Coupling estimated effects of QTLs for physiological traits to a crop growth model: predicting yield variation among recombinant inbred lines in barley.

Abstract:

:Advances in the use of molecular markers to elucidate the inheritance of quantitative traits enable the integration of genetic information on physiological traits into crop growth models. The objective of this study was to assess the ability of a crop growth model with QTL-based estimates of physiological input parameters to predict the yield of recombinant inbred lines (RILs) of barley. The model used predicts yield as spike biomass accumulated over the post-flowering period. We describe a two-stage procedure for predicting trait values from estimated additive and epistatic effects of QTLs. Values of physiological traits estimated by that procedure or measured in the field were used as input to the crop growth model. The output values (yield and shoot biomass) from the growth model using these two types of input values were highly correlated, indicating that QTL information can successfully replace measured input parameters. With the current crop growth model, however, both types of input values often resulted in large discrepancies between observed and predicted values. Improvement of performance may be achieved by incorporating physiological processes not yet included in the model. The prospects of using QTL-based predictions of model-input traits to identify new, high yielding barley genotypes are discussed.

journal_name

Heredity (Edinb)

journal_title

Heredity

authors

Yin X,Chasalow SD,Dourleijn CJ,Stam P,Kropff MJ

doi

10.1046/j.1365-2540.2000.00790.x

keywords:

subject

Has Abstract

pub_date

2000-12-01 00:00:00

pages

539-49

issue

Pt 6

eissn

0018-067X

issn

1365-2540

pii

her790

journal_volume

85

pub_type

杂志文章

相关文献

HEREDITY文献大全
  • Genetic effects of rainforest fragmentation in an early successional tree (Elaeocarpus grandis).

    abstract::Rainforests in Australia and around the world have been extensively cleared and degraded. It is essential to recognize the changes in population diversity and dynamics that follow habitat fragmentation if better conservation and management strategies are to be developed. This study is an investigation of the medium te...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/sj.hdy.6800585

    authors: Rossetto M,Jones R,Hunter J

    更新日期:2004-12-01 00:00:00

  • Decoupling of differentiation between traits and their underlying genes in response to divergent selection.

    abstract::We dissected the relationship between genetic differentiation (Q(ST)) for a trait and its underlying genes (G(STq), differentiation for a quantitative locus) in an evolutionary context, with the aim of identifying the conditions in which these two measurements are decoupled. We used two parameters (θ(B) and θ(W)) scal...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2011.81

    authors: Kremer A,Le Corre V

    更新日期:2012-04-01 00:00:00

  • Genetic and environmental components of variation in eumelanin and phaeomelanin sex-traits in the barn owl.

    abstract::Knowledge of the mechanism underlying the expression of melanin-based sex-traits may help us to understand their signalling function. Potential sources of inter-individual variation are the total amount of melanins produced but also how biochemical precursors are allocated into the eumelanin and phaeomelanin pigments ...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/sj.hdy.6800260

    authors: Roulin A,Dijkstra C

    更新日期:2003-05-01 00:00:00

  • The effect of conditioning the medium in DRosophila, in relation to frequency-dependent selection.

    abstract::In the context of frequency-dependent selection, the effect of conditioning the medium, by the previous culture of larvae of a given strain, on the survival of subsequent larvae of the same or different strains was measured. Six strains were sued, some inbred and some lines selected for low or high sternopleural brist...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.1975.102

    authors: Dolan R,Robertson A

    更新日期:1975-12-01 00:00:00

  • Evolution of adaptive diversity and genetic connectivity in Arctic charr (Salvelinus alpinus) in Iceland.

    abstract::The ecological theory of adaptive radiation predicts that the evolution of phenotypic diversity within species is generated by divergent natural selection arising from different environments and competition between species. Genetic connectivity among populations is likely also to have an important role in both the ori...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2010.161

    authors: Kapralova KH,Morrissey MB,Kristjánsson BK,Olafsdóttir GÁ,Snorrason SS,Ferguson MM

    更新日期:2011-03-01 00:00:00

  • Genetic studies on cycloheximide-resistant strains of Schizosaccharomyces pombe.

    abstract::Cycloheximide-resistant mutants of Schizosaccharomyces pombe were isolated either as spontaneous mutants or after mutagenic treatment with nitrous acid, UV and N-methyl-N'-nitro-N-nitrosoguanidine (MNNG). Twenty-three spontaneous mutants and 64 induced mutants were analysed genetically. Crosses revealed that at least ...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.1976.81

    authors: Ibrahim MA,Coddington A

    更新日期:1976-10-01 00:00:00

  • Loss of Wolbachia infection during colonisation in the invasive Argentine ant Linepithema humile.

    abstract::WOLBACHIA are maternally inherited bacteria, which are very common in arthropods and nematodes. Wolbachia infection may affect host reproduction through feminisation, parthenogenesis, male-killing, cytoplasmic incompatibility and increased fecundity. Previous studies showing discrepancies between the phylogenies of Wo...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/sj.hdy.6800601

    authors: Reuter M,Pedersen JS,Keller L

    更新日期:2005-03-01 00:00:00

  • Genetic differentiation and phylogenetic relationships among greek silurus glanis and silurus aristotelis (Pisces, siluridae) populations, assessed by PCR-RFLP analysis of mitochondrial DNA segments

    abstract::Mitochondrial DNA diversity of seven Silurus glanis populations (six from Greece and one from the Danube Delta) and three populations of the endemic Greek Silurus aristotelis was investigated. RFLP analysis of four regions of mitochondrial DNA (cytochrome b, D-loop, ND-5/6) amplified by PCR was used. Ten and nine hapl...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/sj.hdy.6885140

    authors: Triantafyllidis A,Abatzopoulos TJ,Economidis PS

    更新日期:1999-05-01 00:00:00

  • Population genetics with RAPD-PCR markers: the breeding structure of Aedes aegypti in Puerto Rico.

    abstract::RAPD-PCR polymorphisms at 57 presumptive loci were used to examine the breeding structure of the mosquito Aedes aegypti in Puerto Rico. Mosquitoes were sampled from 16 locations in six cities and samples were located in a nested spatial design to examine local patterns of gene flow. Allele frequencies were estimated a...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.1996.50

    authors: Apostol BL,Black WC 4th,Reiter P,Miller BR

    更新日期:1996-04-01 00:00:00

  • Hybridization of banteng (Bos javanicus) and zebu (Bos indicus) revealed by mitochondrial DNA, satellite DNA, AFLP and microsatellites.

    abstract::Hybridization between wild and domestic bovine species occurs worldwide either spontaneously or by organized crossing. We have analysed hybridization of banteng (Bos javanicus) and zebu (Bos indicus) in south-east Asian cattle using mitochondrial DNA (PCR-RFLP and sequencing), AFLP, satellite fragment length polymorph...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/sj.hdy.6800174

    authors: Nijman IJ,Otsen M,Verkaar EL,de Ruijter C,Hanekamp E,Ochieng JW,Shamshad S,Rege JE,Hanotte O,Barwegen MW,Sulawati T,Lenstra JA

    更新日期:2003-01-01 00:00:00

  • Impacts of forest fragmentation on the mating system and genetic diversity of white spruce (Picea glauca) at the landscape level.

    abstract::We studied the mating system of white spruce (Picea glauca) in a landscape fragmented by agriculture in northern Ontario, Canada. We sampled 23 stands that ranged in size from 1 to >500 trees isolated by 250-3000 m from the nearest other stand. Six polymorphic allozyme loci from four enzyme systems were used to genoty...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/sj.hdy.6800886

    authors: O'Connell LM,Mosseler A,Rajora OP

    更新日期:2006-12-01 00:00:00

  • Bias correction for estimated QTL effects using the penalized maximum likelihood method.

    abstract::A penalized maximum likelihood method has been proposed as an important approach to the detection of epistatic quantitative trait loci (QTL). However, this approach is not optimal in two special situations: (1) closely linked QTL with effects in opposite directions and (2) small-effect QTL, because the method produces...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2011.86

    authors: Zhang J,Yue C,Zhang YM

    更新日期:2012-04-01 00:00:00

  • The effects of outbreeding on a parasitoid wasp fixed for infection with a parthenogenesis-inducing Wolbachia symbiont.

    abstract::Trichogramma wasps can be rendered asexual by infection with the maternally inherited symbiont Wolbachia. Previous studies indicate the Wolbachia strains infecting Trichogramma wasps are host-specific, inferred by failed horizontal transfer of Wolbachia to novel Trichogramma hosts. Additionally, Trichogramma can becom...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2017.53

    authors: Lindsey ARI,Stouthamer R

    更新日期:2017-12-01 00:00:00

  • Genetic differentiation in spite of high gene flow in the dominant rainforest tree of southeastern Australia, Nothofagus cunninghamii.

    abstract::Nothofagus cunninghamii is a long-lived, wind-pollinated tree species that dominates the cool temperate rainforests of southeastern Australia. The species' distribution is more or less continuous in western Tasmania but is fragmented elsewhere. However, it is unknown whether this fragmentation has affected the species...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2015.77

    authors: Duncan CJ,Worth JR,Jordan GJ,Jones RC,Vaillancourt RE

    更新日期:2016-01-01 00:00:00

  • Insights into the genetic architecture of morphological traits in two passerine bird species.

    abstract::Knowledge about the underlying genetic architecture of phenotypic traits is needed to understand and predict evolutionary dynamics. The number of causal loci, magnitude of the effects and location in the genome are, however, still largely unknown. Here, we use genome-wide single-nucleotide polymorphism (SNP) data from...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2017.29

    authors: Silva CNS,McFarlane SE,Hagen IJ,Rönnegård L,Billing AM,Kvalnes T,Kemppainen P,Rønning B,Ringsby TH,Sæther BE,Qvarnström A,Ellegren H,Jensen H,Husby A

    更新日期:2017-09-01 00:00:00

  • Paternal transmission of mitochondrial DNA as an integral part of mitochondrial inheritance in metapopulations of Drosophila simulans.

    abstract::Maternal inheritance is one of the hallmarks of animal mitochondrial DNA (mtDNA) and central to its success as a molecular marker. This mode of inheritance and subsequent lack of heterologous recombination allows us to retrace evolutionary relationships unambiguously down the matriline and without the confounding effe...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2012.60

    authors: Wolff JN,Nafisinia M,Sutovsky P,Ballard JW

    更新日期:2013-01-01 00:00:00

  • Allozyme polymorphism at the alpha Gpdh and Adh loci and fitness in Drosophila melanogaster.

    abstract::We have studied in Drosophila melanogaster the effects of allozyme variation at the alpha Gpdh and Adh loci on the following fitness components: female fecundity, egg hatchability, egg-to-adult survival under near-optimal and competitive conditions, rate of development under near-optimal and competitive conditions, an...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.1989.108

    authors: Izquierdo JI,Rubio J

    更新日期:1989-12-01 00:00:00

  • Wolbachia distribution and cytoplasmic incompatibility based on a survey of 42 spider mite species (Acari: Tetranychidae) in Japan.

    abstract::Wolbachia are a group of maternally inherited bacteria that infect a wide range of arthropods. Wolbachia infections are known to result in the expression of various abnormal reproductive phenotypes, the best known being cytoplasmic incompatibility. The first systematic survey of 42 spider mite species in Japan reveale...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/sj.hdy.6800329

    authors: Gotoh T,Noda H,Hong XY

    更新日期:2003-09-01 00:00:00

  • Patterns of pollen and seed dispersal in a small, fragmented population of the wind-pollinated tree Araucaria angustifolia in southern Brazil.

    abstract::Paternity analysis based on eight microsatellite loci was used to investigate pollen and seed dispersal patterns of the dioecious wind-pollinated tree, Araucaria angustifolia. The study sites were a 5.4 ha isolated forest fragment and a small tree group situated 1.7 km away, located in Paranalpha State, Brazil. In the...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/sj.hdy.6801019

    authors: Bittencourt JV,Sebbenn AM

    更新日期:2007-12-01 00:00:00

  • Selection on olfactory response to semiochemicals from a plant-host complex in a parasitic wasp.

    abstract::Parasitic wasps (parasitoids) use volatiles from the plants infested by phytophagous insects to locate host herbivores, but their behavioural response to such semiochemicals is highly variable. Bi-directional selection on Cotesia glomerata (Hymenoptera: Braconidae) was conducted to investigate the importance of geneti...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/sj.hdy.6800340

    authors: Wang Q,Gu H,Dorn S

    更新日期:2003-10-01 00:00:00

  • Absence of dosage compensation at the transcription level of a sex-linked gene in a female heterogametic insect, Bombyx mori.

    abstract::To confirm whether sex-linked genes of the silkworm are dosage compensated or not, we investigated three RAPDs and one RFLP marker which have been mapped to the Z chromosome as candidate genes to test for dosage compensation. Northern blot analysis demonstrated that one of the RAPDs, T15.180a, is transcribed into seve...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1046/j.1365-2540.1998.00356.x

    authors: Suzuki MG,Shimada T,Kobayashi M

    更新日期:1998-09-01 00:00:00

  • Sex-linkage of two enzyme loci in Oncorhyncus mykiss (rainbow trout)

    abstract::We report the first sex-linked loci in Oncorhynchus mykiss (rainbow trout). Previous cytological and breeding experiments have demonstrated an XX/XY sex determining system in this and other salmonid species. Joint segregation data from fathers indicated an average of 8.1 per cent recombination between HEX-2 and the se...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.1994.67

    authors: Allendorf FW,Gellman WA,Thorgaard GH

    更新日期:1994-05-01 00:00:00

  • The threshold model as a general purpose normalizing transformation.

    abstract::The estimation of heritabilities and genetic correlations is based on the assumption that the trait distributions are normal. When the distributions are not normal it is advisable to transform the data to produce normality. However, it is possible that no suitable transformation can be found. The purpose of the presen...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1046/j.1365-2540.2001.00844.x

    authors: Roff DA

    更新日期:2001-04-01 00:00:00

  • Evolution of apomixis loci in Pilosella and Hieracium (Asteraceae) inferred from the conservation of apomixis-linked markers in natural and experimental populations.

    abstract::The Hieracium and Pilosella (Lactuceae, Asteraceae) genera of closely related hawkweeds contain species with two different modes of gametophytic apomixis (asexual seed formation). Both genera contain polyploid species, and in wild populations, sexual and apomictic species co-exist. Apomixis is known to co-exist with s...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2014.61

    authors: Hand ML,Vít P,Krahulcová A,Johnson SD,Oelkers K,Siddons H,Chrtek J Jr,Fehrer J,Koltunow AM

    更新日期:2015-01-01 00:00:00

  • Making a long story short: noncoding RNAs and chromosome change.

    abstract::As important as the events that influence selection for specific chromosome types in the derivation of novel karyotypes, are the events that initiate the changes in chromosome number and structure between species, and likewise polymorphisms, variants and disease states within species. Although once thought of as trans...

    journal_title:Heredity

    pub_type: 杂志文章,评审

    doi:10.1038/hdy.2011.104

    authors: Brown JD,Mitchell SE,O'Neill RJ

    更新日期:2012-01-01 00:00:00

  • Making sense of the relationships between Ne, Nb and Nc towards defining conservation thresholds in Atlantic salmon (Salmo salar).

    abstract::Effective population size over a generation (Ne) or over a reproductive cycle (Nb) and the adult census size (Nc) are important parameters in both conservation and evolutionary biology. Ne provides information regarding the rate of loss of genetic diversity and can be tracked back in time to infer demographic history ...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2016.62

    authors: Ferchaud AL,Perrier C,April J,Hernandez C,Dionne M,Bernatchez L

    更新日期:2016-10-01 00:00:00

  • Linkage map of the peppered moth, Biston betularia (Lepidoptera, Geometridae): a model of industrial melanism.

    abstract::We have constructed a linkage map for the peppered moth (Biston betularia), the classical ecological genetics model of industrial melanism, aimed both at localizing the network of loci controlling melanism and making inferences about chromosome dynamics. The linkage map, which is based primarily on amplified fragment ...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/hdy.2012.84

    authors: Van't Hof AE,Nguyen P,Dalíková M,Edmonds N,Marec F,Saccheri IJ

    更新日期:2013-03-01 00:00:00

  • A novel mating system analysis for modes of self-oriented mating applied to diploid and polyploid arctic Easter daisies (Townsendia hookeri).

    abstract::We have developed a new model for mating system analysis, which attempts to distinguish among alternative modes of self-oriented mating within populations. This model jointly estimates the rates of outcrossing, selfing, automixis and apomixis, through the use of information in the family structure given by dominant ge...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/sj.hdy.6800844

    authors: Thompson SL,Ritland K

    更新日期:2006-08-01 00:00:00

  • Effects of demographic stochasticity and life-history strategies on times and probabilities to fixation.

    abstract::How life-history strategies influence the evolution of populations is not well understood. Most existing models stem from the Wright-Fisher model which considers discrete generations and a fixed population size, thus not taking into account any potential consequences of overlapping generations and demographic stochast...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/s41437-018-0118-6

    authors: Abu Awad D,Coron C

    更新日期:2018-10-01 00:00:00

  • Neutral locus heterozygosity, inbreeding, and survival in Darwin's ground finches (Geospiza fortis and G. scandens).

    abstract::Comprehensive long-term studies of isolated populations provide valuable comparative data that may be used to evaluate different methods for quantifying the relationship between genetic diversity and fitness. Here, we report on data collected from large and well-characterized cohorts of the two numerically dominant sp...

    journal_title:Heredity

    pub_type: 杂志文章

    doi:10.1038/sj.hdy.6800409

    authors: Markert JA,Grant PR,Grant BR,Keller LF,Coombs JL,Petren K

    更新日期:2004-04-01 00:00:00