Building the monocot tree of death: Progress and challenges emerging from the macrofossil-rich Zingiberales.

Abstract:

PREMISE OF THE STUDY:Inclusion of fossils in phylogenetic analyses is necessary in order to construct a comprehensive "tree of death" and elucidate evolutionary history of taxa; however, such incorporation of fossils in phylogenetic reconstruction is dependent on the availability and interpretation of extensive morphological data. Here, the Zingiberales, whose familial relationships have been difficult to resolve with high support, are used as a case study to illustrate the importance of including fossil taxa in systematic studies. METHODS:Eight fossil taxa and 43 extant Zingiberales were coded for 39 morphological seed characters, and these data were concatenated with previously published molecular sequence data for analysis in the program MrBayes. KEY RESULTS:Ensete oregonense is confirmed to be part of Musaceae, and the other seven fossils group with Zingiberaceae. There is strong support for Spirematospermum friedrichii, Spirematospermum sp. 'Goth', S. wetzleri, and Striatornata sanantoniensis in crown Zingiberaceae while "Musa" cardiosperma, Spirematospermum chandlerae, and Tricostatocarpon silvapinedae are best considered stem Zingiberaceae. Inclusion of fossils explains how different topologies from morphological and molecular data sets is due to shared plesiomorphic characters shared by Musaceae, Zingiberaceae, and Costaceae, and most of the fossils. CONCLUSIONS:Inclusion of eight fossil taxa expands the Zingiberales tree and helps explain the difficulty in resolving relationships. Inclusion of fossils was possible in part due to a large morphological data set built using nondestructive microcomputed tomography data. Collaboration between paleo- and neobotanists and technology such as microcomputed tomography will help to build the tree of death and ultimately improve our understanding of the evolutionary history of monocots.

journal_name

Am J Bot

authors

Smith SY,Iles WJD,Benedict JC,Specht CD

doi

10.1002/ajb2.1123

subject

Has Abstract

pub_date

2018-08-01 00:00:00

pages

1389-1400

issue

8

eissn

0002-9122

issn

1537-2197

journal_volume

105

pub_type

杂志文章
  • Phylogeny and biogeography of exindusiate Andean Polystichum (Dryopteridaceae).

    abstract:PREMISE OF THE STUDY:Uplift of the tropical Andes had a significant impact on the diversification of South American flora and fauna. Recent biogeographic inquiries have established patterns of Andean divergence, but investigations on ferns are scant. The fern genus Polystichum Roth (Dryopteridaceae) combines widespread...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1300191

    authors: McHenry MA,Barrington DS

    更新日期:2014-02-01 00:00:00

  • Effects of selenium hyperaccumulators on soil selenium distribution and vegetation properties.

    abstract:PREMISE:The ecological implications of hyperaccumulation have been investigated at the organismal level, but are poorly understood at the plant community level. Questions addressed here were: Does the presence of selenium (Se) hyperaccumulators affect Se distribution and concentration in their native soil, and do hyper...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.1002/ajb2.1500

    authors: Reynolds RJB,Jones RR,Heiner J,Crane KM,Pilon-Smits EAH

    更新日期:2020-07-01 00:00:00

  • Spatial genetic structure in four understory Psychotria species (Rubiaceae) and implications for tropical forest diversity.

    abstract::• Premise of the study: Tropical forests are the most species-rich terrestrial communities on Earth, and understory trees and shrubs comprise a large fraction of their plant species diversity, especially at high rainfalls. The mechanisms responsible for generating such high levels of diversity remain unknown. One hypo...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1300460

    authors: Theim TJ,Shirk RY,Givnish TJ

    更新日期:2014-07-01 00:00:00

  • Fruits of Koelreuteria (Sapindaceae) from the Cenozoic throughout the northern hemisphere: their ecological, evolutionary, and biogeographic implications.

    abstract:PREMISE OF THE STUDY:Koelreuteria (Sapindaceae) has four extant deciduous tree species, disjunctly distributed in eastern Asia and the Fiji Islands. While K. paniculata is widely cultivated, the biogeographic origin and evolutionary history of Koelreuteria remain unclear. METHODS:Fruits, pollen, wood, and leaves of cl...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1200415

    authors: Wang Q,Manchester SR,Gregor HJ,Shen S,Li ZY

    更新日期:2013-02-01 00:00:00

  • The sporophyte-less filmy fern of eastern North America Trichomanes intricatum (Hymenophyllaceae) has the chloroplast genome of an Asian species.

    abstract::Trichomanes intricatum, the sporophyte-less filmy fern of the eastern United States, has been considered to be a species whose sporophyte generation has become extinct or is possibly still present among the many species of Trichomanes s.l. in the new world tropics but unable to grow in a temperate climate. A close rel...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.0800122

    authors: Ebihara A,Farrar DR,Ito M

    更新日期:2008-12-01 00:00:00

  • Tempo and mode of flower color evolution.

    abstract:UNLABELLED:• PREMISE OF THE STUDY:Flower color is one of the best-studied floral traits in terms of its genetic basis and ecological significance, yet few studies have examined the processes that shape its evolution across deep timescales. Advances in comparative methods along with larger phylogenies for floral radiat...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1500163

    authors: Smith SD,Goldberg EE

    更新日期:2015-07-01 00:00:00

  • Ontologies as integrative tools for plant science.

    abstract:PREMISE OF THE STUDY:Bio-ontologies are essential tools for accessing and analyzing the rapidly growing pool of plant genomic and phenomic data. Ontologies provide structured vocabularies to support consistent aggregation of data and a semantic framework for automated analyses and reasoning. They are a key component of...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1200222

    authors: Walls RL,Athreya B,Cooper L,Elser J,Gandolfo MA,Jaiswal P,Mungall CJ,Preece J,Rensing S,Smith B,Stevenson DW

    更新日期:2012-08-01 00:00:00

  • Into Africa: Molecular phylogenetics and historical biogeography of sub-Saharan African woodferns (Dryopteris).

    abstract:PREMISE OF THE STUDY:Our goal was to infer the phylogenetic relationships and historical biogeography of the genus Dryopteris with a focus on taxa in sub-Saharan Africa and neighboring islands. In general, little is known about the relationships between African fern species and their congeners in other geographic regio...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1600392

    authors: Sessa EB,Juslén A,Väre H,Chambers SM

    更新日期:2017-03-01 00:00:00

  • Greatly reduced phylogenetic structure in the cultivated potato clade (Solanum section Petota pro parte).

    abstract:PREMISE OF THE STUDY:The species boundaries of wild and cultivated potatoes are controversial, with most of the taxonomic problems in the cultivated potato clade. We here provide the first in-depth phylogenetic study of the cultivated potato clade to explore possible causes of these problems. METHODS:We examined 131 d...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.1002/ajb2.1008

    authors: Spooner DM,Ruess H,Arbizu CI,Rodríguez F,Solís-Lemus C

    更新日期:2018-01-01 00:00:00

  • Ecological and genetic factors contributing to the low frequency of male sterility in Chamaecrista Fasciculata (Fabaceae).

    abstract::Bumble bee pollinated Chamaecrista fasciculata provides pollen as the sole reward to its pollinators. Male sterility, expressed as an absence or nearly complete absence of pollen production, occurs in low frequency in populations of C. fasciculata. Here we describe experiments, using C. fasciculata, to examine frequen...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:

    authors: Williams HL,Fenster CB

    更新日期:1998-09-01 00:00:00

  • Reexamination of series relationships of South American wild potatoes (Solanaceae: Solanum sect. Petota): evidence from chloroplast DNA restriction site variation.

    abstract::Chloroplast DNA (cpDNA) restriction enzyme site analysis was used to test hypotheses of series and superseries affiliations of 76 taxa, representing 11 of the 13 South American series (material unavailable for two series) of wild potatoes (Solanum sect. Petota) recognized in the latest classification by Hawkes. The cl...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:

    authors: Spooner D,Castillo R

    更新日期:1997-05-01 00:00:00

  • Calochortus gunnisonii furthers evidence for the complex genetic legacy of historical climate change in the southern Rocky Mountains.

    abstract:PREMISE OF THE STUDY:Climate cycles of the Quaternary have impacted plants at a global scale, leaving behind a complex genetic legacy. Species of the northern Rocky Mountains of North America were exposed to more uniform glacial patterns than the central and southern ranges, where synergistic relationships between temp...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.1002/ajb2.1259

    authors: Fuller RS,McGlaughlin ME

    更新日期:2019-03-01 00:00:00

  • Long-distance pine pollen still germinates after meso-scale dispersal.

    abstract::Viability of long-distance pollen links ecological models to the genetic structure of forest tree populations, determining how forests will adapt to climate change and how far genes flow from genetically modified (GM) pine plantations. Addressing this landscape-scale inquiry is feasible when the pollen source, the del...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.0900255

    authors: Williams CG

    更新日期:2010-05-01 00:00:00

  • Constructing a broadly inclusive seed plant phylogeny.

    abstract:PREMISE OF THE STUDY:Large phylogenies can help shed light on macroevolutionary patterns that inform our understanding of fundamental processes that shape the tree of life. These phylogenies also serve as tools that facilitate other systematic, evolutionary, and ecological analyses. Here we combine genetic data from pu...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.1002/ajb2.1019

    authors: Smith SA,Brown JW

    更新日期:2018-03-01 00:00:00

  • Genotype-specific effects of ericoid mycorrhizae on floral traits and reproduction in Vaccinium corymbosum.

    abstract:PREMISE:Most plants interact with mycorrhizal fungi and animal pollinators simultaneously. Yet, whether mycorrhizae affect traits important to pollination remains poorly understood and may depend on the match between host and fungal genotypes. Here, we examined how ericoid mycorrhizal fungi affected flowering phenology...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.1002/ajb2.1372

    authors: Brody AK,Waterman B,Ricketts TH,Degrassi AL,González JB,Harris JM,Richardson LL

    更新日期:2019-11-01 00:00:00

  • Gravity effects on cellulose assembly.

    abstract::The effect of microgravity on cellulose synthesis using the model system of Acetobacter xylinum was the subject of recent investigations using The National Aeronautics and Space Administration's Reduced Gravity Laboratory, a modified KC-135 aircraft designed to produce 20 sec of microgravity during the top of a parabo...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:

    authors: Brown RM Jr,Kudlicka K,Cousins SK,Nagy R

    更新日期:1992-11-01 00:00:00

  • Indirect effects of herbivory on plant-pollinator interactions in invasive Lythrum salicaria.

    abstract:PREMISE OF THE STUDY:Herbivory can affect a plant's fitness in a variety of ways, including modifying the biotic interactions of the plant. In particular, when herbivory influences floral display, we hypothesize that pollinator visitation will be altered accordingly. Here we studied the indirect effects of feeding by t...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1500043

    authors: Russell-Mercier JL,Sargent RD

    更新日期:2015-05-01 00:00:00

  • Amplified fragment length polymorphisms (AFLP) reveal details of polyploid evolution in Dactylorhiza (Orchidaceae).

    abstract::The utility of the PCR-based AFLP technique (polymerase chain reaction; amplified fragment length polymorphisms) was explored in elucidating details of polyploid evolution in the Eurasian orchid genus Dactylorhiza. We emphasized Swedish taxa but also included some material from the British Isles and elsewhere in Europ...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:

    authors: Hedrén M,Fay MF,Chase MW

    更新日期:2001-10-01 00:00:00

  • Comparative anatomical and developmental analysis of dry and fleshy fruits of Solanaceae.

    abstract:UNLABELLED: PREMISE OF THE STUDY:An anatomical examination of dry and fleshy fruits within the Solanaceae was carried out to identify comparable stages throughout development as well as features exclusive to each type of fruit. We studied fruit development of Nicotiana and Petunia, which have the plesiomorphic capsula...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1100097

    authors: Pabón-Mora N,Litt A

    更新日期:2011-09-01 00:00:00

  • Comparative height crown allometry and mechanical design in 22 tree species of Kuala Belalong rainforest, Brunei, Borneo.

    abstract::In rainforests, trunk size, strength, crown position, and geometry of a tree affect light interception and the likelihood of mechanical failure. Allometric relationships of tree diameter, wood density, and crown architecture vs. height are described for a diverse range of rainforest trees in Brunei, northern Borneo. T...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.94.12.1951

    authors: Osunkoya OO,Omar-Ali K,Amit N,Dayan J,Daud DS,Sheng TK

    更新日期:2007-12-01 00:00:00

  • TILLERING AND MORTALITY OF THE SALT MARSH CORDGRASS, SPARTINA ALTERNIFLORA.

    abstract::Recruitment and mortality of Spartina alterniflora tillers and culms were estimated from measurements of live standing crops at Wallops Island, Virginia. Stands of tall and medium form grass produced from 452 to 1,227 tillers m-2 yr-1 . Those tillered in spring lengthened into culms their first year, while those tille...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.1002/j.1537-2197.1983.tb12430.x

    authors: Reidenbaugh TG

    更新日期:1983-01-01 00:00:00

  • Vulnerability to xylem cavitation and the distribution of Sonoran Desert vegetation.

    abstract::We studied 15 riparian and upland Sonoran desert species to evaluate how the limitation of xylem pressure (Ψ(x)) by cavitation corresponded with plant distribution along a moisture gradient. Riparian species were obligate riparian trees (Fraxinus velutina, Populus fremontii, and Salix gooddingii), native shrubs (Bacch...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:

    authors: Pockman WT,Sperry JS

    更新日期:2000-09-01 00:00:00

  • Development of microsatellite markers for Anadenanthera colubrina var. cebil (Fabaceae), a native tree from South America.

    abstract:PREMISE OF THE STUDY:Microsatellite primers were developed in the native legume tree Anadenanthera colubrina var. cebil to study the genetic diversity and genetic structure in natural populations in Argentina. METHODS AND RESULTS:Nine microsatellite markers were identified using a genomic library enriched for tandemly...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1200078

    authors: Barrandeguy ME,Prinz K,García MV,Finkeldey R

    更新日期:2012-09-01 00:00:00

  • Pollination systems of trees in Kakachi, a mid-elevation wet evergreen forest in Western Ghats, India.

    abstract::A long-term survey (1990-2000) of pollination modes of 86 tree species was carried out at Kakachi, a mid-elevation wet forest site in southern Western Ghats, India. Observations were made on 86 tree species. This comprises 80% of the total arborescent species present in the site. Approximately 75% of these species wer...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.90.4.650

    authors: Devy MS,Davidar P

    更新日期:2003-04-01 00:00:00

  • Complex origins of breadfruit (Artocarpus altilis, Moraceae): implications for human migrations in Oceania.

    abstract::Breadfruit (Artocarpus altilis, Moraceae), a traditional starch crop in Oceania, has enjoyed legendary status ever since its role in the infamous mutiny aboard the H.M.S. Bounty in 1789, yet its origins remain unclear. Breadfruit's closest relatives are A. camansi and A. mariannensis. DNA fingerprinting data (AFLP, am...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.91.5.760

    authors: Zerega NJ,Ragone D,Motley TJ

    更新日期:2004-05-01 00:00:00

  • Allometry of cells and tissues within leaves.

    abstract:UNLABELLED: PREMISE OF THE STUDY:Allometric relationships among the dimensions of leaf cells, cell walls, and tissues, and whole-leaf thickness and area are likely to have key implications for leaf construction and function, but have remained virtually untested, despite the explosion of interest in allometric analysis...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1200608

    authors: John GP,Scoffoni C,Sack L

    更新日期:2013-10-01 00:00:00

  • A new fossil flower from the Turonian of New Jersey: Dressiantha bicarpellata gen. et sp. nov. (Capparales).

    abstract::Recent discoveries of fossil reproductive structures from deposits of the Raritan Formation in New Jersey (Turonian, Upper Cretaceous, ~90 million years BP) include a previously undescribed representative of the Order Capparales. The fossils are usually charcoalified with three-dimensional structure and excellent anat...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:

    authors: Gandolfo M,Nixon K,Crepet W

    更新日期:1998-07-01 00:00:00

  • Development and characterization of microsatellite loci in Pericopsis elata (Fabaceae) using a cost-efficient approach.

    abstract:PREMISE OF THE STUDY:Microsatellite loci were developed in the endangered Pericopsis elata using a combination of low-cost procedures. METHODS AND RESULTS:Microsatellite isolation was performed simultaneously on three distinct species through a newly available procedure that associates multiplex microsatellite enrichm...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1100070

    authors: Micheneau C,Dauby G,Bourland N,Doucet JL,Hardy OJ

    更新日期:2011-10-01 00:00:00

  • Phylogeny of Rutaceae based on twononcoding regions from cpDNA.

    abstract::Primarily known only by the edible fruits of Citrus, Rutaceae comprise a large (c. 160 genera and 1900 species), morphologically diverse, cosmopolitan family. Of its extraordinary array of secondary chemical compounds, many have medicinal, antimicrobial, insecticidal, or herbicidal properties. To assist with the much-...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.2007313

    authors: Groppo M,Pirani JR,Salatino ML,Blanco SR,Kallunki JA

    更新日期:2008-08-01 00:00:00

  • Leaf longevity of Oxalis acetosella (Oxalidaceae) in the Catskill Mountains, New York, USA.

    abstract::Leaf habit correlates with multiple physiological traits. Understanding ecophysiology is therefore dependent on knowledge of leaf habit. A variety of leaf habits exists within forest understory plant communities. Oxalis acetosella is one such understory plant and has long been considered a wintergreen, meaning that it...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.91.9.1371

    authors: Tessier JT

    更新日期:2004-09-01 00:00:00