Abstract:
:Current methods struggle to reconstruct and visualize the genomic relationships of large numbers of bacterial genomes. GrapeTree facilitates the analyses of large numbers of allelic profiles by a static "GrapeTree Layout" algorithm that supports interactive visualizations of large trees within a web browser window. GrapeTree also implements a novel minimum spanning tree algorithm (MSTree V2) to reconstruct genetic relationships despite high levels of missing data. GrapeTree is a stand-alone package for investigating phylogenetic trees plus associated metadata and is also integrated into EnteroBase to facilitate cutting edge navigation of genomic relationships among bacterial pathogens.
journal_name
Genome Resjournal_title
Genome researchauthors
Zhou Z,Alikhan NF,Sergeant MJ,Luhmann N,Vaz C,Francisco AP,Carriço JA,Achtman Mdoi
10.1101/gr.232397.117subject
Has Abstractpub_date
2018-09-01 00:00:00pages
1395-1404issue
9eissn
1088-9051issn
1549-5469pii
gr.232397.117journal_volume
28pub_type
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