Paenibacillus silvae sp. nov., isolated from a tropical rainforest soil.

Abstract:

:Two Gram-stain-positive, facultatively aerobic, endospore-forming and rod-shaped bacteria, designated DB13031T and DB13311, were isolated from the soil of the Jiaxi Nature Reserve in Hainan, PR China. 16S rRNA gene analysis of strains DB13031T and DB13311 showed that they fell within the Paenibacillus cluster, with highest similarities to Paenibacillus cucumis AP-115T (98.4 and 98.3 %, respectively), Paenibacillus barcinonensis BP-23T (98.3 and 98.2 %, respectively) and Paenibacillus oceanisediminis L10T (97.7 and 97.7 %, respectively). The DNA-DNA hybridization values between strain DB13031T and the type strains of its closest related species were 48.2, 38.1 and 43.5 %. Strain DB13031T contained menaquinone-7 (MK-7) as the predominant isoprenoid quinone and anteiso-C15 : 0, iso-C16 : 0 and C16 : 0 as the major cellular fatty acids. The cell-wall peptidoglycan was of the A1γ type and the major polar lipid profiles were diphosphatidylglycerol, phosphatidylethanolamine, four unknown aminophospholipids and four unknown phospholipids. Based on the phenotypic and genotypic data, it is proposed that the two isolates represent a novel species of the genus Paenibacillus, for which the name Paenibacillus silvae sp. nov. is proposed. The type strain is DB13031T (=CGMCC 1.12770T=DSM 28013T).

authors

Huang H,Zhang F,Liu M,Cui Y,Sun Q,Zhu J,Zou X,Bao S

doi

10.1099/ijsem.0.001608

subject

Has Abstract

pub_date

2017-04-01 00:00:00

pages

795-799

issue

4

eissn

1466-5026

issn

1466-5034

journal_volume

67

pub_type

杂志文章
  • Nocardioides humi sp. nov., a beta-glucosidase-producing bacterium isolated from soil of a ginseng field.

    abstract::Strain DCY24(T), a Gram-reaction-positive, aerobic, rod-shaped, motile bacterium, was isolated from soil of a ginseng field in South Korea. According to 16S rRNA gene sequence analysis, it was closely related to Nocardioides aromaticivorans DSM 15131(T) (95.1 % similarity), Nocardioides simplex KCTC 9106(T) (95.0 %), ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.008821-0

    authors: Kim MK,Srinivasan S,Park MJ,Sathiyaraj G,Kim YJ,Yang DC

    更新日期:2009-11-01 00:00:00

  • Rothia endophytica sp. nov., an actinobacterium isolated from Dysophylla stellata (Lour.) Benth.

    abstract::A novel endophytic actinobacterium, designated strain YIM 67072(T), was isolated from healthy roots of Dysophylla stellata (Lour.) Benth. Cells of this aerobic, cream-yellow-coloured strain occurred singly, in pairs or in tetrads, were Gram-stain-positive and ovoid- to spherical-shaped. Strain YIM 67072(T) grew at 4-4...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.052522-0

    authors: Xiong ZJ,Zhang JL,Zhang DF,Zhou ZL,Liu MJ,Zhu WY,Zhao LX,Xu LH,Li WJ

    更新日期:2013-11-01 00:00:00

  • An unusual Streptococcus from human urine, Streptococcus urinalis sp. nov.

    abstract::Biochemical, molecular chemical and molecular genetic studies were performed on an unknown Gram-positive, catalase-negative, chain-forming coccus isolated from the urine of a patient suffering from cystitis. Comparative 16S rRNA gene sequencing showed that the organism is a member of the 'pyogenic subgroup' of the gen...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-50-3-1173

    authors: Collins MD,Hutson RA,Falsen E,Nikolaitchouk N,LaClaire L,Facklam RR

    更新日期:2000-05-01 00:00:00

  • Actinomadura adrarensis sp. nov., an actinobacterium isolated from Saharan soil.

    abstract::A novel actinobacterial strain, designated ACD12T, was isolated from a Saharan soil sample collected from Adrar province, southern Algeria. A polyphasic study was carried out to establish the taxonomic position of this strain. Strain ACD12T was observed to form extensively branched substrate mycelia. Aerial mycelium w...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001114

    authors: Lahoum A,Bouras N,Verheecke C,Mathieu F,Schumann P,Spröer C,Klenk HP,Sabaou N

    更新日期:2016-07-01 00:00:00

  • Flavobacterium fryxellicola sp. nov. and Flavobacterium psychrolimnae sp. nov., novel psychrophilic bacteria isolated from microbial mats in Antarctic lakes.

    abstract::Taxonomic studies were performed on seven strains isolated from microbial mats in Antarctic lakes of the McMurdo Dry Valleys. Phylogenetic analysis based on 16S rRNA gene sequences indicated that these strains are related to the genus Flavobacterium; sequence similarity values with their nearest phylogenetic neighbour...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.03056-0

    authors: Van Trappen S,Vandecandelaere I,Mergaert J,Swings J

    更新日期:2005-03-01 00:00:00

  • Amycolatopsis helveola sp. nov. and Amycolatopsis pigmentata sp. nov., isolated from soil.

    abstract::Three short spore chain-forming actinomycete strains were isolated from soil samples collected from subtropical islands in Japan. The cell-wall peptidoglycan of these strains contained meso-diaminopimelic acid (meso-A(2)pm), glutamic acid and alanine. The major isoprenoid quinone was MK-9(H(4)), iso-C(16 : 0) and 2-OH...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.017871-0

    authors: Tamura T,Ishida Y,Otoguro M,Suzuki KI

    更新日期:2010-11-01 00:00:00

  • Formation of compound generic names based on personal names: a proposal for emendation of Appendix 9 of the International Code of Nomenclature of Prokaryotes.

    abstract::Appendix 9, the orthography appendix of the International Code of Nomenclature of Prokaryotes, provides guidelines for the correct formation of generic names and specific epithets to honour famous microbiologists and other persons connected with natural science. However, no guidelines are given for the correct formati...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003192

    authors: Oren A,Chuvochina M,Ventura S

    更新日期:2019-02-01 00:00:00

  • Methylotenera oryzisoli sp. nov., a lanthanide-dependent methylotrophic bacteria isolated from rice field soil.

    abstract::A new lanthanide (Ln3+)-dependent methanol-utilizing bacterial strain, La3113T, was isolated from rice field soil and its taxonomic position was investigated using polyphasic approaches. The strain was aerobic, Gram-stain-negative, strongly motile, catalase-positive and cytochrome oxidase-positive. It could neither ca...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004098

    authors: Lv H,Sahin N,Tani A

    更新日期:2020-04-01 00:00:00

  • Actinomadura darangshiensis sp. nov., isolated from a volcanic cone.

    abstract::An actinobacterium, designated strain DLS-70(T), was isolated from a soil sample from the surface of a rock on the peak of Darangshi Oreum (a volcanic cone) in Jeju, Republic of Korea. Substrate mycelium was produced abundantly on most of the media tested. Spiral chains of spores with warty surface developed on the ae...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.000099

    authors: Lee SD,Kim SB

    更新日期:2015-05-01 00:00:00

  • Bacteroides xylanisolvens sp. nov., a xylan-degrading bacterium isolated from human faeces.

    abstract::During the course of a study on the xylan-degrading community from the human gut, six xylanolytic, Gram-negative, anaerobic rods were isolated from faecal samples. 16S rRNA gene sequence analysis showed that the isolates were closely related to each other (> or =99 % sequence similarity) and that they belonged to the ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65504-0

    authors: Chassard C,Delmas E,Lawson PA,Bernalier-Donadille A

    更新日期:2008-04-01 00:00:00

  • Mariniflexile jejuense sp. nov., isolated from the junction between seawater and a freshwater spring, and emended description of the genus Mariniflexile.

    abstract::A gram-negative, non-spore-forming, non-flagellated, motile-by-gliding rod, designated SSK2-3(T), was isolated from the junction between seawater and a freshwater spring at Jeju island, South Korea. Strain SSK2-3(T) grew optimally at 25-30 °C, at pH 7.0-7.5 and in the presence of 2 % (w/v) NaCl. Phylogenetic analysis ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.042796-0

    authors: Jung YT,Yoon JH

    更新日期:2013-04-01 00:00:00

  • Nocardioides perillae sp. nov., isolated from surface-sterilized roots of Perilla frutescens.

    abstract::A Gram-stain-positive, rod-shaped actinobacterium, designated strain I10A-01402(T), was isolated from surface-sterilized roots of a medicinal plant, Perilla frutescens, collected in a suburb of Beijing, China. Chemotaxonomically, the strain contained ll-diaminopimelic acid as the diagnostic diamino acid and MK-8(H4) a...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.044982-0

    authors: Du HJ,Wei YZ,Su J,Liu HY,Ma BP,Guo BL,Zhang YQ,Yu LY

    更新日期:2013-03-01 00:00:00

  • Cystobasidium halotolerans sp. nov., a novel basidiomycetous yeast species isolated from the Arabian Gulf.

    abstract::Two strains, 1Y129 and 3Y383, which represent a single novel anamorphic yeast species, were isolated from the Arabian Gulf surrounding Qatar. The two strains have identical sequences in the D1/D2 domains of the large subunit (LSU) and the internal transcribed spacer (ITS) regions of the rRNA gene. On the basis of this...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003250

    authors: Fotedar R,Fell JW,Boekhout T,Kolecka A,Zeyara A,Kaul R,Malki AA,Marri MA

    更新日期:2019-03-01 00:00:00

  • Microbacterium insulae sp. nov., isolated from soil.

    abstract::A Gram-positive, non-motile, rod- or coccoid-shaped Microbacterium-like bacterium, designated strain DS-66(T), was isolated from soil of Dokdo, Korea, and its exact taxonomic position was investigated by using a polyphasic approach. Strain DS-66(T) grew optimally at 30 degrees C and pH 6.5-7.0 in the presence of 0.5-1...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.007591-0

    authors: Yoon JH,Schumann P,Kang SJ,Lee CS,Lee SY,Oh TK

    更新日期:2009-07-01 00:00:00

  • Marmoricola ginsengisoli sp. nov. and Marmoricola pocheonensis sp. nov. isolated from a ginseng-cultivating field.

    abstract::Two novel actinobacteria, designated strains Gsoil 097T and Gsoil 818T, isolated from soil of a ginseng field, South Korea, were characterized by a polyphasic approach to clarify their taxonomic positions. They were Gram-reaction-positive, aerobic, non-spore-forming and rod-shaped. Phylogenetic analysis based on 16S r...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000977

    authors: Lee HY,Liu Q,Kang MS,Kim SK,Lee SY,Im WT

    更新日期:2016-05-01 00:00:00

  • International Code of Nomenclature of Prokaryotes.

    abstract::This volume contains the edition of the International Code of Nomenclature of Prokaryotes that was presented in draft form and available for comment at the Plenary Session of the Fourteenth International Congress of Bacteriology and Applied Microbiology (BAM), Montréal, 2014, together with updated lists of conserved a...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000778

    authors:

    更新日期:2019-01-01 00:00:00

  • Rhodococcus cerastii sp. nov. and Rhodococcus trifolii sp. nov., two novel species isolated from leaf surfaces.

    abstract::Two Gram-positive, non-endospore-forming rods, strains C5(T) and T8(T), were isolated from the phyllospheres of Cerastium holosteoides and Trifolium repens, respectively, and were studied in detail for their taxonomic position. 16S rRNA gene sequence analysis allocated both isolates clearly to the genus Rhodococcus. I...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.044958-0

    authors: Kämpfer P,Wellner S,Lohse K,Lodders N,Martin K

    更新日期:2013-03-01 00:00:00

  • Anaerophaga thermohalophila gen. nov., sp. nov., a moderately thermohalophilic, strictly anaerobic fermentative bacterium.

    abstract::The strictly anaerobic gram-negative bacterium strain Fru22T grows at 50 degrees C in media containing up to 75 g NaCl l(-1). Hexoses and pentoses are fermented to equal molar amounts of acetate, propionate and succinate, and no CO2 is formed. An orange-red pigment similar to flexirrubin is produced during stationary ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-52-1-173

    authors: Denger K,Warthmann R,Ludwig W,Schink B

    更新日期:2002-01-01 00:00:00

  • Geobacter luticola sp. nov., an Fe(III)-reducing bacterium isolated from lotus field mud.

    abstract::A novel species of Fe(III)-reducing bacterium, designated strain OSK6(T), belonging to the genus Geobacter, was isolated from lotus field mud in Japan. Strain OSK6(T) was isolated using a solid medium containing acetate, Fe(III)-nitrilotriacetate (NTA) and gellan gum. The isolate is a strictly anaerobic, gram-negative...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.039321-0

    authors: Viulu S,Nakamura K,Okada Y,Saitou S,Takamizawa K

    更新日期:2013-02-01 00:00:00

  • Taxonomic relationships among the taxa in the Candida guilliermondii complex, as revealed by comparative electrophoretic karyotyping.

    abstract::Electrophoretic karyotypes of 15 type strains of the taxa in the Candida guilliermondii complex including Candida fukuyamaensis Nakase et al. and Candida xestobii Yarrow et S. A. Meyer were comparatively analysed by using the CHEF (contour-clamped homogeneous electric field) method of PFGE. Eighteen strains (isolated ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-50-1-417

    authors: Bai FY,Liang HY,Jia JH

    更新日期:2000-01-01 00:00:00

  • Erythrobacter aquimixticola sp. nov., isolated from the junction between the ocean and a freshwater spring.

    abstract::A Gram-stain-negative, aerobic, non-motile and coccoid, ovoid or rod-shaped bacterial strain, designated JSSK-14T, was isolated from the place where the ocean and a freshwater spring meet at Jeju island, South Korea. Strain JSSK-14T grew optimally at pH 7.0-8.0, at 30 °C and in the presence of 1.0-2.0 % (w/v) NaCl. A ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002055

    authors: Park S,Jung YT,Choi SJ,Yoon JH

    更新日期:2017-08-01 00:00:00

  • Halorubrum aquaticum sp. nov., an archaeon isolated from hypersaline lakes.

    abstract::Two halophilic archaea, strains EN-2(T) and SH-4, were isolated from the saline lakes Erliannor and Shangmatala, respectively, in Inner Mongolia, China. Cells were strictly aerobic, motile rods. Colonies were red. Strains EN-2(T) and SH-4 were able to grow at 25-50 °C (optimum 35-40 °C), with 2.5-5.0 M NaCl (optimum 3...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.025015-0

    authors: Gutiérrez MC,Castillo AM,Corral P,Kamekura M,Ventosa A

    更新日期:2011-05-01 00:00:00

  • Cecembia calidifontis sp. nov., isolated from a hot spring runoff, and emended description of the genus Cecembia.

    abstract::Two red-pigmented isolates, designated RQ-33(T) and TU-13, were recovered from hot spring runoffs on the Island of São Miguel in the Azores, Portugal. These organisms have an optimum growth temperature of approximately 45 °C and an optimum pH for growth between 7.5 and 8.5. Based on 16S rRNA gene sequence analysis, th...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.044537-0

    authors: Albuquerque L,Tiago I,Nobre MF,Veríssimo A,da Costa MS

    更新日期:2013-04-01 00:00:00

  • Massilia eurypsychrophila sp. nov. a facultatively psychrophilic bacteria isolated from ice core.

    abstract::Strain B528-3(T), a Gram-stain-negative, rod-shaped, aerobic, facultatively psychrophilic bacterium with polar flagella, was isolated from an ice core drilled from Muztagh Glacier, Xinjiang, China. The novel isolate was classified into the genus Massilia. The 16S rRNA gene sequence of the novel isolate shares a pairwi...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.000229

    authors: Shen L,Liu Y,Gu Z,Xu B,Wang N,Jiao N,Liu H,Zhou Y

    更新日期:2015-07-01 00:00:00

  • Salinibacter ruber gen. nov., sp. nov., a novel, extremely halophilic member of the Bacteria from saltern crystallizer ponds.

    abstract::Five brightly red-pigmented, motile, rod-shaped, extremely halophilic bacteria were isolated from saltern crystallizer ponds in Alicante (two strains) and Mallorca (three strains), Spain. They grew optimally at salt concentrations between 20 and 30% and did not grow below 15% salts. Thus, these isolates are among the ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-52-2-485

    authors: Antón J,Oren A,Benlloch S,Rodríguez-Valera F,Amann R,Rosselló-Mora R

    更新日期:2002-03-01 00:00:00

  • Lactobacillus arizonensis sp. nov., isolated from jojoba meal.

    abstract::Five strains of simmondsin-degrading, lactic-acid-producing bacteria were isolated from fermented jojoba meal. These isolates were facultatively anaerobic, gram-positive, non-motile, non-spore-forming, homofermentative, rod-shaped organisms. They grew singly and in short chains, produced lactic acid but no gas from gl...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-50-5-1803

    authors: Swezey JL,Nakamura LK,Abbott TP,Peterson RE

    更新日期:2000-09-01 00:00:00

  • A multigene approach to phylogenetic analysis using the genus Mycobacterium as a model.

    abstract::Advances in DNA sequencing and the increasing number of sequences available in databases have greatly enhanced the bacterial identification process. Several species within the genus Mycobacterium cause serious human and animal diseases. In order to assess their relative positions in the evolutionary process, four gene...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63222-0

    authors: Devulder G,de Montclos MP,Flandrois JP

    更新日期:2005-01-01 00:00:00

  • Proposal of Rhodoplanes tepidamans sp. nov. to accommodate the thermotolerant phototrophic bacterium previously referred to as 'Rhodoplanes (Rhodopseudomonas) cryptolactis'.

    abstract::Previously we proposed the reclassification of a thermotolerant phototrophic bacterium, 'Rhodopseudomonas cryptolactis' Stadtwald-Demchick et al. 1990, as 'Rhodoplanes cryptolactis' nom. rev., comb. nov. with strain DSM 9987T (ATCC 49414T) as the type strain. However, while both the names 'Rhodopseudomonas cryptolacti...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001752

    authors: Hiraishi A,Okamura K

    更新日期:2017-05-01 00:00:00

  • Thermocatellispora soli sp. nov., isolated from hot spring soil.

    abstract::An aerobic, spore-forming, actinomycete, designated strain CHM3-46T, was isolated from soil in a hot spring pond located in Chiangmai province, Thailand. The strain exhibited taxonomic characteristics consistent with the genus Thermocatellispora. Strain CHM3-46T produced short, straight chains of warty spores on aeria...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003115

    authors: Duangupama T,Pittayakhajonwut P,Thawai C

    更新日期:2019-01-01 00:00:00

  • Methanosalsum natronophilum sp. nov., and Methanocalculus alkaliphilus sp. nov., haloalkaliphilic methanogens from hypersaline soda lakes.

    abstract::Two groups of haloalkaliphilic methanogenic archaea were dominating in enrichments from hypersaline soda lake sediments at pH 10. At moderate salt concentrations with formate or H2 as electron donor, methanogens belonging to the genus Methanocalculus were enriched, while at high salt concentrations with methylated sub...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000488

    authors: Sorokin DY,Abbas B,Merkel AY,Rijpstra WIC,Damsté JSS,Sukhacheva MV,van Loosdrecht MCM

    更新日期:2015-10-01 00:00:00