,Zhi XY,Li WJ

    更新日期:2016-12-01 00:00:00

  • Bradyrhizobium mercantei sp. nov., a nitrogen-fixing symbiont isolated from nodules of Deguelia costata (syn. Lonchocarpus costatus).

    abstract::Some bacteria collectively known as rhizobia can establish symbiotic relationships and the N2-fixation process with several legumes used as green manure, in pastures and for wood production. Symbionts belonging to the genus Bradyrhizobium are predominant in the tropics, and an increasing number of studies report high ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001870

    authors: Helene LCF,Delamuta JRM,Ribeiro RA,Hungria M

    更新日期:2017-06-01 00:00:00

  • Brevirhabdus pacifica gen. nov., sp. nov., isolated from deep-sea sediment in a hydrothermal vent field.

    abstract::A Gram-stain-negative, motile, aerobic bacterial strain, designated 22DY15T, was isolated from a deep-sea sediment sample collected from a hydrothermal vent field located in the East Pacific Rise. The isolate was a short rod with a single flagellum and was positive for catalase and oxidase activities. Q-10 was the pre...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000469

    authors: Wu YH,Xu L,Zhou P,Wang CS,Oren A,Xu XW

    更新日期:2015-10-01 00:00:00

  • Bacillus iranensis sp. nov., a moderate halophile from a hypersaline lake.

    abstract::A Gram-positive, moderately halophilic rod, designated X5BT, was isolated from saline mud of the hypersaline lake Aran-Bidgol in Iran. Strain X5BT was a strictly aerobic, motile bacterium that produced ellipsoidal endospores at a central-subterminal position in non-swollen sporangia. The isolate grew at pH 7.0-10.0 (o...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.030874-0

    authors: Bagheri M,Didari M,Amoozegar MA,Schumann P,Sánchez-Porro C,Mehrshad M,Ventosa A

    更新日期:2012-04-01 00:00:00

  • Nocardioides ginsengagri sp. nov., isolated from the soil of a ginseng field.

    abstract::A Gram-reaction-positive, rod-shaped, non-motile, non-spore-forming bacterium (strain BX5-10(T)) was isolated from the soil of a ginseng field on Baekdu Mountain in Jilin district, China. The taxonomic position of this bacterium was determined in an investigation based on a polyphasic approach. On the basis of 16S rRN...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.031823-0

    authors: Lee SH,Liu QM,Lee ST,Kim SC,Im WT

    更新日期:2012-03-01 00:00:00

  • Alistipes inops sp. nov. and Coprobacter secundus sp. nov., isolated from human faeces.

    abstract::Culture-based study of the faecal microbiome in two adult female subjects revealed the presence of two obligately anaerobic, non-spore-forming, rod-shaped, non-motile, Gram-negative bacterial strains that represent novel species. The first strain, designated 627T, was a fastidious, slow-growing, indole-positive bacter...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000617

    authors: Shkoporov AN,Chaplin AV,Khokhlova EV,Shcherbakova VA,Motuzova OV,Bozhenko VK,Kafarskaia LI,Efimov BA

    更新日期:2015-12-01 00:00:00

  • Undibacterium danionis sp. nov. isolated from a zebrafish (Danio rerio).

    abstract::One beige-pigmented, Gram-stain-negative, rod-shaped bacterium, strain E3/4T, was isolated from a zebrafish, Danio rerio. Phylogenetic analysis based on nearly full-length 16S rRNA gene sequences showed that the isolate shared 98.5 % 16S rRNA gene sequence identity to the type strain of Undibacterium macrobrachii and ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001244

    authors: Kämpfer P,Irgang R,Busse HJ,Poblete-Morales M,Kleinhagauer T,Glaeser SP,Avendaño-Herrera R

    更新日期:2016-09-01 00:00:00

  • Moniliella byzovii sp. nov., a chlamydospore-forming black yeast isolated from flowers.

    abstract::Yeasts of the genus Moniliella were isolated from 651 flower samples collected in Vietnam, using an enrichment medium containing 50 % glucose. Species of the genus Moniliella were found in 5 % of the samples and 54 strains were isolated. The strains were identified based on D1/D2 LSU rRNA gene sequences as M. megachil...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.049767-0

    authors: Thanh VN,Hien DD,Thom TT

    更新日期:2013-03-01 00:00:00

  • Streptomyces pini sp. nov., an actinomycete isolated from phylloplane of pine (Pinus sylvestris L.) needle-like leaves.

    abstract::A novel siderophore-producing actinomycete, designated PL19T, was isolated from the Scots-pine needle-like leaves collected from TNAU campus, Coimbatore, India. The isolate was chemoorganotrophic in nutrition and able to grow at 30 °C, and the optimum pH and NaCl facilitated the growth pH 6-11 and 0-8 % (w/v), respect...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001336

    authors: Madhaiyan M,Poonguzhali S,Saravanan VS,Duraipandiyan V,Al-Dhabi NA,Pragatheswari D,Santhanakrishnan P,Kim SJ,Weon HY,Kwon SW

    更新日期:2016-10-01 00:00:00

  • Longibacter salinarum gen. nov., sp. nov., isolated from a marine solar saltern.

    abstract::A bacterial strain, designated WDS2C18T, was isolated from a marine solar saltern from the coast of Weihai, Shandong Province, China. Cells of strain WDS2C18T were long rod-shaped, red, and approximately 6.0-12.0 µm in length and 0.3-0.4 µm in width. The strain was Gram-stain-negative, facultatively anaerobic, heterot...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001190

    authors: Xia J,Dunlap CA,Flor-Weiler L,Rooney AP,Chen GJ,Du ZJ

    更新日期:2016-09-01 00:00:00

  • Alteromonas marina sp. nov., isolated from sea water of the East Sea in Korea.

    abstract::Two Gram-negative, motile, non-spore-forming and moderately halophilic rods (strains SW-47(T) and SW-49) were isolated from sea water of the East Sea in Korea and subjected to a polyphasic taxonomic study. The two strains grew optimally between 30 and 37 degrees C, and grew at 4 and 44 degrees C but not at temperature...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02536-0

    authors: Yoon JH,Kim IG,Kang KH,Oh TK,Park YH

    更新日期:2003-09-01 00:00:00

  • Paracoccus panacisoli sp. nov., isolated from a forest soil cultivated with Vietnamese ginseng.

    abstract::A novel bacterial strain, designated DCY94(T), was isolated from forest soil cultivated with ginseng in Vietnam. The strain was Gram-reaction-negative, facultatively anaerobic, non-motile, rod-shaped and catalase- and oxidase-positive. 16S rRNA gene sequence analysis demonstrated that strain DCY94(T) was closely relat...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.000125

    authors: Nguyen NL,Kim YJ,Hoang VA,Tran BT,Pham HS,Yang DC

    更新日期:2015-05-01 00:00:00

  • Proposal of Yaniaceae fam. nov. and Yania flava sp. nov. and emended description of the genus Yania.

    abstract::A coccoid actinobacterium strain (designated YIM 70178(T)) was isolated from a soil sample collected in Qinghai Province, China. The isolate grew well with an optimum salt concentration of 10-15% (KCl, w/v) but scarcely or not at all without salt. The cell-wall peptidoglycan type was A4alpha, L-Lys-gly-L-Glu. The majo...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63594-0

    authors: Li WJ,Schumann P,Zhang YQ,Xu P,Chen GZ,Xu LH,Stackebrandt E,Jiang CL

    更新日期:2005-09-01 00:00:00

  • Brevibacterium daeguense sp. nov., a nitrate-reducing bacterium isolated from a 4-chlorophenol enrichment culture.

    abstract::A Gram-reaction-positive, non-spore-forming, aerobic actinobacterial strain (2C6-41(T)) was isolated from the activated sludge from an industrial wastewater treatment plant in Daegu, South Korea. Its taxonomic position was investigated by using a polyphasic approach. On the basis of 16S rRNA gene sequence similarity, ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.038141-0

    authors: Cui Y,Kang MS,Woo SG,Jin L,Kim KK,Park J,Lee M,Lee ST

    更新日期:2013-01-01 00:00:00

  • Altererythrobacter sediminis sp. nov., isolated from lagoon sediments.

    abstract::A Gram-stain-negative, non-motile, non-spore-forming, ovoid rod-shaped bacterium, designated strain CAU1172T, was isolated from lagoon sediments along the east coast of the Republic of Korea. Strain CAU1172T formed a yellow pigment on marine agar. Growth occurred at 20-37 °C (optimum, 30 °C), at pH 6.5-10 (optimum, 7....

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001535

    authors: Kim JH,Yoon JH,Kim W

    更新日期:2016-12-01 00:00:00

  • Paenibacillus solani sp. nov., isolated from potato rhizosphere soil.

    abstract::A novel Gram-stain-positive, endospore-forming bacterium, designated FJAT-22460T, was isolated from a soil sample of a potato field in Xinjiang Autonomous Region, China. Cells were rods that were catalase-positive and motile by peritrichous flagella. The strain was found to grow at temperatures ranging from 10 to 40 °...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001378

    authors: Liu B,Liu GH,Sengonca C,Schumann P,Lan JL,Chen DJ,Cui WD,Lin NQ

    更新日期:2016-11-01 00:00:00

  • Olivibacter soli sp. nov., Olivibacter ginsengisoli sp. nov. and Olivibacter terrae sp. nov., from soil of a ginseng field and compost in South Korea.

    abstract::Three novel strains, designated Gsoil 034T, Gsoil 060T and Jip13T, isolated from soil from a ginseng field and compost in South Korea, were characterized using a polyphasic approach to clarify their taxonomic positions. These isolates were found to be Gram-negative, aerobic and heterotrophic, non-spore-forming, non-mo...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65299-0

    authors: Wang L,Ten LN,Lee HG,Im WT,Lee ST

    更新日期:2008-05-01 00:00:00