A 3D-QSAR Analysis of CDK2 Inhibitors Using FMO Calculations and PLS Regression.

Abstract:

:We report a three-dimensional quantitative structure-activity relationship (3D-QSAR) analysis of CDK2 inhibitors using fragment molecular orbital (FMO) calculations and partial least squares (PLS) regression. In our analysis, fragment binding energies of individual amino acids and fragment binding energy of a single ligand in a protein-ligand complex are evaluated by FMO calculations and used as descriptors in PLS regression to estimate biological activities of the ligands. The analysis was applied to the system of CDK2 protein and its inhibitors and the effectiveness of the method was tested. Application of the 3D-QSAR model demonstrated that it offered good predictive ability and was able to predict not only biological activity of ligands but also identify important amino acid residues which could be targeted in order to improve ligand activity.

authors

Yoshida T,Hirono S

doi

10.1248/cpb.c18-00990

subject

Has Abstract

pub_date

2019-01-01 00:00:00

pages

546-555

issue

6

eissn

0009-2363

issn

1347-5223

journal_volume

67

pub_type

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