Next Generation Sequencing for Detection and Discovery of Plant Viruses and Viroids: Comparison of Two Approaches.

abstract：:Elevational gradients are associated not only with variations in temperature and precipitation, but also with shifts in vegetation types and changes in soil physicochemical properties. While large-scale elevational patterns of soil microbial diversity, such as monotonic declines and hump-shaped models, have been repor...

journal_title：Frontiers in microbiology

authors： Ni Y,Yang T,Zhang K,Shen C,Chu H

更新日期：2018-08-07 00:00:00

abstract：:Tuberculosis (TB) affects humans and other animals and is caused by bacteria from the Mycobacterium tuberculosis complex (MTBC). Previous studies have shown that there are at least nine members of the MTBC infecting animals other than humans; these have also been referred to as ecotypes. However, the ecology and the e...

journal_title：Frontiers in microbiology

authors： Brites D,Loiseau C,Menardo F,Borrell S,Boniotti MB,Warren R,Dippenaar A,Parsons SDC,Beisel C,Behr MA,Fyfe JA,Coscolla M,Gagneux S

更新日期：2018-11-27 00:00:00

abstract：:Apple by-products (ABP) underwent fermentation (48 h at 30°C, Fermented-ABP) with a selected binary culture of Weissella cibaria PEP23F and Saccharomyces cerevisiae AN6Y19. Compared to Raw-ABP and Chemically Acidified-ABP (CA-ABP), fermentation markedly increased the hydration properties of ABP. Fermentation led to th...

journal_title：Frontiers in microbiology

authors： Cantatore V,Filannino P,Gambacorta G,De Pasquale I,Pan S,Gobbetti M,Di Cagno R

更新日期：2019-11-06 00:00:00

abstract：:The Deepwater Horizon accident has brought oil contamination of deep-sea environments to worldwide attention. The risk for new deep-sea spills is not expected to decrease in the future, as political pressure mounts to access deep-water fossil reserves, and poorly tested technologies are used to access oil. This also a...

journal_title：Frontiers in microbiology

authors： Scoma A,Yakimov MM,Boon N

更新日期：2016-08-03 00:00:00

abstract：:Chagas disease is one of the prevalent neglected tropical diseases, affecting at least 6-7 million individuals in Latin America. It is caused by the protozoan parasite Trypanosoma cruzi, which is transmitted to vertebrate hosts by blood-sucking insects. After infection, the parasite invades and multiplies in the myoca...

journal_title：Frontiers in microbiology

authors： Watanabe Costa R,da Silveira JF,Bahia D

更新日期：2016-03-31 00:00:00

abstract：:Advances in high-throughput sequencing technologies allow a more complete study of microbial plankton community composition and diversity, especially in the rare microbial biosphere. The DNA extraction of plankton is a key step for such studies; however, little is known about its influences on the abundant or rare mic...

journal_title：Frontiers in microbiology

authors： Liu M,Xue Y,Yang J

更新日期：2019-03-11 00:00:00

abstract：:Influenza A virus (IAV) is a human respiratory pathogen that causes seasonal epidemics and occasional global pandemics with devastating levels of morbidity and mortality. Currently approved treatments against influenza are losing effectiveness, as new viral strains are often refractory to conventional treatments. Thus...

journal_title：Frontiers in microbiology

authors： Wang L,Li W,Li S

更新日期：2016-06-03 00:00:00

abstract：:Microbial degradation of nicotine is an important process to control nicotine residues in the aqueous environment. In this study, a high active nicotine degradation strain named Pseudomonas sp. JY-Q was isolated from tobacco waste extract (TWE). This strain could completely degrade 5.0 g l-1 nicotine in 24 h under opt...

journal_title：Frontiers in microbiology

authors： Li J,Qian S,Xiong L,Zhu C,Shu M,Wang J,Jiao Y,He H,Zhang F,Linhardt RJ,Zhong W

更新日期：2017-10-31 00:00:00

abstract：Objectives:Serological tests for COVID-19 have been instrumental in studying the epidemiology of the disease. However, the performance of the currently available tests is plagued by the problem of variability. We have developed a high-throughput serological test capable of simultaneously detecting total immunoglobulins...

journal_title：Frontiers in microbiology

authors： Kubo S,Ohtake N,Miyakawa K,Jeremiah SS,Yamaoka Y,Murohashi K,Hagiwara E,Mihara T,Goto A,Yamazaki E,Ogura T,Kaneko T,Yamanaka T,Ryo A

更新日期：2021-01-15 00:00:00

abstract：:The growth of Streptococcus thermophilus ST12 (ST12) in liquid milk, reconstituted from low-heat skim milk powder reconstituted skim milk (RSM) and in RSM with rennet addition (r-RSM) at 40°C was monitored by microcalorimetry. It was shown that the growth rate of bacteria decreased in renneted samples in comparison wi...

journal_title：Frontiers in microbiology

authors： Stulova I,Kabanova N,Kriščiunaite T,Adamberg K,Laht TM,Vilu R

更新日期：2015-02-10 00:00:00

abstract：:The RstB histidine kinase of the two component system RstAB positively regulates the expression of damselysin (Dly), phobalysin P (PhlyP) and phobalysin C (PhlyC) cytotoxins in the fish and human pathogen Photobacterium damselae subsp. damselae, a marine bacterium of the family Vibrionaceae. However, the function of t...

journal_title：Frontiers in microbiology

authors： Terceti MS,Vences A,Matanza XM,Barca AV,Noia M,Lisboa J,Dos Santos NMS,do Vale A,Osorio CR

更新日期：2019-04-24 00:00:00

abstract：:Bacteria are the highest abundant microorganisms in the soil. To investigate bacteria community structures, diversity, and functions, contrasting them in four different seasons all the year round with/within two different forest type soils of China. We analyzed soil bacterial community based on 16S rRNA gene sequencin...

journal_title：Frontiers in microbiology

authors： Wei H,Peng C,Yang B,Song H,Li Q,Jiang L,Wei G,Wang K,Wang H,Liu S,Liu X,Chen D,Li Y,Wang M

更新日期：2018-07-31 00:00:00

abstract：OBJECTIVES:The purpose of this study was to investigate the prevalence of extended spectrum β-lactamase (ESBL) genes in Escherichia coli isolated from post-weaning diarrhea (PWD) piglets in Heilongjiang province, China. METHODS:Of 458 E. coli isolated from 589 fecal samples from PWD piglets, a total of 198 isolates we...

journal_title：Frontiers in microbiology

authors： Xu G,An W,Wang H,Zhang X

更新日期：2015-10-08 00:00:00

abstract：:Preservation of cultural heritage is of paramount importance worldwide. Microbial colonization of construction materials, such as wood, brick, mortar, and stone in historic buildings can lead to severe deterioration. The aim of the present study was to give modern insight into the phylogenetic diversity and activated ...

journal_title：Frontiers in microbiology

authors： Gutarowska B,Celikkol-Aydin S,Bonifay V,Otlewska A,Aydin E,Oldham AL,Brauer JI,Duncan KE,Adamiak J,Sunner JA,Beech IB

更新日期：2015-09-29 00:00:00

abstract：:The genome sequences of several giant marine sulfur-oxidizing bacteria present evidence of a possible post-transcriptional regulatory network that may have been transmitted to or from two distantly related bacteria lineages. The draft genome of a Cand. "Maribeggiatoa" filament from the Guaymas Basin (Gulf of Californi...

journal_title：Frontiers in microbiology

authors： MacGregor BJ

更新日期：2015-12-16 00:00:00

abstract：:The virulence factor PgtE is an outer membrane protease (omptin) of the zoonotic pathogen Salmonella enterica that causes diseases ranging from gastroenteritis to severe enteric fever. It is surface exposed in bacteria that have a short-chain, i.e., rough LPS, as observed e.g., in bacteria residing inside macrophages ...

journal_title：Frontiers in microbiology

authors： Riva R,Korhonen TK,Meri S

更新日期：2015-02-06 00:00:00

abstract：:Human immunodeficiency virus type-1 (HIV-1) infection has resulted in the death of upward of 39 million people since being discovered in the early 1980s. A cure strategy for HIV-1 has eluded scientists, but gene editing technologies such as clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-asso...

journal_title：Frontiers in microbiology

authors： Sullivan NT,Allen AG,Atkins AJ,Chung CH,Dampier W,Nonnemacher MR,Wigdahl B

更新日期：2020-08-12 00:00:00

abstract：:Spatial patterns of marine Synechococcus diversity across ocean domains have been reported on extensively. However, much less is known of seasonal and multiannual patterns of change in Synechococcus community composition. Here we report on the genotypic diversity of Synechococcus populations in the Gulf of Aqaba, Nort...

journal_title：Frontiers in microbiology

authors： Post AF,Penno S,Zandbank K,Paytan A,Huse SM,Welch DM

更新日期：2011-06-20 00:00:00

abstract：:F-specific filamentous phage of Escherichia coli (Ff: f1, M13, or fd) are long thin filaments (860 nm × 6 nm). They have been a major workhorse in display technologies and bionanotechnology; however, some applications are limited by the high length-to-diameter ratio of Ff. Furthermore, use of functionalized Ff outside...

journal_title：Frontiers in microbiology

authors： Sattar S,Bennett NJ,Wen WX,Guthrie JM,Blackwell LF,Conway JF,Rakonjac J

更新日期：2015-04-20 00:00:00

abstract：:Soil carbon (C) storage is dependent upon the complex dynamics of fresh and native organic matter cycling, which are regulated by plant and soil-microbial activities. A fundamental challenge exists to link microbial biodiversity with plant-soil C cycling processes to elucidate the underlying mechanisms regulating soil...

journal_title：Frontiers in microbiology

authors： Thomson BC,Ostle NJ,McNamara NP,Oakley S,Whiteley AS,Bailey MJ,Griffiths RI

更新日期：2013-09-10 00:00:00

abstract：:Random transposon mutagenesis is a powerful technique used to generate libraries of genetic insertions in many different bacterial strains. Here we develop a system facilitating random transposon mutagenesis in a range of different Gram-negative bacterial strains, including Pectobacterium atrosepticum, Citrobacter rod...

journal_title：Frontiers in microbiology

authors： Monson R,Smith DS,Matilla MA,Roberts K,Richardson E,Drew A,Williamson N,Ramsay J,Welch M,Salmond GP

更新日期：2015-12-22 00:00:00

abstract：:Long-term dietary fatty acid intake is believed to induce changes in the human gut microbiome which might be associated with human health or obesity status; however, considerable debate remains regarding the most favorable ratios of fatty acids to optimize these processes. The objective of this sub-study of a double-b...

journal_title：Frontiers in microbiology

authors： Pu S,Khazanehei H,Jones PJ,Khafipour E

更新日期：2016-10-10 00:00:00

abstract：:Microorganisms play a significant role in the evolution and functioning of the eukaryotes with which they interact. Much of our understanding of beneficial host-microbe interactions stems from studying already established associations; we often infer the genotypic and environmental conditions that led to the existing ...

journal_title：Frontiers in microbiology

authors： Hoang KL,Morran LT,Gerardo NM

更新日期：2016-09-13 00:00:00

abstract：:The proton pump rhodopsin is widely found in marine bacteria and archaea, where it functions to capture light energy and convert it to ATP. While found in several lineages of dinoflagellates, this gene has not been studied in Prorocentrales species and whether it functionally tunes to light spectra and intensities as ...

journal_title：Frontiers in microbiology

authors： Shi X,Li L,Guo C,Lin X,Li M,Lin S

更新日期：2015-06-02 00:00:00

abstract：:Matrix-assisted Laser Desorption Ionization-Time of Flight Mass Spectroscopy (MALDI-TOF MS) has been used routinely over the past decade in clinical microbiology laboratories to rapidly characterize diverse microorganisms of medical importance both at the genus and species levels. Currently, there is keen interest in ...

journal_title：Frontiers in microbiology

authors： Tuohy JM,Mueller-Spitz SR,Albert CM,Scholz-Ng SE,Wall ME,Noutsios GT,Gutierrez AJ,Sandrin TR

更新日期：2018-10-15 00:00:00

abstract：:Monacolin K (MK) is a secondary metabolite of the Monascus species that can inhibit cholesterol synthesis. Functional red mold rice (FRMR) is the fermentation product of Monascus spp., which is rich in MK. FRMR is usually employed to regulate serum cholesterol, especially for hypercholesterolemic patients who refuse s...

journal_title：Frontiers in microbiology

authors： Yanli F,Xiang Y

更新日期：2020-11-25 00:00:00

abstract：:Salmonella enterica serovars have been isolated from Colombian broilers and broiler meat. The aim of this study was to investigate the diversity of ESBL/pAmpC genes in extended-spectrum cephalosporin resistant Salmonella enterica and the phylogeny of ESBL/pAmpC-carrying Salmonella using Whole Genome Sequencing (WGS). ...

journal_title：Frontiers in microbiology

authors： Castellanos LR,van der Graaf-van Bloois L,Donado-Godoy P,León M,Clavijo V,Arévalo A,Bernal JF,Mevius DJ,Wagenaar JA,Zomer A,Hordijk J

更新日期：2018-10-26 00:00:00

abstract：:Agricultural ponds have a great potential as a means of capture and storage of water for irrigation. However, pond topography (small size, shallow depth) leaves them susceptible to environmental, agricultural, and anthropogenic exposures that may influence microbial dynamics. Therefore, the aim of this project was to ...

journal_title：Frontiers in microbiology

authors： Chopyk J,Allard S,Nasko DJ,Bui A,Mongodin EF,Sapkota AR

更新日期：2018-04-24 00:00:00

abstract：:Dodecyl protocatechuate (dodecyl) is a derivative of protocatechuic acid (3,4-dihydroxybenzoic acid) that possesses anti-oxidant and antifungal properties. Nanostructured lipid systems (NLS) can potentiate the action of many antifungal agents, reducing the required dose and side effects by improving their activity. Th...

journal_title：Frontiers in microbiology

authors： Medina-Alarcón KP,Singulani JL,Voltan AR,Sardi JCO,Petrônio MS,Santos MB,Polaquini CR,Regasini LO,Bolzani VS,da Silva DHS,Chorilli M,Mendes-Giannini MJS,Fusco-Almeida AM

更新日期：2017-06-12 00:00:00

abstract：:Edaphic cyanobacteria and algae have been extensively studied in dryland soils because they play key roles in the formation of biological soil crusts and the stabilization of soil surfaces. Yet, in temperate agricultural crop soils, little is understood about the functional significance of indigenous photosynthetic mi...

journal_title：Frontiers in microbiology

authors： Crouzet O,Consentino L,Pétraud JP,Marrauld C,Aguer JP,Bureau S,Le Bourvellec C,Touloumet L,Bérard A

更新日期：2019-06-14 00:00:00