Utilization of urea and cyanate in waters overlying and within the eastern tropical north Pacific oxygen deficient zone.

abstract：:The aim of this work is to document the complex nutritional strategy developed by kleptoplastic intertidal foraminifera. We study the mixotrophic ability of a common intertidal foraminifer, Elphidium williamsoni, by (i) investigating the phylogenetic identity of the foraminiferal kleptoplasts, (ii) following their oxy...

journal_title：FEMS microbiology ecology

authors： Jauffrais T,LeKieffre C,Schweizer M,Jesus B,Metzger E,Geslin E

更新日期：2019-05-01 00:00:00

abstract：:Subsurface removal of arsenic by injection with oxygenated groundwater has been proposed as a viable technology for obtaining 'safe' drinking water in Bangladesh. While the oxidation of ferrous iron to solid ferric iron minerals, to which arsenic adsorbs, is assumed to be driven by abiotic reactions, metal-cycling mic...

journal_title：FEMS microbiology ecology

authors： Hassan Z,Sultana M,van Breukelen BM,Khan SI,Röling WF

更新日期：2015-04-01 00:00:00

abstract：:The development of nitrogen-fixing nodules of the Rhizobium-legume symbiosis, especially the early stages of root hair deformation and curling, infection thread formation, and nodule initiation, has been well studied from a genetic standpoint. In contrast, the factors important for the colonization of surfaces by rhiz...

journal_title：FEMS microbiology ecology

authors： Fujishige NA,Kapadia NN,De Hoff PL,Hirsch AM

更新日期：2006-05-01 00:00:00

abstract：:Tedania sp. is a dominant sponge that is ubiquitous along the southeast coast of China. High-throughput sequencing and transmission electron microscopy were used to describe a detailed profile of sponge-associated microbiomes at seven life stages: adult, embryo-containing spawning adult, embryo, pre-competent larva at...

journal_title：FEMS microbiology ecology

authors： Wu S,Ou H,Liu T,Wang D,Zhao J

更新日期：2018-05-01 00:00:00

abstract：:A polyphasic approach that included PCR-dependent and PCR-independent molecular techniques was applied to analyze the prokaryotic community in surface waters of shallow Antarctic lakes. The in situ abundance of different bacterial groups was determined by the fluorescence in situ hybridization, whereas bacterial diver...

journal_title：FEMS microbiology ecology

authors： Michaud L,Caruso C,Mangano S,Interdonato F,Bruni V,Lo Giudice A

更新日期：2012-11-01 00:00:00

abstract：:The advent of next-generation sequencing has allowed huge amounts of DNA sequence data to be produced, advancing the capabilities of microbial ecosystem studies. The current challenge is to identify from which microorganisms and genes the DNA originated. Several tools and databases are available for annotating DNA seq...

journal_title：FEMS microbiology ecology

authors： Randle-Boggis RJ,Helgason T,Sapp M,Ashton PD

更新日期：2016-07-01 00:00:00

abstract：:Selenium is an essential trace element that can modulate the gut microbiome with an impact on host health. The present study aimed to evaluate the effects of organic (selenium-enriched yeast) vs inorganic (sodium selenite) selenium source on fecal end-fermentation products and gut microbiome of puppies from 20 to 52 w...

journal_title：FEMS microbiology ecology

authors： Pereira AM,Pinna C,Biagi G,Stefanelli C,Maia MRG,Matos E,Segundo MA,Fonseca AJM,Cabrita ARJ

更新日期：2020-10-21 00:00:00

abstract：:Replant diseases often occur when pome and stone fruits are grown in soil that had previously been planted with the same or similar plant species. They typically lead to reductions in plant growth, crop yield and production duration. In this project, greenhouse assays were used to identify a peach orchard soil that ca...

journal_title：FEMS microbiology ecology

authors： Bent E,Loffredo A,Yang JI,McKenry MV,Becker JO,Borneman J

更新日期：2009-05-01 00:00:00

abstract：:Pollution of nearshore waters with disease-causing microorganisms impacts ecosystems health through illness and deaths in people and wildlife, as well as negative socioeconomic consequences of impaired marine resources. Insight on pathogen ecology in coastal habitats is crucial for accurately mitigating inputs and imp...

journal_title：FEMS microbiology ecology

authors： Shapiro K,Silver M,Byrne BA,Berardi T,Aguilar B,Melli A,Smith WA

更新日期：2018-11-01 00:00:00

abstract：:Rock varnish is a microbial habitat, characterised by thin (5-500 μm) and shiny coatings of iron (Fe) and manganese (Mn) oxides associated with clay minerals. This structure is well studied by geologists, and recently there have been reports about the taxonomical composition of its microbiome. In this study, we invest...

journal_title：FEMS microbiology ecology

authors： Esposito A,Borruso L,Rattray JE,Brusetti L,Ahmed E

更新日期：2019-12-01 00:00:00

abstract：:Rimicaris exoculata dominates the megafauna of several Mid-Atlantic Ridge hydrothermal sites. Its gut is full of sulphides and iron-oxide particles and harbours microbial communities. Although a trophic symbiosis has been suggested, their role remains unclear. In vivo starvation experiments in pressurized vessels were...

journal_title：FEMS microbiology ecology

authors： Durand L,Zbinden M,Cueff-Gauchard V,Duperron S,Roussel EG,Shillito B,Cambon-Bonavita MA

更新日期：2010-02-01 00:00:00

abstract：:A total of 39 phenol- and p-cresol-degraders isolated from the river water continuously polluted with phenolic compounds of oil shale leachate were studied. Species identification by BIOLOG GN analysis revealed 21 strains of Pseudomonas fluorescens (4, 8 and 9 of biotypes A, C and G, respectively), 12 of Pseudomonas m...

journal_title：FEMS microbiology ecology

authors： Heinaru E,Truu J,Stottmeister U,Heinaru A

更新日期：2000-03-01 00:00:00

abstract：:Phase-separation and -segregation (boiling/distillation of subseafloor hydrothermal fluids) represent the primary mechanisms causing intra-field variations in vent fluid compositions. To determine whether this geochemical process affects the formation of microbial communities, we examined the microbial communities at ...

journal_title：FEMS microbiology ecology

authors： Nakagawa S,Takai K,Inagaki F,Chiba H,Ishibashi J,Kataoka S,Hirayama H,Nunoura T,Horikoshi K,Sako Y

更新日期：2005-09-01 00:00:00

abstract：:Microbial transformation of n-alkanes in anaerobic ecosystems plays a pivotal role in biogeochemical carbon cycling and bioremediation, but the requisite genetic machinery is not well elucidated.Desulfatibacillum alkenivorans AK-01 utilizes n-alkanes (C13 to C18) and contains two genomic loci encoding alkylsuccinate s...

journal_title：FEMS microbiology ecology

authors： Herath A,Wawrik B,Qin Y,Zhou J,Callaghan AV

更新日期：2016-05-01 00:00:00

abstract：:In view of their key roles in many soil- and plant-related processes, we hypothesized that soil microorganisms could play a larger role in determining wheat baking quality than nitrogen fertilization. A field experiment was conducted under bread wheat production conditions, where different fertilization treatments, ra...

journal_title：FEMS microbiology ecology

authors： Yergeau É,Quiza L,Tremblay J

更新日期：2020-02-01 00:00:00

abstract：:Current strategies to protect groundwater sources from microbial contamination (e.g., wellhead protection areas) rely upon natural attenuation of microorganisms between wells or springs and potential sources of contamination and are determined using average (macroscopic) groundwater flow velocities defined by Darcy's ...

journal_title：FEMS microbiology ecology

authors： Taylor R,Cronin A,Pedley S,Barker J,Atkinson T

更新日期：2004-07-01 00:00:00

abstract：:Matrix-embedded, surface-attached microbial communities, known as biofilms, profusely colonise industrial cooling water systems, where the availability of nutrients and organic matter favours rapid microbial proliferation and their adhesion to surfaces in the evaporative fill material, heat exchangers, water reservoir...

journal_title：FEMS microbiology ecology

authors： Di Pippo F,Di Gregorio L,Congestri R,Tandoi V,Rossetti S

更新日期：2018-05-01 00:00:00

abstract：:In the present study, automated ribosomal intergenic spacer analysis (ARISA), library sequence analysis, real-time PCR detection of Bacteroides uniformis and Campylobacter coli and dot-blot hybridizations of Clostridiaceae were used to identify trends in microbial colonization of the ceca of male turkeys. Two separate...

journal_title：FEMS microbiology ecology

authors： Scupham AJ

更新日期：2007-04-01 00:00:00

abstract：:Acropora white syndrome (AWS) is characterized by rapid tissue loss revealing the white underlying skeleton and affects corals worldwide; however, reports of causal agents are conflicting. Samples were collected from healthy and diseased corals and seawater around American Samoa and bacteria associated with AWS charac...

journal_title：FEMS microbiology ecology

authors： Wilson B,Aeby GS,Work TM,Bourne DG

更新日期：2012-05-01 00:00:00

abstract：:We report first insights into a representative genome of rice cluster I (RC-I), a major group of as-yet uncultured methanogens. The starting point of our study was the methanogenic consortium MRE50 that had been stably maintained for 3 years by consecutive transfers to fresh medium and anaerobic incubation at 50 degre...

journal_title：FEMS microbiology ecology

authors： Erkel C,Kemnitz D,Kube M,Ricke P,Chin KJ,Dedysh S,Reinhardt R,Conrad R,Liesack W

更新日期：2005-07-01 00:00:00

abstract：:Definition of lichens has evolved from bi(tri)partite associations to multi-species symbioses, where bacteria would play essential roles. Besides, although soil bacterial communities are known to be affected by edaphic factors, when lichens grow upon them these could become less preponderant. We hypothesized that the ...

journal_title：FEMS microbiology ecology

authors： Leiva D,Clavero-León C,Carú M,Orlando J

更新日期：2016-11-01 00:00:00

abstract：:On-board flow cytometric determinations of picoplankton abundance (i.e. Synechococcus spp., Prochlorococcus spp., picoeukaryotes and also heterotrophic bacteria) were obtained in the East China Sea in fall of 2000 and 2003. The average abundances of Synechococcus, Prochlorococcus, picoeukaryotes and heterotrophic bact...

journal_title：FEMS microbiology ecology

authors： Pan LA,Zhang LH,Zhang J,Gasol JM,Chao M

更新日期：2005-04-01 00:00:00

abstract：:Although most chitons (Mollusca: Polyplacophora) are shallow-water molluscs, diverse species also occur in deep-sea habitats. We investigated the feeding strategies of two species, Leptochiton boucheti and Nierstraszella lineata, recovered on sunken wood sampled in the western Pacific, close to the Vanuatu Islands. Th...

journal_title：FEMS microbiology ecology

authors： Duperron S,Pottier MA,Léger N,Gaudron SM,Puillandre N,Le Prieur S,Sigwart JD,Ravaux J,Zbinden M

更新日期：2013-03-01 00:00:00

abstract：:Methanogenic biodegradation involves the cooperative metabolism of syntrophic bacteria that catalyse the initial attack and subsequent degradation of hydrocarbons, and methanogens that convert intermediates such as hydrogen and carbon dioxide, formate, and/or acetate to methane. The identity of syntrophic microbes and...

journal_title：FEMS microbiology ecology

authors： Fowler SJ,Gutierrez-Zamora ML,Manefield M,Gieg LM

更新日期：2014-09-01 00:00:00

abstract：:A large part of ecosystem function in woodland systems depends on soil fungal communities. However, global climate change has the potential to fundamentally alter these communities as fungal species are filtered with changing environmental conditions. In this study, we examined the potential effects of climate on host...

journal_title：FEMS microbiology ecology

authors： Bui A,Orr D,Lepori-Bui M,Konicek K,Young HS,Moeller HV

更新日期：2020-12-02 00:00:00

abstract：:Aerobic anoxygenic phototrophic bacteria (AAPB) are a group of heterotrophic bacteria capable of photosynthesis. The dynamics of AAPB in the East China Sea, a typical marginal sea characterized by diverse physical-chemical and ecological conditions, were investigated from April 2002 to September 2003. The results show...

journal_title：FEMS microbiology ecology

authors： Zhang Y,Jiao N

更新日期：2007-09-01 00:00:00

abstract：:The aim of this work was to relate depth profiles of prokaryotic community composition with geochemical processes in the deep subseafloor biosphere at two shallow-water sites on the Peru Margin in the Pacific Ocean (ODP Leg 201, sites 1228 and 1229). Principal component analysis of denaturing gradient gel electrophore...

journal_title：FEMS microbiology ecology

authors： Fry JC,Webster G,Cragg BA,Weightman AJ,Parkes RJ

更新日期：2006-10-01 00:00:00

abstract：:The recent description of the polychromatic sponge Plakina kanaky revealed original microsymbionts, with some morphotypes recorded for the first time in Homoscleromorpha and others never before observed in other sponge groups. Illumina 16S amplicon sequencing was used to characterize this microbial community by compar...

journal_title：FEMS microbiology ecology

authors： Ruiz C,Villegas-Plazas M,Thomas OP,Junca H,Pérez T

更新日期：2020-04-01 00:00:00

abstract：:This study investigated the response of antibiotic resistance genes (ARGs) to nanosilver (Ag) in lab-scale nitrifying sequencing batch reactors (SBRs), compared to Ag(+)-dosed and undosed controls. Quantitative polymerase chain reaction (q-PCR) targeting sul1, tet(O), ermB and the class I integron gene intI1 and corre...

journal_title：FEMS microbiology ecology

authors： Ma Y,Metch JW,Yang Y,Pruden A,Zhang T

更新日期：2016-03-01 00:00:00

abstract：:Molecular tools for the detection of the newly described acetic acid bacterium Gluconacetobacter sacchari from the pink sugarcane mealybug, Saccharicoccus sacchari Cockerell (Homiptera: Pseudococcidae), and in the sugarcane leaf sheath microenvironment were developed. G. sacchari specific 16S rRNA-targeted oligonucleo...

journal_title：FEMS microbiology ecology

authors： Franke IH,Fegan M,Hayward C,Leonard G,Sly LI

更新日期：2000-01-01 00:00:00