当前位置： SCI文献检索 > NEUROIMAGE期刊下所有文献 > An evaluation of four automatic methods of segmenting the subcortical structures in the brain.

An evaluation of four automatic methods of segmenting the subcortical structures in the brain.

Abstract：

:The automation of segmentation of subcortical structures in the brain is an active research area. We have comprehensively evaluated four novel methods of fully automated segmentation of subcortical structures using volumetric, spatial overlap and distance-based measures. Two methods are atlas-based - classifier fusion and labelling (CFL) and expectation-maximisation segmentation using a brain atlas (EMS), and two incorporate statistical models of shape and appearance - profile active appearance models (PAM) and Bayesian appearance models (BAM). Each method was applied to the segmentation of 18 subcortical structures in 270 subjects from a diverse pool varying in age, disease, sex and image acquisition parameters. Our results showed that all four methods perform on par with recently published methods. CFL performed better than the others according to all three classes of metrics. In summary over all structures, the ranking by the Dice coefficient was CFL, BAM, joint EMS and PAM. The Hausdorff distance ranked the methods as CFL, joint PAM and BAM, EMS, whilst percentage absolute volumetric difference ranked them as joint CFL and PAM, joint BAM and EMS. Furthermore, as we had four methods of performing segmentation, we investigated whether the results obtained by each method were more similar to each other than to the manual segmentations using Williams' Index. Reassuringly, the Williams' Index was close to 1 for most subjects (mean=1.02, sd=0.05), indicating better agreement of each method with the gold standard than with the other methods. However, 2% of cases (mainly amygdala and nucleus accumbens) had values outside 3 standard deviations of the mean.

journal_name

Neuroimage

journal_title

NeuroImage

authors

Babalola KO,Patenaude B,Aljabar P,Schnabel J,Kennedy D,Crum W,Smith S,Cootes T,Jenkinson M,Rueckert D

doi

10.1016/j.neuroimage.2009.05.029

subject

Has Abstract

pub_date

2009-10-01 00:00:00

pages

1435-47

issue

4

eissn

1053-8119

issn

1095-9572

pii

S1053-8119(09)00511-4

journal_volume

47

pub_type

杂志文章

相关文献

NEUROIMAGE文献大全
  • Propranolol selectively blocks the enhanced parietal old/new effect during long-term recollection of unpleasant pictures: a high density ERP study.

    abstract：:Evidence from both animal and human research suggests that the formation of emotional memories is triggered by the beta-adrenergic system. To confirm whether modulation of central beta-adrenergic transmission is specifically involved in the neural signature of memory performance, the pre-encoding effect of propranolol...

    journal_title：NeuroImage

    pub_type： 杂志文章,随机对照试验

    doi：10.1016/j.neuroimage.2009.10.025

    authors： Weymar M,Löw A,Modess C,Engel G,Gründling M,Petersmann A,Siegmund W,Hamm AO

    更新日期：2010-02-01 00:00:00

  • Multi-template analysis of human perirhinal cortex in brain MRI: Explicitly accounting for anatomical variability.

    abstract：RATIONAL:The human perirhinal cortex (PRC) plays critical roles in episodic and semantic memory and visual perception. The PRC consists of Brodmann areas 35 and 36 (BA35, BA36). In Alzheimer's disease (AD), BA35 is the first cortical site affected by neurofibrillary tangle pathology, which is closely linked to neural i...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2016.09.070

    authors： Xie L,Pluta JB,Das SR,Wisse LEM,Wang H,Mancuso L,Kliot D,Avants BB,Ding SL,Manjón JV,Wolk DA,Yushkevich PA

    更新日期：2017-01-01 00:00:00

  • Functional MRI with variable echo time acquisition.

    abstract：:A new functional MRI protocol that integrates variable echo time (TE) acquisition and a block-design paradigm is proposed and evaluated with finger-tapping motor task. Simulations and experimental data show that the blood oxygenation level-dependent (BOLD) sensitivity achieved with this approach is comparable to that ...

    journal_title：NeuroImage

    pub_type： 临床试验,杂志文章

    doi：10.1016/j.neuroimage.2003.08.013

    authors： Chen NK,Egorova S,Guttmann CR,Panych LP

    更新日期：2003-12-01 00:00:00

  • Nothing to lose: processing blindness to potential losses drives thrill and adventure seekers.

    abstract：:Sensation seeking has been linked to increased risk taking and is therefore crucial in influencing behavioral outcomes of risk-taking behavior. Using functional magnetic resonance imaging (fMRI), the neural underpinnings of risk appraisal were studied in a large subject sample (n=188), stratified according to thrill a...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2011.09.048

    authors： Kruschwitz JD,Simmons AN,Flagan T,Paulus MP

    更新日期：2012-02-01 00:00:00

  • Neuron density fundamentally relates to architecture and connectivity of the primate cerebral cortex.

    abstract：:Studies of structural brain connectivity have revealed many intriguing features of complex cortical networks. To advance integrative theories of cortical organization, an understanding is required of how connectivity interrelates with other aspects of brain structure. Recent studies have suggested that interareal conn...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2019.01.010

    authors： Beul SF,Hilgetag CC

    更新日期：2019-04-01 00:00:00

  • Investigation of the neurovascular coupling in positive and negative BOLD responses in human brain at 7 T.

    abstract：:Decreases in stimulus-dependent blood oxygenation level dependent (BOLD) signal and their underlying neurovascular origins have recently gained considerable interest. In this study a multi-echo, BOLD-corrected vascular space occupancy (VASO) functional magnetic resonance imaging (fMRI) technique was used to investigat...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2014.04.022

    authors： Huber L,Goense J,Kennerley AJ,Ivanov D,Krieger SN,Lepsien J,Trampel R,Turner R,Möller HE

    更新日期：2014-08-15 00:00:00

  • Quantitative imaging of spontaneous neuromagnetic activity for assessing cerebral ischemia using sLORETA-qm.

    abstract：:To image cerebral neural activity in ischemic areas, we proposed a novel technique to analyze spontaneous neuromagnetic fields based on standardized low-resolution brain electromagnetic tomography modified for a quantifiable method (sLORETA-qm). Using a 160-channel whole-head-type magnetoencephalographic system, cereb...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2009.07.039

    authors： Sakamoto S,Tanaka H,Tsuyuguchi N,Terakawa Y,Ohata K,Inoue Y,Miki Y,Hara M,Takahashi Y,Nitta K,Sawa H,Satone A,Ide W,Hashimoto I,Kamada H

    更新日期：2010-01-01 00:00:00

  • Anatomic constraints on cognitive theories of category specificity.

    abstract：:Many cognitive theories of semantic organization stem from reports of patients with selective, category-specific deficits for particular classes of objects (e.g., fruit). The anatomical assumptions underlying the competing claims can be evaluated with functional neuroimaging but the findings to date have been inconsis...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1006/nimg.2001.1002

    authors： Devlin JT,Moore CJ,Mummery CJ,Gorno-Tempini ML,Phillips JA,Noppeney U,Frackowiak RS,Friston KJ,Price CJ

    更新日期：2002-03-01 00:00:00

  • Longitudinal evaluation of demyelinated lesions in a multiple sclerosis model using ultrashort echo time magnetization transfer (UTE-MT) imaging.

    abstract：:Alterations in myelin integrity are involved in many neurological disorders and demyelinating diseases, such as multiple sclerosis (MS). Although magnetic resonance imaging (MRI) is the gold standard method to diagnose and monitor MS patients, clinically available MRI protocols show limited specificity for myelin dete...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2019.116415

    authors： Guglielmetti C,Boucneau T,Cao P,Van der Linden A,Larson PEZ,Chaumeil MM

    更新日期：2020-03-01 00:00:00

  • Challenges in image-guided therapy system design.

    abstract：:System development for image-guided therapy (IGT), or image-guided interventions (IGI), continues to be an area of active interest across academic and industry groups. This is an emerging field that is growing rapidly: major academic institutions and medical device manufacturers have produced IGT technologies that are...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2007.04.026

    authors： Dimaio S,Kapur T,Cleary K,Aylward S,Kazanzides P,Vosburgh K,Ellis R,Duncan J,Farahani K,Lemke H,Peters T,Lorensen WB,Gobbi D,Haller J,Clarke LL,Pizer S,Taylor R,Galloway R Jr,Fichtinger G,Hata N,Lawson K,Tempany

    更新日期：2007-01-01 00:00:00

  • Model-free fMRI group analysis using FENICA.

    abstract：:Exploratory analysis of functional MRI data allows activation to be detected even if the time course differs from that which is expected. Independent Component Analysis (ICA) has emerged as a powerful approach, but current extensions to the analysis of group studies suffer from a number of drawbacks: they can be compu...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2010.11.010

    authors： Schöpf V,Windischberger C,Robinson S,Kasess CH,Fischmeister FP,Lanzenberger R,Albrecht J,Kleemann AM,Kopietz R,Wiesmann M,Moser E

    更新日期：2011-03-01 00:00:00

  • Elevating intracranial pressure reverses the decrease in deoxygenated hemoglobin and abolishes the post-stimulus overshoot upon somatosensory activation in rats.

    abstract：:BOLD fMRI localizes activated brain areas by measuring decreases of deoxygenated hemoglobin (deoxy-Hb) caused by neurovascular coupling. To date, it is unclear whether intracranial pressure (ICP) modifies deoxy-Hb signaling for brain mapping. In addition, ICP elevation can test whether the BOLD post-stimulus undershoo...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2010.04.237

    authors： Füchtemeier M,Leithner C,Offenhauser N,Foddis M,Kohl-Bareis M,Dirnagl U,Lindauer U,Royl G

    更新日期：2010-08-15 00:00:00

  • Can magnetoencephalography track the afferent information flow along white matter thalamo-cortical fibers?

    abstract：:White matter thalamo-cortical fibers allow the communication of distant brain regions by carrying neuronal signals. Mapping non-invasively the information flow within white matter fibers is regarded so far as impossible. We investigated here whether information flow propagating along thalamo-cortical fibers can be det...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2012.01.054

    authors： Papadelis C,Leonardelli E,Staudt M,Braun C

    更新日期：2012-04-02 00:00:00

  • Individual differences in rCBF correlates of syntactic processing in sentence comprehension: effects of working memory and speed of processing.

    abstract：:Positron emission tomography (PET) was used to determine the effect of working memory and speed of sentence processing on regional cerebral blood flow (rCBF) during syntactic processing in sentence comprehension. PET activity associated with making plausibility judgments about syntactically more complex subject-object...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/s1053-8119(03)00007-7

    authors： Waters G,Caplan D,Alpert N,Stanczak L

    更新日期：2003-05-01 00:00:00

  • An fMRI investigation of the effects of culture on evaluations of stigmatized individuals.

    abstract：:Certain groups (e.g., women, older adults, and the economically disadvantaged) are universally stigmatized. Numerous studies, however, have identified cross-cultural differences in the attitudes expressed toward stigmatized groups. These differences may potentially be due to existing cross-cultural dissimilarities in ...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2015.08.030

    authors： Krendl AC

    更新日期：2016-01-01 00:00:00

  • TMS of supplementary motor area (SMA) facilitates mental rotation performance: Evidence for sequence processing in SMA.

    abstract：:In the present study we applied online transcranial magnetic stimulation (TMS) bursts at 10Hz to the supplementary motor area (SMA) and primary motor cortex to test whether these regions are causally involved in mental rotation. Furthermore, in order to investigate what is the specific role played by SMA and primary m...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2016.10.032

    authors： Cona G,Marino G,Semenza C

    更新日期：2017-02-01 00:00:00

  • Assessment of the early organization and maturation of infants' cerebral white matter fiber bundles: a feasibility study using quantitative diffusion tensor imaging and tractography.

    abstract：:The human infant is particularly immature at birth and brain maturation, with the myelination of white matter fibers, is protracted until adulthood. Diffusion tensor imaging offers the possibility to describe non invasively the fascicles spatial organization at an early stage and to follow the cerebral maturation with...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2005.11.022

    authors： Dubois J,Hertz-Pannier L,Dehaene-Lambertz G,Cointepas Y,Le Bihan D

    更新日期：2006-05-01 00:00:00

  • Cingulate cortex function and multi-modal connectivity mapped using intracranial stimulation.

    abstract：:The cingulate cortex is part of the limbic system. Its function and connectivity are organized in a rostro-caudal and ventral-dorsal manner which was addressed by various other studies using rather coarse cortical parcellations. In this study, we aim at describing its function and connectivity using invasive recording...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2020.117059

    authors： Oane I,Barborica A,Chetan F,Donos C,Maliia MD,Arbune AA,Daneasa A,Pistol C,Nica AE,Bajenaru OA,Mindruta I

    更新日期：2020-10-15 00:00:00

  • Functional brain network organisation of children between 2 and 5 years derived from reconstructed activity of cortical sources of high-density EEG recordings.

    abstract：:There is increasing interest in applying connectivity analysis to brain measures (Rubinov and Sporns, 2010), but most studies have relied on fMRI, which substantially limits the participant groups and numbers that can be studied. High-density EEG recordings offer a comparatively inexpensive easy-to-use alternative, bu...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2013.06.003

    authors： Bathelt J,O'Reilly H,Clayden JD,Cross JH,de Haan M

    更新日期：2013-11-15 00:00:00

  • Registration and machine learning-based automated segmentation of subcortical and cerebellar brain structures.

    abstract：:The large amount of imaging data collected in several ongoing multi-center studies requires automated methods to delineate brain structures of interest. We have previously reported on using artificial neural networks (ANN) to define subcortical brain structures. Here we present several automated segmentation methods u...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2007.05.063

    authors： Powell S,Magnotta VA,Johnson H,Jammalamadaka VK,Pierson R,Andreasen NC

    更新日期：2008-01-01 00:00:00

  • Age- and sex-related effects on the neuroanatomy of healthy elderly.

    abstract：:Effects of age and sex, and their interaction on the structural brain anatomy of healthy elderly were assessed thanks to a cross-sectional study of a cohort of 662 subjects aged from 63 to 75 years. T1- and T2-weighted MRI scans were acquired in each subject and further processed using a voxel-based approach that was ...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2005.02.042

    authors： Lemaître H,Crivello F,Grassiot B,Alpérovitch A,Tzourio C,Mazoyer B

    更新日期：2005-07-01 00:00:00

  • Left hemisphere lateralization for lexical and acoustic pitch processing in Cantonese speakers as revealed by mismatch negativity.

    abstract：:For nontonal language speakers, speech processing is lateralized to the left hemisphere and musical processing is lateralized to the right hemisphere (i.e., function-dependent brain asymmetry). On the other hand, acoustic temporal processing is lateralized to the left hemisphere and spectral/pitch processing is latera...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2013.02.080

    authors： Gu F,Zhang C,Hu A,Zhao G

    更新日期：2013-12-01 00:00:00

  • Neuroanatomical substrates involved in true and false memories for face.

    abstract：:We often mistake an unknown person for a familiar person because of the similarities in facial features. This phenomenon, known as false memory, has been investigated mainly using words, pictures, and shapes. Previous neuroimaging studies on false memory have shown that both true and false memories trigger a similar a...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2012.04.044

    authors： Iidaka T,Harada T,Kawaguchi J,Sadato N

    更新日期：2012-08-01 00:00:00

  • Analyzing for information, not activation, to exploit high-resolution fMRI.

    abstract：:High-resolution functional magnetic resonance imaging (hi-res fMRI) promises to help bridge the gap between the macro- and the microview of brain function afforded by conventional neuroimaging and invasive cell recording, respectively. Hi-res fMRI (voxel volume

    journal_title：NeuroImage

    pub_type： 杂志文章,评审

    doi：10.1016/j.neuroimage.2007.02.022

    authors： Kriegeskorte N,Bandettini P

    更新日期：2007-12-01 00:00:00

  • Functional localization of the auditory thalamus in individual human subjects.

    abstract：:Here we describe an easily implemented protocol based on sparse MR acquisition and a scrambled 'music' auditory stimulus that allows for reliable measurement of functional activity within the medial geniculate body (MGB, the primary auditory thalamic nucleus) in individual subjects. We find that our method is equally ...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2013.04.035

    authors： Jiang F,Stecker GC,Fine I

    更新日期：2013-09-01 00:00:00

  • Early childhood development of white matter fiber density and morphology.

    abstract：:Early childhood is an important period for cognitive and brain development, though white matter changes specific to this period remain understudied. Here we utilize a novel analytic approach to quantify and track developmental changes in white matter micro- and macro-structure, calculated from individually oriented fi...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2020.116552

    authors： Dimond D,Rohr CS,Smith RE,Dhollander T,Cho I,Lebel C,Dewey D,Connelly A,Bray S

    更新日期：2020-04-15 00:00:00

  • Analysis of fMRI time-series revisited--again.

    abstract：:Friston et al. (1995, NeuroImage 2:45-53) presented a method for detecting activations in fMRI time-series based on the general linear model and a heuristic analysis of the effective degrees of freedom. In this communication we present corrected results that replace those of the previous paper and solve the same probl...

    journal_title：NeuroImage

    pub_type： 评论,杂志文章

    doi：10.1006/nimg.1995.1023

    authors： Worsley KJ,Friston KJ

    更新日期：1995-09-01 00:00:00

  • A Bayesian spatiotemporal model for very large data sets.

    abstract：:Functional MRI provides a unique perspective of neuronal organization; however, these data include many complex sources of spatiotemporal variability, which require spatial preprocessing and statistical analysis. For the latter, Bayesian models provide a promising alternative to classical inference, which uses results...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2009.12.042

    authors： Harrison LM,Green GG

    更新日期：2010-04-15 00:00:00

  • Symbolic action priming relies on intact neural transmission along the retino-geniculo-striate pathway.

    abstract：:Recent psychophysics studies suggest that the behavioral impact of a visual stimulus and its conscious visual recognition underlie two functionally dissociated neuronal processes. Previous TMS studies have demonstrated that certain features of a visual stimulus can still be processed despite TMS-induced disruption of ...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2008.07.030

    authors： Sack AT,van der Mark S,Schuhmann T,Schwarzbach J,Goebel R

    更新日期：2009-01-01 00:00:00

  • Bayesian Optimisation of Large-Scale Biophysical Networks.

    abstract：:The relationship between structure and function in the human brain is well established, but not yet well characterised. Large-scale biophysical models allow us to investigate this relationship, by leveraging structural information (e.g. derived from diffusion tractography) in order to couple dynamical models of local ...

    journal_title：NeuroImage

    pub_type： 杂志文章

    doi：10.1016/j.neuroimage.2018.02.063

    authors： Hadida J,Sotiropoulos SN,Abeysuriya RG,Woolrich MW,Jbabdi S

    更新日期：2018-07-01 00:00:00