Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom.

Abstract:

:Hi-C experiments study how genomes fold in 3D, generating contact maps containing features as small as 20 bp and as large as 200 Mb. Here we introduce Juicebox, a tool for exploring Hi-C and other contact map data. Juicebox allows users to zoom in and out of Hi-C maps interactively, just as a user of Google Earth might zoom in and out of a geographic map. Maps can be compared to one another, or to 1D tracks or 2D feature sets.

journal_name

Cell Syst

journal_title

Cell systems

authors

Durand NC,Robinson JT,Shamim MS,Machol I,Mesirov JP,Lander ES,Aiden EL

doi

10.1016/j.cels.2015.07.012

subject

Has Abstract

pub_date

2016-07-01 00:00:00

pages

99-101

issue

1

eissn

2405-4712

issn

2405-4720

pii

S2405-4712(15)00054-X

journal_volume

3

pub_type

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