Registration and machine learning-based automated segmentation of subcortical and cerebellar brain structures.

Abstract:

:The large amount of imaging data collected in several ongoing multi-center studies requires automated methods to delineate brain structures of interest. We have previously reported on using artificial neural networks (ANN) to define subcortical brain structures. Here we present several automated segmentation methods using multidimensional registration. A direct comparison between template, probability, artificial neural network (ANN) and support vector machine (SVM)-based automated segmentation methods is presented. Three metrics for each segmentation method are reported in the delineation of subcortical and cerebellar brain regions. Results show that the machine learning methods outperform the template and probability-based methods. Utilization of these automated segmentation methods may be as reliable as manual raters and require no rater intervention.

journal_name

Neuroimage

journal_title

NeuroImage

authors

Powell S,Magnotta VA,Johnson H,Jammalamadaka VK,Pierson R,Andreasen NC

doi

10.1016/j.neuroimage.2007.05.063

subject

Has Abstract

pub_date

2008-01-01 00:00:00

pages

238-47

issue

1

eissn

1053-8119

issn

1095-9572

pii

S1053-8119(07)00713-6

journal_volume

39

pub_type

杂志文章
  • Non-invasive, in vivo monitoring of neuronal transport impairment in a mouse model of tauopathy using MEMRI.

    abstract::The impairment of axonal transport by overexpression or hyperphosphorylation of tau is well documented for in vitro conditions; however, only a few studies on this phenomenon have been conducted in vivo, using invasive procedures, and with contradictory results. Here we used the non-invasive, Manganese-Enhanced Magnet...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2012.08.065

    authors: Bertrand A,Khan U,Hoang DM,Novikov DS,Krishnamurthy P,Rajamohamed Sait HB,Little BW,Sigurdsson EM,Wadghiri YZ

    更新日期:2013-01-01 00:00:00

  • Novel artefact removal algorithms for co-registered EEG/fMRI based on selective averaging and subtraction.

    abstract::Co-registered EEG and functional MRI (EEG/fMRI) is a potential clinical tool for planning invasive EEG in patients with epilepsy. In addition, the analysis of EEG/fMRI data provides a fundamental insight into the precise physiological meaning of both fMRI and EEG data. Routine application of EEG/fMRI for localization ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2012.09.022

    authors: de Munck JC,van Houdt PJ,Gonçalves SI,van Wegen E,Ossenblok PP

    更新日期:2013-01-01 00:00:00

  • Localization of electrophysiological responses to semantic and syntactic anomalies in language comprehension with MEG.

    abstract::Syntactically and semantically anomalous words encountered during sentence comprehension are known to elicit dissociable electrophysiological responses, which are thought to reflect distinct aspects of language processing. However, the sources of these responses have not been well characterized. We used beamforming an...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2014.11.016

    authors: Kielar A,Panamsky L,Links KA,Meltzer JA

    更新日期:2015-01-15 00:00:00

  • Evaluating the replicability, specificity, and generalizability of connectome fingerprints.

    abstract::Establishing reliable, robust, and unique brain signatures from neuroimaging data is a prerequisite for precision psychiatry, and therefore a highly sought-after goal in contemporary neuroscience. Recently, the procedure of connectome fingerprinting, using brain functional connectivity profiles as such signatures, was...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2017.07.016

    authors: Waller L,Walter H,Kruschwitz JD,Reuter L,Müller S,Erk S,Veer IM

    更新日期:2017-09-01 00:00:00

  • 3D Cortical electrophysiology of ballistic upper limb movement in humans.

    abstract::Precise motor control requires the ability to scale the parameters of movement. Theta oscillations across the cortex have been associated with changes in memory, attention, and sensorimotor processing. What has proven more elusive is pinpointing the region-specific frequency band oscillations that are associated with ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2015.04.043

    authors: Ofori E,Coombes SA,Vaillancourt DE

    更新日期:2015-07-15 00:00:00

  • From Pavlov to pain: How predictability affects the anticipation and processing of visceral pain in a fear conditioning paradigm.

    abstract::Conditioned pain-related fear may contribute to hyperalgesia and central sensitization, but this has not been tested for interoceptive, visceral pain. The underlying ability to accurately predict pain is based on predictive cue properties and may alter the sensory processing and cognitive-emotional modulation of pain ...

    journal_title:NeuroImage

    pub_type: 杂志文章,随机对照试验

    doi:10.1016/j.neuroimage.2016.01.064

    authors: Labrenz F,Icenhour A,Schlamann M,Forsting M,Bingel U,Elsenbruch S

    更新日期:2016-04-15 00:00:00

  • BOLD correlates of EMG spectral density in cortical myoclonus: description of method and case report.

    abstract::The recording of electrophysiological data during BOLD fMRI is highly challenging but provides the opportunity to develop a more thorough account of brain function than either modality alone. To develop new techniques in this area has often required the study of pathological electrophysiological measures because such ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2006.04.183

    authors: Richardson MP,Grosse P,Allen PJ,Turner R,Brown P

    更新日期:2006-08-15 00:00:00

  • Involvement of right piriform cortex in olfactory familiarity judgments.

    abstract::Previous studies have shown activation of right orbitofrontal cortex during judgments of odor familiarity. In the present study, we sought to extend our knowledge about the neural circuits involved in such a task by exploring the involvement of the right prefrontal areas and limbic/primary olfactory structures. Fourte...

    journal_title:NeuroImage

    pub_type: 临床试验,杂志文章

    doi:10.1016/j.neuroimage.2004.10.028

    authors: Plailly J,Bensafi M,Pachot-Clouard M,Delon-Martin C,Kareken DA,Rouby C,Segebarth C,Royet JP

    更新日期:2005-02-15 00:00:00

  • Extrastriatal mean regional uptake of fluorine-18-FDOPA in the normal aged brain--an approach using MRI-aided spatial normalization.

    abstract::The aim of this study was to define the mean regional 6-[(18)F]fluoro-l-dopa (FDOPA) uptake rate constant (K(i)) values in the striatal and extrastriatal regions of the brain of normal subjects using magnetic resonance imaging (MRI)-aided spatial normalization of the FDOPA K(i) image and using automatic region of inte...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1006/nimg.2000.0584

    authors: Nagano AS,Ito K,Kato T,Arahata Y,Kachi T,Hatano K,Kawasumi Y,Nakamura A,Yamada T,Abe Y,Ishigaki T

    更新日期:2000-06-01 00:00:00

  • Controlling for the effect of arterial-CO2 fluctuations in resting-state fMRI: Comparing end-tidal CO2 clamping and retroactive CO2 correction.

    abstract::The BOLD signal, as the basis of functional MRI, arises from both neuronal and vascular factors, with their respective contributions to resting state-fMRI still unknown. Among the factors contributing to "physiological noise", dynamic arterial CO2 fluctuations constitutes the strongest and the most widespread modulato...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2020.116874

    authors: Golestani AM,Chen JJ

    更新日期:2020-08-01 00:00:00

  • A cross-validated cytoarchitectonic atlas of the human ventral visual stream.

    abstract::The human ventral visual stream consists of several areas that are considered processing stages essential for perception and recognition. A fundamental microanatomical feature differentiating areas is cytoarchitecture, which refers to the distribution, size, and density of cells across cortical layers. Because cytoarc...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2017.02.040

    authors: Rosenke M,Weiner KS,Barnett MA,Zilles K,Amunts K,Goebel R,Grill-Spector K

    更新日期:2018-04-15 00:00:00

  • Dopamine increases in striatum do not elicit craving in cocaine abusers unless they are coupled with cocaine cues.

    abstract::Imaging studies have shown an association between dopamine increases in striatum and cue induced craving in cocaine abusers. However, the extent to which dopamine increases reflect a primary rather than a secondary response to the cues remains unclear. Here we evaluated the extent to which dopamine increases by themse...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2007.09.059

    authors: Volkow ND,Wang GJ,Telang F,Fowler JS,Logan J,Childress AR,Jayne M,Ma Y,Wong C

    更新日期:2008-02-01 00:00:00

  • Visual gamma oscillations and evoked responses: variability, repeatability and structural MRI correlates.

    abstract::There is increasing interest in the role gamma oscillations ( approximately 40 Hz) play in visual information processing. Despite this interest, and in contrast to the classically studied visual evoked potential, surprisingly little is known about the intra-individual repeatability of induced gamma oscillations. Simil...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2009.11.045

    authors: Muthukumaraswamy SD,Singh KD,Swettenham JB,Jones DK

    更新日期:2010-02-15 00:00:00

  • Effects of transcranial direct current stimulation (tDCS) on human regional cerebral blood flow.

    abstract::Transcranial direct current stimulation (tDCS) can up- and down-regulate cortical excitability depending on current direction, however our abilities to measure brain-tissue effects of the stimulation and its after-effects have been limited so far. We used regional cerebral blood flow (rCBF), a surrogate measure of bra...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2011.06.018

    authors: Zheng X,Alsop DC,Schlaug G

    更新日期:2011-09-01 00:00:00

  • Attention modulates hemispheric differences in functional connectivity: evidence from MEG recordings.

    abstract::The present study examined intrahemispheric functional connectivity during rest and dichotic listening in 8 male and 9 female healthy young adults measured with magnetoencephalography (MEG). Generalized synchronization within the separate hemispheres was estimated by means of the synchronization likelihood that is sen...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2005.09.015

    authors: Gootjes L,Bouma A,Van Strien JW,Scheltens P,Stam CJ

    更新日期:2006-03-01 00:00:00

  • Multi-atlas based segmentation of brain images: atlas selection and its effect on accuracy.

    abstract::Quantitative research in neuroimaging often relies on anatomical segmentation of human brain MR images. Recent multi-atlas based approaches provide highly accurate structural segmentations of the brain by propagating manual delineations from multiple atlases in a database to a query subject and combining them. The atl...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2009.02.018

    authors: Aljabar P,Heckemann RA,Hammers A,Hajnal JV,Rueckert D

    更新日期:2009-07-01 00:00:00

  • Understanding fiber mixture by simulation in 3D Polarized Light Imaging.

    abstract::3D Polarized Light Imaging (3D-PLI) is a neuroimaging technique that has opened up new avenues to study the complex architecture of nerve fibers in postmortem brains. The spatial orientations of the fibers are derived from birefringence measurements of unstained histological brain sections that are interpreted by a vo...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2015.02.020

    authors: Dohmen M,Menzel M,Wiese H,Reckfort J,Hanke F,Pietrzyk U,Zilles K,Amunts K,Axer M

    更新日期:2015-05-01 00:00:00

  • The influence of brain tumor treatment on pathological delta activity in MEG.

    abstract::The goal of the MEG study was to investigate the influence of tumor treatment on pathological delta activity (1-4 Hz). The treatment consisted of neurosurgery, and in some of the patients, additional radiotherapy. MEG and MR recordings were made both before and after the treatment in 17 patients. The signal power in t...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2003.07.030

    authors: de Jongh A,Baayen JC,de Munck JC,Heethaar RM,Vandertop WP,Stam CJ

    更新日期:2003-12-01 00:00:00

  • Diffusion time dependency along the human corpus callosum and exploration of age and sex differences as assessed by oscillating gradient spin-echo diffusion tensor imaging.

    abstract::Conventional diffusion imaging uses pulsed gradient spin echo (PGSE) waveforms with diffusion times of tens of milliseconds (ms) to infer differences of white matter microstructure. The combined use of these long diffusion times with short diffusion times (<10 ​ms) enabled by oscillating gradient spin echo (OGSE) wave...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2020.116533

    authors: Tétreault P,Harkins KD,Baron CA,Stobbe R,Does MD,Beaulieu C

    更新日期:2020-04-15 00:00:00

  • Regional characterization of longitudinal DT-MRI to study white matter maturation of the early developing brain.

    abstract::The human brain undergoes rapid and dynamic development early in life. Assessment of brain growth patterns relevant to neurological disorders and disease requires a normative population model of growth and variability in order to evaluate deviation from typical development. In this paper, we focus on maturation of bra...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2012.11.040

    authors: Sadeghi N,Prastawa M,Fletcher PT,Wolff J,Gilmore JH,Gerig G

    更新日期:2013-03-01 00:00:00

  • Functional activation in diverse regions of the developing brain of human infants.

    abstract::To understand the functional organization of the human cortex during the early postnatal period, we performed neuroimaging studies for visual perception in awake 3-month-old infants. Cortical hemodynamic responses to 2 different video images, moving mobile objects and black-and-white checkerboard pattern reversals, we...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2008.07.014

    authors: Watanabe H,Homae F,Nakano T,Taga G

    更新日期:2008-11-01 00:00:00

  • Enhancing reproducibility of fMRI statistical maps using generalized canonical correlation analysis in NPAIRS framework.

    abstract::Common fMRI data processing techniques usually minimize a temporal cost function or fit a temporal model to extract an activity map. Here, we focus on extracting a highly, spatially reproducible statistical parametric map (SPM) from fMRI data using a cost function that does not depend on a model of the subjects' tempo...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2012.01.137

    authors: Afshin-Pour B,Hossein-Zadeh GA,Strother SC,Soltanian-Zadeh H

    更新日期:2012-05-01 00:00:00

  • Task-dependent activations of human auditory cortex during spatial discrimination and spatial memory tasks.

    abstract::In the present study, we applied high-resolution functional magnetic resonance imaging (fMRI) of the human auditory cortex (AC) and adjacent areas to compare activations during spatial discrimination and spatial n-back memory tasks that were varied parametrically in difficulty. We found that activations in the anterio...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2011.10.069

    authors: Rinne T,Koistinen S,Talja S,Wikman P,Salonen O

    更新日期:2012-02-15 00:00:00

  • "Gating" effects of simultaneous peripheral electrical stimulations on human secondary somatosensory cortex: a whole-head MEG study.

    abstract::The secondary somatosensory cortex (SII) is strongly involved in the processing of somatosensory tactile and nociceptive sensations. We investigated the effect on SII responses of simultaneous painful and nonpainful electrical stimulations delivered to the thumb and little finger. According to the "bimodal" (i.e., noc...

    journal_title:NeuroImage

    pub_type: 临床试验,杂志文章

    doi:10.1016/s1053-8119(03)00439-7

    authors: Torquati K,Pizzella V,Della Penna S,Franciotti R,Babiloni C,Romani GL,Rossini PM

    更新日期:2003-11-01 00:00:00

  • A 4D neonatal head model for diffuse optical imaging of pre-term to term infants.

    abstract::Diffuse optical tomography is most accurate when an individual's MRI data can be used as a spatial prior for image reconstruction and for visualization of the resulting images of changes in oxy- and deoxy-hemoglobin concentration. As this necessitates an MRI scan to be performed for each study, which undermines many o...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2014.06.028

    authors: Brigadoi S,Aljabar P,Kuklisova-Murgasova M,Arridge SR,Cooper RJ

    更新日期:2014-10-15 00:00:00

  • Susceptibility-resistant variable-flip-angle turbo spin echo imaging for reliable estimation of cortical thickness: a feasibility study.

    abstract::The thickness of the human cerebral cortex, which provides valuable information in the studies of normal and abnormal neuroanatomy, is commonly estimated using high-resolution, volumetric magnetization-prepared rapid gradient echo (MP-RAGE) magnetic resonance imaging due to its strong T1-weighted contrast and high sig...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2011.07.070

    authors: Lee H,Kim EY,Yang KS,Park J

    更新日期:2012-01-02 00:00:00

  • An automated pipeline for constructing personalized virtual brains from multimodal neuroimaging data.

    abstract::Large amounts of multimodal neuroimaging data are acquired every year worldwide. In order to extract high-dimensional information for computational neuroscience applications standardized data fusion and efficient reduction into integrative data structures are required. Such self-consistent multimodal data sets can be ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2015.03.055

    authors: Schirner M,Rothmeier S,Jirsa VK,McIntosh AR,Ritter P

    更新日期:2015-08-15 00:00:00

  • Patterns of cortical thickness and surface area in early Parkinson's disease.

    abstract::Idiopathic Parkinson's disease (PD) is a neurodegenerative disorder diagnosed on the basis of motor symptoms, but that also includes cognitive and visuo-spatial deficits. Though PD is known to initially affect subcortical regions, the cortex also exhibits neuronal loss in the course of the disease as post mortem studi...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2010.12.043

    authors: Jubault T,Gagnon JF,Karama S,Ptito A,Lafontaine AL,Evans AC,Monchi O

    更新日期:2011-03-15 00:00:00

  • Large-scale brain functional modularity is reflected in slow electroencephalographic rhythms across the human non-rapid eye movement sleep cycle.

    abstract::Large-scale brain functional networks (measured with functional magnetic resonance imaging, fMRI) are organized into separated but interacting modules, an architecture supporting the integration of distinct dynamical processes. In this work we study how the aforementioned modular architecture changes with the progress...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2012.12.073

    authors: Tagliazucchi E,von Wegner F,Morzelewski A,Brodbeck V,Borisov S,Jahnke K,Laufs H

    更新日期:2013-04-15 00:00:00

  • WITHDRAWN: Neurofeedback-mediated self-regulation of the dopaminergic midbrain.

    abstract::The publisher regrets due to an error in the publishing process the above articles was accidentally withdrawn and has now been published in (Neuroimage 83C December 2013 https://doi.org/10.1016/j.neuroimage.2013.05.115). The publisher would like to apologize for any inconvenience caused. ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2013.02.041

    authors: Sulzer J,Sitaram R,Blefari ML,Kollias S,Birbaumer N,Stephan KE,Luft A,Gassert R

    更新日期:2013-07-15 00:00:00