Grapevine leafroll-associated virus 3.

Abstract:

:Grapevine leafroll disease (GLD) is one of the most important grapevine viral diseases affecting grapevines worldwide. The impact on vine health, crop yield, and quality is difficult to assess due to a high number of variables, but significant economic losses are consistently reported over the lifespan of a vineyard if intervention strategies are not implemented. Several viruses from the family Closteroviridae are associated with GLD. However, Grapevine leafroll-associated virus 3 (GLRaV-3), the type species for the genus Ampelovirus, is regarded as the most important causative agent. Here we provide a general overview on various aspects of GLRaV-3, with an emphasis on the latest advances in the characterization of the genome. The full genome of several isolates have recently been sequenced and annotated, revealing the existence of several genetic variants. The classification of these variants, based on their genome sequence, will be discussed and a guideline is presented to facilitate future comparative studies. The characterization of sgRNAs produced during the infection cycle of GLRaV-3 has given some insight into the replication strategy and the putative functionality of the ORFs. The latest nucleotide sequence based molecular diagnostic techniques were shown to be more sensitive than conventional serological assays and although ELISA is not as sensitive it remains valuable for high-throughput screening and complementary to molecular diagnostics. The application of next-generation sequencing is proving to be a valuable tool to study the complexity of viral infection as well as plant pathogen interaction. Next-generation sequencing data can provide information regarding disease complexes, variants of viral species, and abundance of particular viruses. This information can be used to develop more accurate diagnostic assays. Reliable virus screening in support of robust grapevine certification programs remains the cornerstone of GLD management.

journal_name

Front Microbiol

authors

Maree HJ,Almeida RP,Bester R,Chooi KM,Cohen D,Dolja VV,Fuchs MF,Golino DA,Jooste AE,Martelli GP,Naidu RA,Rowhani A,Saldarelli P,Burger JT

doi

10.3389/fmicb.2013.00082

subject

Has Abstract

pub_date

2013-04-16 00:00:00

pages

82

issn

1664-302X

journal_volume

4

pub_type

杂志文章
  • Sex Modulates Lactobacillus johnsonii N6.2 and Phytophenol Effectiveness in Reducing High Fat Diet Induced mTOR Activation in Sprague-Dawley Rats.

    abstract::Metabolic syndrome (MetS) is the underlying cause of some devastating diseases, including type 2 diabetes and cardiovascular disease. These diseases have been associated with over-activation of the mechanistic Target of Rapamycin (mTOR) pathway. This study utilizes a high fat diet (HFD) to induce MetS and to dissect t...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2018.02649

    authors: Kling DN,DeBose-Scarlett EM,Teixeira LD,Gezan SA,Lorca GL,Gonzalez CF

    更新日期:2018-11-06 00:00:00

  • Combinational Inhibitory Action of Hedychium spicatum L. Essential Oil and γ-Radiation on Growth Rate and Mycotoxins Content of Fusarium graminearum in Maize: Response Surface Methodology.

    abstract::Nowadays, contamination of agricultural commodities with fungi and their mycotoxins is one of the most annoying with regard to food safety and pose serious health risk. Therefore, there is a requisite to propose suitable mitigation strategies to reduce the contamination of fungi and mycotoxins in agricultural commodit...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2018.01511

    authors: Kalagatur NK,Kamasani JR,Siddaiah C,Gupta VK,Krishna K,Mudili V

    更新日期:2018-07-31 00:00:00

  • Increased Toxoplasma gondii Intracellular Proliferation in Human Extravillous Trophoblast Cells (HTR8/SVneo Line) Is Sequentially Triggered by MIF, ERK1/2, and COX-2.

    abstract::Macrophage migration inhibitory factor (MIF) is a potent pro-inflammatory cytokine, which mediates the regulation of diverse cellular functions. It is produced by extravillous trophoblastic cells and has been found to be involved in the pathogenesis of diseases caused by some protozoa, including Toxoplasma gondii. Pre...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2019.00852

    authors: Milian ICB,Silva RJ,Manzan-Martins C,Barbosa BF,Guirelli PM,Ribeiro M,de Oliveira Gomes A,Ietta F,Mineo JR,Silva Franco P,Ferro EAV

    更新日期:2019-04-24 00:00:00

  • Occurence of ArmA and RmtB Aminoglycoside Resistance 16S rRNA Methylases in Extended-Spectrum β-Lactamases Producing Escherichia coli in Algerian Hospitals.

    abstract::The aim of this study, was to characterize the extended-spectrum-β-lactamases (ESBLs) producing clinical strains of Escherichia coli isolated between January 2009 and June 2012 from Algerian hospitals and to determine the prevalence of 16S rRNA methylase among them. Sixty-seven ESBL-producers were detected among the 2...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2016.01409

    authors: Ayad A,Drissi M,de Curraize C,Dupont C,Hartmann A,Solanas S,Siebor E,Amoureux L,Neuwirth C

    更新日期:2016-09-12 00:00:00

  • The Developmental Stage Symbionts of the Pea Aphid-Feeding Chrysoperla sinica (Tjeder).

    abstract::Chrysoperla sinica (Tjeder) is widely recognized as an important holometabolous natural enemy of various insect pests in different cropping systems and as a non-target surrogate in environmental risk assessment of Bt rice (i.e., genetically modified rice to express a toxin gene from Bacillus thuringiensis). Like other...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2019.02454

    authors: Zhao C,Zhao H,Zhang S,Luo J,Zhu X,Wang L,Zhao P,Hua H,Cui J

    更新日期:2019-11-01 00:00:00

  • Antimicrobial active herbal compounds against Acinetobacter baumannii and other pathogens.

    abstract::Bacterial pathogens cause a number of lethal diseases. Opportunistic bacterial pathogens grouped into ESKAPE pathogens that are linked to the high degree of morbidity, mortality and increased costs as described by Infectious Disease Society of America. Acinetobacter baumannii is one of the ESKAPE pathogens which cause...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章,评审

    doi:10.3389/fmicb.2015.00618

    authors: Tiwari V,Roy R,Tiwari M

    更新日期:2015-06-18 00:00:00

  • Drug Resistance Mechanisms in Bacteria Causing Sexually Transmitted Diseases and Associated with Vaginosis.

    abstract::Here, we review sexually transmitted diseases (STDs) caused by pathogenic bacteria and vaginal infections which result from an overgrowth of opportunistic bacterial microflora. First, we describe the STDs, the corresponding pathogens and the antimicrobials used for their treatment. In addition to the well-known diseas...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章,评审

    doi:10.3389/fmicb.2016.00747

    authors: Shaskolskiy B,Dementieva E,Leinsoo A,Runina A,Vorobyev D,Plakhova X,Kubanov A,Deryabin D,Gryadunov D

    更新日期:2016-05-18 00:00:00

  • The role of adjuvants in therapeutic protection against paracoccidioidomycosis after immunization with the P10 peptide.

    abstract::Paracoccidioidomycosis (PCM), a common chronic mycosis in Latin America, is a granulomatous systemic disease caused by the thermo-dimorphic fungus Paracoccidioides brasiliensis. The glycoprotein gp43 is the main antigen target of P. brasiliensis and a 15-mer internal peptide (QTLIAIHTLAIRYAN), known as P10, defines a ...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2012.00154

    authors: Mayorga O,Muñoz JE,Lincopan N,Teixeira AF,Ferreira LC,Travassos LR,Taborda CP

    更新日期:2012-05-04 00:00:00

  • PBHMDA: Path-Based Human Microbe-Disease Association Prediction.

    abstract::With the advance of sequencing technology and microbiology, the microorganisms have been found to be closely related to various important human diseases. The increasing identification of human microbe-disease associations offers important insights into the underlying disease mechanism understanding from the perspectiv...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2017.00233

    authors: Huang ZA,Chen X,Zhu Z,Liu H,Yan GY,You ZH,Wen Z

    更新日期:2017-02-22 00:00:00

  • Diversity of D-Amino Acid Utilizing Bacteria From Kongsfjorden, Arctic and the Metabolic Pathways for Seven D-Amino Acids.

    abstract::D-amino acids (DAAs) are an important component of the refractory dissolved organic matter pool in the ocean. Microbes play a vital role in promoting the recycling of DAAs in the ocean. However, the diversity of marine DAA-utilizing bacteria and how they metabolize DAAs are seldom studied. Here, by enrichment culture ...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2019.02983

    authors: Yu Y,Yang J,Zheng LY,Sheng Q,Li CY,Wang M,Zhang XY,McMinn A,Zhang YZ,Song XY,Chen XL

    更新日期:2020-01-10 00:00:00

  • Further Spread of a blaKPC-Harboring Untypeable Plasmid in Enterobacteriaceae in China.

    abstract::The wide spread of Klebsiella pneumoniae carbapenemase (KPC)-producing Enterobacteriaceae is great threat to public health in China. Plasmids are among the major factors mediating blaKPC gene dissemination. A total of 156 carbapenem-resistant Enterobacteriaceae (CRE) isolates were identified in a tertiary hospital in ...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2018.01938

    authors: Huang J,Ding H,Shi Y,Zhao Y,Hu X,Ren J,Huang G,Wu R,Zhao Z

    更新日期:2018-08-21 00:00:00

  • Gene polymorphisms in pattern recognition receptors and susceptibility to idiopathic recurrent vulvovaginal candidiasis.

    abstract:OBJECTIVE:Approximately 5% of women suffer from recurrent vulvovaginal candidiasis (RVVC). It has been hypothesized that genetic factors play an important role in the susceptibility to RVVC. The aim of this study was to assess the effect of genetic variants of genes encoding for pattern recognition receptors (PRRs) on ...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2014.00483

    authors: Rosentul DC,Delsing CE,Jaeger M,Plantinga TS,Oosting M,Costantini I,Venselaar H,Joosten LA,van der Meer JW,Dupont B,Kullberg BJ,Sobel JD,Netea MG

    更新日期:2014-09-23 00:00:00

  • Cell tropism and pathogenesis of measles virus in monkeys.

    abstract::Measles virus (MV) is an enveloped negative strand RNA virus belonging to the family of Paramyxoviridae, genus Morbillivirus, and causes one of the most contagious diseases in humans. Experimentally infected non-human primates are used as animal models for studies of the pathogenesis of human measles. We established a...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2012.00014

    authors: Kato SI,Nagata K,Takeuchi K

    更新日期:2012-01-30 00:00:00

  • Parasites in algae mass culture.

    abstract::Parasites are now known to be ubiquitous across biological systems and can play an important role in modulating algal populations. However, there is a lack of extensive information on their role in artificial ecosystems such as algal production ponds and photobioreactors. Parasites have been implicated in the demise o...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章,评审

    doi:10.3389/fmicb.2014.00278

    authors: Carney LT,Lane TW

    更新日期:2014-06-06 00:00:00

  • Experimental Evolution on a Wild Mammal Species Results in Modifications of Gut Microbial Communities.

    abstract::Comparative studies have shown that diet, life history, and phylogeny interact to determine microbial community structure across mammalian hosts. However, these studies are often confounded by numerous factors. Selection experiments offer unique opportunities to validate conclusions and test hypotheses generated by co...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2016.00634

    authors: Kohl KD,Sadowska ET,Rudolf AM,Dearing MD,Koteja P

    更新日期:2016-05-04 00:00:00

  • Biofilm Microbiome (Re)Growth Dynamics in Drinking Water Distribution Systems Are Impacted by Chlorine Concentration.

    abstract::Biofilms are the dominant form of microbial loading (and organic material) within drinking water distribution systems (DWDS), yet our understanding of DWDS microbiomes is focused on the more easily accessible bulk-water. Disinfectant residuals are commonly provided to manage planktonic microbial activity in DWDS to sa...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2018.02519

    authors: Fish KE,Boxall JB

    更新日期:2018-10-23 00:00:00

  • Actin and DNA Protect Histones from Degradation by Bacterial Proteases but Inhibit Their Antimicrobial Activity.

    abstract::Histones are small polycationic proteins located in the cell nucleus. Together, DNA and histones are integral constituents of the nucleosomes. Upon apoptosis, necrosis, and infection - induced cell death, histones are released from the cell. The extracellular histones have strong antimicrobial activity but are also cy...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2016.01248

    authors: Sol A,Skvirsky Y,Blotnick E,Bachrach G,Muhlrad A

    更新日期:2016-08-09 00:00:00

  • Novel Extracellular Electron Transfer Channels in a Gram-Positive Thermophilic Bacterium.

    abstract::Biogenic transformation of Fe minerals, associated with extracellular electron transfer (EET), allows microorganisms to exploit high-potential refractory electron acceptors for energy generation. EET-capable thermophiles are dominated by hyperthermophilic archaea and Gram-positive bacteria. Information on their EET pa...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2020.597818

    authors: Gavrilov SN,Zavarzina DG,Elizarov IM,Tikhonova TV,Dergousova NI,Popov VO,Lloyd JR,Knight D,El-Naggar MY,Pirbadian S,Leung KM,Robb FT,Zakhartsev MV,Bretschger O,Bonch-Osmolovskaya EA

    更新日期:2021-01-11 00:00:00

  • Probiotic Supplements: Hope or Hype?

    abstract::Probiotic bacteria have been associated with various health benefits and included in overwhelming number of foods. Today, probiotic supplements are consumed with increasing regularity and record a rapidly growing economic value. With billions of heterogeneous populations of probiotics per serving, probiotic supplement...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2020.00160

    authors: Wang Y,Jiang Y,Deng Y,Yi C,Wang Y,Ding M,Liu J,Jin X,Shen L,He Y,Wu X,Chen X,Sun C,Zheng M,Zhang R,Ye H,An H,Wong A

    更新日期:2020-02-28 00:00:00

  • A New Pathway for Mannitol Metabolism in Yeasts Suggests a Link to the Evolution of Alcoholic Fermentation.

    abstract::The yeasts belonging to the Wickerhamiella and Starmerella genera (W/S clade) share a distinctive evolutionary history marked by loss and subsequent reinstatement of alcoholic fermentation mediated by horizontal gene transfer events. Species in this clade also share unusual features of metabolism, namely the preferenc...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2019.02510

    authors: Gonçalves C,Ferreira C,Gonçalves LG,Turner DL,Leandro MJ,Salema-Oom M,Santos H,Gonçalves P

    更新日期:2019-11-01 00:00:00

  • Denitrifying Bacteria Active in Woodchip Bioreactors at Low-Temperature Conditions.

    abstract::Woodchip bioreactor technology removes nitrate from agricultural subsurface drainage by using denitrifying microorganisms. Although woodchip bioreactors have demonstrated success in many field locations, low water temperature can significantly limit bioreactor efficiency and performance. To improve bioreactor performa...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2019.00635

    authors: Jang J,Anderson EL,Venterea RT,Sadowsky MJ,Rosen CJ,Feyereisen GW,Ishii S

    更新日期:2019-04-02 00:00:00

  • Effects of Sulfamethoxazole on the Microbial Community Dynamics During the Anaerobic Digestion Process.

    abstract::Anaerobic digestion (AD) treatment of cattle manure and slurry makes it possible to produce biogas, a renewable and storable biofuel, as well as digestate, a residual organic matter that can be used to replace chemical fertilizers. On the other hand, the intense use of antibiotics (e.g., sulfamethoxazole) in animal hu...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2020.537783

    authors: Mazzurco Miritana V,Massini G,Visca A,Grenni P,Patrolecco L,Spataro F,Rauseo J,Garbini GL,Signorini A,Rosa S,Barra Caracciolo A

    更新日期:2020-09-16 00:00:00

  • Conversion of Methionine to Cysteine in Lactobacillus paracasei Depends on the Highly Mobile cysK-ctl-cysE Gene Cluster.

    abstract::Milk and dairy products are rich in nutrients and are therefore habitats for various microbiomes. However, the composition of nutrients can be quite diverse, in particular among the sulfur containing amino acids. In milk, methionine is present in a 25-fold higher abundance than cysteine. Interestingly, a fraction of s...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2018.02415

    authors: Wüthrich D,Irmler S,Berthoud H,Guggenbühl B,Eugster E,Bruggmann R

    更新日期:2018-10-17 00:00:00

  • Diversity and Expression of Bacterial Metacaspases in an Aquatic Ecosystem.

    abstract::Metacaspases are distant homologs of metazoan caspase proteases, implicated in stress response, and programmed cell death (PCD) in bacteria and phytoplankton. While the few previous studies on metacaspases have relied on cultured organisms and sequenced genomes, no studies have focused on metacaspases in a natural set...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2016.01043

    authors: Asplund-Samuelsson J,Sundh J,Dupont CL,Allen AE,McCrow JP,Celepli NA,Bergman B,Ininbergs K,Ekman M

    更新日期:2016-07-06 00:00:00

  • Co-occurrence Analysis of Microbial Taxa in the Atlantic Ocean Reveals High Connectivity in the Free-Living Bacterioplankton.

    abstract::We determined the taxonomic composition of the bacterioplankton of the epipelagic zone of the Atlantic Ocean along a latitudinal transect (51°S-47°N) using Illumina sequencing of the V5-V6 region of the 16S rRNA gene and inferred co-occurrence networks. Bacterioplankon community composition was distinct for Longhursti...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2016.00649

    authors: Milici M,Deng ZL,Tomasch J,Decelle J,Wos-Oxley ML,Wang H,Jáuregui R,Plumeier I,Giebel HA,Badewien TH,Wurst M,Pieper DH,Simon M,Wagner-Döbler I

    更新日期:2016-05-06 00:00:00

  • KPC-3-Producing Klebsiella pneumoniae in Portugal Linked to Previously Circulating Non-CG258 Lineages and Uncommon Genetic Platforms (Tn4401d-IncFIA and Tn4401d-IncN).

    abstract::KPC-3-producing bacteria are endemic in many countries but only recently became apparent their wide distribution in different Portuguese hospitals. The aim of this study is to characterize genetic backgrounds associated with bla KPC-3 among Klebsiella pneumoniae isolates recently identified on non-hospitalized patient...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2016.01000

    authors: Rodrigues C,Bavlovič J,Machado E,Amorim J,Peixe L,Novais Â

    更新日期:2016-06-28 00:00:00

  • Single-Molecule Sequencing (PacBio) of the Staphylococcus capitis NRCS-A Clone Reveals the Basis of Multidrug Resistance and Adaptation to the Neonatal Intensive Care Unit Environment.

    abstract::The multi-resistant Staphylococcus capitis clone NRCS-A has recently been described as a major pathogen causing nosocomial, late-onset sepsis (LOS) in preterm neonates worldwide. NRCS-A representatives exhibit an atypical antibiotic resistance profile. Here, the complete closed genome (chromosomal and plasmid sequence...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2016.01991

    authors: Simões PM,Lemriss H,Dumont Y,Lemriss S,Rasigade JP,Assant-Trouillet S,Ibrahimi A,El Kabbaj S,Butin M,Laurent F

    更新日期:2016-12-15 00:00:00

  • Efficiency of Airborne Sample Analysis Platform (ASAP) bioaerosol sampler for pathogen detection.

    abstract::The threat of bioterrorism and pandemics has highlighted the urgency for rapid and reliable bioaerosol detection in different environments. Safeguarding against such threats requires continuous sampling of the ambient air for pathogen detection. In this study we investigated the efficacy of the Airborne Sample Analysi...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章

    doi:10.3389/fmicb.2015.00512

    authors: Sharma A,Clark E,McGlothlin JD,Mittal SK

    更新日期:2015-05-27 00:00:00

  • Coronaviruses in the Sea.

    abstract::Interest in coronaviruses because of the 2019 novel coronavirus (SARS-CoV-2) pandemic has generated concern about their occurrence and persistence in aquatic habitats. Coronaviruses are not quantitatively significant constituents of marine virioplankton. Members of the Nidovirales (to which human coronaviruses belong)...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章,评审

    doi:10.3389/fmicb.2020.01795

    authors: Mordecai GJ,Hewson I

    更新日期:2020-07-24 00:00:00

  • oriC-encoded instructions for the initiation of bacterial chromosome replication.

    abstract::Replication of the bacterial chromosome initiates at a single origin of replication that is called oriC. This occurs via the concerted action of numerous proteins, including DnaA, which acts as an initiator. The origin sequences vary across species, but all bacterial oriCs contain the information necessary to guide as...

    journal_title:Frontiers in microbiology

    pub_type: 杂志文章,评审

    doi:10.3389/fmicb.2014.00735

    authors: Wolański M,Donczew R,Zawilak-Pawlik A,Zakrzewska-Czerwińska J

    更新日期:2015-01-06 00:00:00