A competition model for viral inhibition of host cell proliferation.

Abstract:

:Some viruses encode proteins that promote cell proliferation while others, such as the human immunodeficiency virus (HIV), encode proteins that prevent cell division. It has been hypothesized that the selective advantage determining which strategy evolves depends on the ability of the virus to induce a cellular environment which maximizes both virus production and cell life span. In HIV, the protein that causes cell cycle arrest is Vpr. In this paper, we develop a mathematical model, based on difference equations, to study the competition between two genotypes of HIV - one that encodes this protein (Vpr+) and one that does not (Vpr-). In particular, we are interested in parameters that could be different between the in vitro condition, where the Vpr- genotype dominates, and the in vivo condition, where the Vpr+ genotype dominates. Our model indicates that the infected cell death-rate, the viral half-life, and the dynamics of the target cell population all effect the competition dynamics between the Vpr+ and Vpr- viral genotypes. Perturbing any of these parameters from the in vitro estimates while holding the others fixed has no affect on the competition outcome, i. e., the Vpr- genotype dominates. Perturbing the infected cell death-rate and the target cell source causes a switch in competitive outcome, although not necessarily at values, which represent the in vivo condition. Adding a perturbation in the viral half-life from in vitro to in vivo condition results in a switch of the competitive advantage from the Vpr- genotype to the Vpr+ genotype with parameters for all three mechanisms set to estimated in vivo values.

journal_name

Math Biosci

journal_title

Mathematical biosciences

authors

Holtea S,Emerman M

doi

10.1016/s0025-5564(00)00020-1

subject

Has Abstract

pub_date

2000-07-01 00:00:00

pages

69-84

issue

1

eissn

0025-5564

issn

1879-3134

pii

S0025556400000201

journal_volume

166

pub_type

杂志文章
  • An age-structured model for pertussis transmission.

    abstract::The vaccination program for pertussis (whooping cough) in the United States consists of giving multiple doses of pertussis vaccine to young children. A demographic model with a steady-state age distribution is used as a basis for building an epidemiologic model for the transmission of pertussis. This age-structured mo...

    journal_title:Mathematical biosciences

    pub_type: 历史文章,杂志文章

    doi:10.1016/s0025-5564(97)00014-x

    authors: Hethcote HW

    更新日期:1997-10-15 00:00:00

  • Closed-loop stability of pharmacokinetic-pharmacodynamic models.

    abstract::In automatic feedback control of intravenous drug infusions, convergence to the setpoint is an important objective. This paper examines the stability of pharmacokinetic-pharmacodynamic models of patient response regulated with proportional integral feedback. The model consists of three components: linear compartmental...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/s0025-5564(97)00076-x

    authors: Wada DR

    更新日期:1997-12-01 00:00:00

  • An agent-based modeling framework linking inflammation and cancer using evolutionary principles: description of a generative hierarchy for the hallmarks of cancer and developing a bridge between mechanism and epidemiological data.

    abstract::Inflammation plays a critical role in the development and progression of cancer, evident in multiple patient populations manifesting increased, non-resolving inflammation, such as inflammatory bowel disease, viral hepatitis and obesity. Given the complexity of both the inflammatory response and the process of oncogene...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2014.07.009

    authors: An G,Kulkarni S

    更新日期:2015-02-01 00:00:00

  • The effect of community structure on the immunity coverage required to prevent epidemics.

    abstract::Estimation of the immunity coverage required to effectively control disease transmission is an important public health problem. Using data on the eventual size of a major epidemic, we compare estimates based on the simplifying assumption that the community consists of uniformly mixing individuals with estimates obtain...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/s0025-5564(97)00079-5

    authors: Becker NG,Utev S

    更新日期:1998-01-01 00:00:00

  • A computer exploration of some properties of non-linear stochastic partnership models for sexually transmitted diseases with stages.

    abstract::In this paper, branching process approximations to non-linear stochastic partnership models for sexually transmitted diseases in heterosexual populations were used to find points in the parameter space such that an epidemic would occur. At selected points in the parameter space, samples of Monte Carlo realizations of ...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/s0025-5564(98)10063-9

    authors: Sleeman CK,Mode CJ

    更新日期:1999-03-01 00:00:00

  • A new approach to reconstruction models of dendritic branching patterns.

    abstract::Quantitative models for characterising the detailed branching patterns of dendritic trees aim to explain these patterns either in terms of growth models based on principles of dendritic development or reconstruction models that describe an existing structure by means of a canonical set of elementary properties of dend...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2006.08.005

    authors: Lindsay KA,Maxwell DJ,Rosenberg JR,Tucker G

    更新日期:2007-02-01 00:00:00

  • Yule-generated trees constrained by node imbalance.

    abstract::The Yule process generates a class of binary trees which is fundamental to population genetic models and other applications in evolutionary biology. In this paper, we introduce a family of sub-classes of ranked trees, called Ω-trees, which are characterized by imbalance of internal nodes. The degree of imbalance is de...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2013.08.008

    authors: Disanto F,Schlizio A,Wiehe T

    更新日期:2013-11-01 00:00:00

  • Patient-specific modeling of the neuroendocrine HPA-axis and its relation to depression: Ultradian and circadian oscillations.

    abstract::In the Western world approximately 10% of the population experience severe depression at least once in their lifetime and many more experience a mild form of depression. Depression has been associated with malfunctions in the hypothalamus-pituitary-adrenal (HPA) axis. We suggest a novel mechanistic non-linear model ca...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2014.07.013

    authors: Gudmand-Hoeyer J,Timmermann S,Ottesen JT

    更新日期:2014-11-01 00:00:00

  • The influence of concurrent partnerships on the dynamics of HIV/AIDS.

    abstract::Most models of the spread of HIV/AIDS assume that the probability of transmission from an infected individual to a susceptible partner has some constant value per sexual act, compounding independently randomly (so that ten acts with one person chosen from a particular group has, on average, the same risk as one act wi...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/0025-5564(92)90006-i

    authors: Watts CH,May RM

    更新日期:1992-02-01 00:00:00

  • An analytical solution for percutaneous drug absorption: application and removal of the vehicle.

    abstract::The methods of Laplace transform were used to solve a mathematical model developed for percutaneous drug absorption. This model includes application and removal of the vehicle from the skin. A system of two linear partial differential equations was solved for the application period. The concentration of the medicinal ...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2005.07.002

    authors: Simon L,Loney NW

    更新日期:2005-10-01 00:00:00

  • On the robustness of regular systems of inbreeding.

    abstract::Half-sib, first cousin, half nth cousin, and nth cousin mating systems are robust in that small deviations from the mating structure will not significantly alter the levels of genetic identity or effect qualitative distinctions between the models. Substitution of nearest kin in matings may either increase or decrease ...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/0025-5564(91)90026-f

    authors: Campbell RB

    更新日期:1991-04-01 00:00:00

  • A universal model of single-unit sensory receptor action.

    abstract::We present a model governing the operation of all "isolated" sensory receptors with their primary afferent neurons. The input to the system is the intensity of a sensory signal, be it chemical, optical etc., and the output is the rate of neural impulse transmission in the afferent neuron. The model is based on the pre...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/0025-5564(94)00024-t

    authors: Norwich KH,Wong W

    更新日期:1995-01-01 00:00:00

  • A density-dependent model of competition for one resource in the chemostat.

    abstract::This paper deals with a two-microbial species model in competition for a single-resource in the chemostat including general intra- and interspecific density-dependent growth rates with distinct removal rates for each species. In order to understand the effects of intra- and interspecific interference, this general mod...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2017.02.007

    authors: Fekih-Salem R,Lobry C,Sari T

    更新日期:2017-04-01 00:00:00

  • Influence of concurrency, partner choice, and viral suppression on racial disparity in the prevalence of HIV infected women.

    abstract::In 1992, Watts and May introduced a simple dynamical systems model of the spread of HIV based on disease transmission per partnership including the length of partnership duration. This model allowed for the treatment of concurrent partnerships, although it was hampered by the assumption of an important latent phase wh...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2016.09.009

    authors: Gurski KF,Hoffman KA

    更新日期:2016-12-01 00:00:00

  • Random and non-random mating populations: Evolutionary dynamics in meiotic drive.

    abstract::Game theoretic tools are utilized to analyze a one-locus continuous selection model of sex-specific meiotic drive by considering nonequivalence of the viabilities of reciprocal heterozygotes that might be noticed at an imprinted locus. The model draws attention to the role of viability selections of different types to...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2015.10.013

    authors: Sarkar B

    更新日期:2016-01-01 00:00:00

  • What can trigger the onset of Parkinson's disease - A modeling study based on a compartmental model of α-synuclein transport and aggregation in neurons.

    abstract::The aim of this paper is to develop a minimal model describing events leading to the onset of Parkinson's disease (PD). The model accounts for α-synuclein (α-syn) production in the soma, transport toward the synapse, misfolding, and aggregation. The production and aggregation of polymeric α-syn is simulated using a mi...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2016.05.002

    authors: Kuznetsov IA,Kuznetsov AV

    更新日期:2016-08-01 00:00:00

  • A mechanoreceptor model for rapidly and slowly adapting afferents subjected to periodic vibratory stimuli.

    abstract::A simple model of Freeman and Johnson on cutaneous mechanoreceptors is modified by introducing mechanisms for hyperexcitation and refractoriness. These lead to significant improvements in the match between the neural and model data. ...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/0025-5564(94)00083-c

    authors: Slavík P,Bell J

    更新日期:1995-11-01 00:00:00

  • On global and local critical points of extended contact process on homogeneous trees.

    abstract::We study spatial stochastic epidemic models called households models. The households models have more than two states at each vertex of a graph in contrast to the contact process. We show that, in the households models on trees, two thresholds of infection rates characterize epidemics. The global critical infection ra...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2008.02.004

    authors: Sugimine N,Masuda N,Konno N,Aihara K

    更新日期:2008-05-01 00:00:00

  • Mathematics of protein pathological misfolding.

    abstract::"Protein folding is defined as a process by which a polypeptide chain performs a search in conformational space with the objective of achieving the so-called native conformation to global free-energy minimum under a given set of physiochemical conditions of the medium." Misfolding then, is the process by which this ob...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章,评审

    doi:10.1016/j.mbs.2006.08.008

    authors: Armah EO

    更新日期:2007-07-01 00:00:00

  • Dynamical entropy via entropy of non-random matrices: application to stability and complexity in modelling ecosystems.

    abstract::In the present paper we have first introduced a measure of dynamical entropy of an ecosystem on the basis of the dynamical model of the system. The dynamical entropy which depends on the eigenvalues of the community matrix of the system leads to a consistent measure of complexity of the ecosystem to characterize the d...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2013.07.016

    authors: Chakrabarti CG,Ghosh K

    更新日期:2013-10-01 00:00:00

  • Exploration of sexual dimorphism and inter-individual variability in multivariate parameter spaces for a pharmacokinetic compartment model.

    abstract::Pharmacokinetic models are particularly useful to study the underlying and complex physiological mechanisms contributing to clinical differences across patient subgroups or special populations. Unfortunately, the inherent variability of biological systems and knowledge gaps in physiological data limit confidence in mo...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2018.12.011

    authors: Scherholz ML,Androulakis IP

    更新日期:2019-02-01 00:00:00

  • Some remarks on definition and validity of terms used in models for infectious disease spread.

    abstract::The epidemiology of infectious diseases makes use of a number of terms, such as exposure, infected, carrier, attack rate, and immunity. Researchers who intend to model the spread of epidemics should be aware of the problems with some of these terms. The role played by inapparent, or subclinical, infections is receivin...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/0025-5564(91)90001-y

    authors: Giesecke J

    更新日期:1991-12-01 00:00:00

  • An integrated modeling-experimental strategy for the analysis of metabolic pathways.

    abstract::An inherent problem in studying the behavior of a metabolic pathway is the impossibility of developing a complete, detailed model that includes all the cellular processes that have an impact on the set of fluxes in such a pathway. Lacking this, one requires some means of modeling the interactions between a metabolic p...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/0025-5564(90)90049-5

    authors: Schlosser PM,Bailey JE

    更新日期:1990-06-01 00:00:00

  • Determination of threshold conditions for a non-linear stochastic partnership model for heterosexually transmitted diseases with stages.

    abstract::When comparing the performance of a stochastic model of an epidemic at two points in a parameter space, a threshold is said to have been crossed when at one point an epidemic develops with positive probability; while at the other there is a tendency for an epidemic to become extinct. The approach used to find threshol...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/s0025-5564(01)00093-1

    authors: Gallop RJ,Mode CJ,Sleeman CK

    更新日期:2002-05-01 00:00:00

  • Visibility in a pure model of golden spiral phyllotaxis.

    abstract::This paper considers the geometry of plants with golden spiral phyllotaxis, i.e. growing leaf by leaf on a spiral with golden divergence angle, via the simplest mathematical model, a cylinder with regular arrangement of points on its surface. As is well-known, Fibonacci numbers appear by means of the order of parastic...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2018.05.003

    authors: Herrmann B

    更新日期:2018-07-01 00:00:00

  • Spatial synchrony in host-parasitoid models using aggregation of variables.

    abstract::We consider a host-parasitoid system with individuals moving on a square grid of patches. We study the effects of increasing movement frequency of hosts and parasitoids on the spatial dynamics of the system. We show that there exists a threshold value of movement frequency above which spatial synchrony occurs and the ...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2006.03.019

    authors: Nguyen-Huu T,Lett C,Auger P,Poggiale JC

    更新日期:2006-10-01 00:00:00

  • Intraspecific trait variation and its effects on food chains.

    abstract::Traits such as skill at foraging and investment in anti-predator defense may vary among individuals within a species population. This intraspecific variation has implications for community dynamics. The implications of intraspecific variation of a consumer in the intermediate level of a tritrophic food chain are explo...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2013.04.008

    authors: DeAngelis DL

    更新日期:2013-08-01 00:00:00

  • A geometrical model for diffusion of hydrophilic compounds in human stratum corneum.

    abstract::A three-dimensional diffusion model with either hexagonal or cylindrical symmetry has been constructed to simulate desorption profiles of hydrophilic chemicals from the topmost layer of human skin (the stratum corneum) as measured in ex vivo studies. The tissue is pierced by skin appendages - sweat glands and hair fol...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2018.03.010

    authors: Yu F,Kasting GB

    更新日期:2018-06-01 00:00:00

  • Termite population size estimation based on termite tunnel patterns using a convolutional neural network.

    abstract::Subterranean termites live in large colonies under the ground where they build an elaborate network of tunnels for foraging. In this study, we explored how the termite population size can be estimated using partial information on tunnel patterns. To achieve this, we used an agent-based model to create tunnel patterns ...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2019.108218

    authors: Seo JK,Baik S,Lee SH

    更新日期:2019-09-01 00:00:00

  • Mathematical modeling of perifusion cell culture experiments on GnRH signaling.

    abstract::The effects of pulsatile GnRH stimulation on anterior pituitary cells are studied using perifusion cell cultures, where constantly moving culture medium over the immobilized cells allows intermittent GnRH delivery. The LH content of the outgoing medium serves as a readout of the GnRH signaling pathway activation in th...

    journal_title:Mathematical biosciences

    pub_type: 杂志文章

    doi:10.1016/j.mbs.2016.03.016

    authors: Temamogullari NE,Nijhout HF,C Reed M

    更新日期:2016-06-01 00:00:00