Improvement of a Rapid and Highly Sensitive Method for the Diagnosis of the Mitochondrial m.1555A>G Mutation Based on a Single-Stranded Tag Hybridization Chromatographic Printed-Array Strip.

Abstract:

: Aims: Pathogenic variants in mitochondrial DNA are known to be associated with sensorineural hearing loss (SNHL) and aminoglycoside-induced HL. Among them, the m.1555A>G mutation is the most common. Thus, a rapid and easy companion diagnostic method for this mutation would be desirable to prevent HL caused by aminoglycoside therapy. In this study, we report an improved protocol for the single-stranded tag hybridization chromatographic printed-array strip (STH-PAS) method for identifying the m.1555A>G mutation. Methods: To evaluate the accuracy of a novel diagnostic for the m.1555A>G mutation we analyzed 378 DNA samples with or without the m.1555A>G mutation, as determined by Invader assay, and calculated the sensitivity, specificity, and false negative and false positive ratios of this new method. Results: The newly developed protocol was robust; we, obtained the same results using multiple DNA concentrations, differing annealing temperatures, and different polymerase chain reaction thermal cyclers. The diagnostic sensitivity based on the STH-PAS method was 0.99, and the specificity was 1.00. The false negative and false positive ratios were 0 and 0.01, respectively. Conclusion: We improved the genotyping method for m.1555A>G mutations. This assays will be useful as a rapid companion diagnostic before aminoglycoside use.

authors

Isaka Y,Nishio SY,Hishinuma E,Hiratsuka M,Usami SI

doi

10.1089/gtmb.2020.0105

subject

Has Abstract

pub_date

2021-01-01 00:00:00

pages

79-83

issue

1

eissn

1945-0265

issn

1945-0257

journal_volume

25

pub_type

杂志文章,随机对照试验
  • Carrying the T Allele of the SNP rs574344, an eQTL of GSTM1, Contributes to Longevity in the Han Chinese Population.

    abstract:BACKGROUND:There has been recent recognition that the GSTM1 gene is associated with successful aging and longevity. It has been hypothesized that individuals with a GSTM1 deletion are at a greater risk for developing a plethora of diseases. This study was carried out to investigate the association between the rs574344 ...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2018.0178

    authors: Zhang Y,Zhang S,Yan D,Pan H,Liu B,Li T,Wang X,Cai W,Wang B

    更新日期:2019-01-01 00:00:00

  • The mitochondrial DNA variant 16189T>C is associated with coronary artery disease and myocardial infarction in Saudi Arabs.

    abstract::By virtue of the functional role of the mitochondrion in energy and reactive oxygen species production, mutations in mitochondrial DNA (mtDNA) are potential candidates for cardiovascular-related disorders. Further, the mtDNA is extremely polymorphic and several diagnostic single-nucleotide polymorphisms have been used...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2009.0095

    authors: Abu-Amero KK,Al-Boudari OM,Mousa A,Gonzalez AM,Larruga JM,Cabrera VM,Dzimiri N

    更新日期:2010-02-01 00:00:00

  • Association of androgen receptor, prostate-specific antigen, and CYP19 gene polymorphisms with prostate carcinoma and benign prostatic hyperplasia in a north Indian population.

    abstract::The genes involved in androgen pathway and metabolism have been reported to contribute considerably to prostate carcinoma (CaP) risk. The present study investigated the association of androgen receptor (AR), prostate-specific antigen (PSA or KLK3), and cytochrome P450 (CYP19) gene polymorphisms in CaP (n=105) and beni...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2011.0322

    authors: Soni A,Bansal A,Mishra AK,Batra J,Singh LC,Chakraborty A,Yadav DS,Mohanty NK,Saxena S

    更新日期:2012-08-01 00:00:00

  • Association of genetic polymorphism -670A>G in the Fas gene and serum markers AST platelet ratio index, AST/ALT with significant fibrosis and cirrhosis in chronic hepatitis C.

    abstract:AIM:This study was carried out to evaluate the association of genetic polymorphism -670A>G in the promoter of Fas gene as well as serum biomarkers aspartate aminotransferase (AST) platelet ratio index (APRI) and AST/alanine aminotransferase (ALT) with significant fibrosis and cirrhosis in chronic hepatitis C patients. ...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2011.0098

    authors: Deghady A,Abdou A,El-Neanaey WA,Diab I

    更新日期:2012-06-01 00:00:00

  • Assessment of individual susceptibility to baseline DNA and cytogenetic damage in a healthy Turkish population: evaluation with lifestyle factors.

    abstract:BACKGROUND:Cytogenetic biomarkers are most frequently used well-established endpoints in human population studies with their sensitivity for measuring exposure to genotoxic agents. They have an important role as early predictors of cancer risk. Identification of individual genotypes of metabolic gene polymorphisms help...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2012.0038

    authors: Kadioglu E,Kocabas NA,Demircigil GC,Coskun E,Ozcagli E,Durmaz E,Karahalil B,Burgaz S,Sardas S

    更新日期:2012-10-01 00:00:00

  • The Detection of Genetic Parameters for Prognostic Stratification of Neuroblastoma Using Multiplex Ligation-Dependent Probe Amplification Technique.

    abstract:BACKGROUND:Neuroblastoma (NB) is a neoplasm of the sympathetic nervous system and the most frequent extra cranial solid tumor of early childhood. These tumors display a wide range of clinical behavior and are characterized by complex chromosomal changes, some of which are associated with distinct clinical phenotypes. W...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 临床试验,杂志文章

    doi:10.1089/gtmb.2015.0165

    authors: Tumer S,Altungoz O,Bagci O,Olgun HN

    更新日期:2016-02-01 00:00:00

  • Association of Leukocyte Telomere Length and Mitochondrial DNA Copy Number in Children from Salamanca, Mexico.

    abstract:AIM:The purpose of this study was to determine if there is a correlation between telomere length (TL) and mitochondrial DNA copy number (mtDNAcn) in children. METHODS:Leukocyte TL and mtDNAcn were measured by real-time PCR in 98 Mexican children 6-12 years of age from Salamanca, México. RESULTS:A positive association...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2016.0176

    authors: Alegría-Torres JA,Velázquez-Villafaña M,López-Gutiérrez JM,Chagoyán-Martínez MM,Rocha-Amador DO,Costilla-Salazar R,García-Torres L

    更新日期:2016-11-01 00:00:00

  • Different Contributions of CDKAL1, KIF21B, and LRRK2/MUC19 Polymorphisms to SAPHO Syndrome, Rheumatoid Arthritis, Ankylosing Spondylitis, and Seronegative Spondyloarthropathy.

    abstract:OBJECTIVES:Synovitis, acne, pustulosis, hyperostosis, and osteitis (SAPHO) syndrome, rheumatoid arthritis (RA), ankylosing spondylitis (AS), and seronegative spondyloarthropathy (SPA) are autoimmune diseases of unknown etiology, which share some clinical manifestations in common. Previous family-based investigations su...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2016.0112

    authors: Li N,Ma J,Li K,Guo C,Ming L

    更新日期:2017-02-01 00:00:00

  • CTLA-4 +49 G/A Polymorphism Confers Autoimmune Disease Risk: An Updated Meta-Analysis.

    abstract:BACKGROUND:Cytotoxic T lymphocyte antigen-4 (CTLA-4) plays a pivotal role in immune homeostasis. Dysregulated expression of CTLA-4 leads to many autoimmune diseases, including rheumatoid arthritis, systemic lupus erythematosus, and type 1 diabetes (T1D). There has been a controversial association between the CTLA-4 +49...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章,meta分析

    doi:10.1089/gtmb.2016.0335

    authors: Wang K,Zhu Q,Lu Y,Lu H,Zhang F,Wang X,Fan Y

    更新日期:2017-04-01 00:00:00

  • Screening of AIP Gene Variations in a Cohort of Turkish Patients with Young-Onset Sporadic Hormone-Secreting Pituitary Adenomas.

    abstract:: Aims: Aryl hydrocarbon receptor-interacting protein (AIP) gene mutations have long been associated with apparently sporadic pituitary adenomas (PAs) with a prevalence range of 0-12%. The aim of this study was to evaluate the frequency of germline AIP variations in a large ...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2018.0133

    authors: Tuncer FN,Çiftçi Doğanşen S,Serbest E,Tanrıkulu S,Ekici Y,Bilgiç B,Yarman S

    更新日期:2018-12-01 00:00:00

  • Methylenetetrahydrofolate reductase polymorphism C677T is a protective factor for pediatric acute lymphoblastic leukemia in the Chinese population: a meta-analysis.

    abstract::Two polymorphisms in the methylenetetrahydrofolate reductase (MTHFR) gene, C677T and A1298C, were hypothesized to decrease the risk of acute lymphoblastic leukemia (ALL). Studies examining the associations between these two polymorphisms and ALL susceptibility drew inconsistent results. To obtain a reliable conclusion...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章,meta分析

    doi:10.1089/gtmb.2012.0184

    authors: Wang H,Meng L,Zhao L,Wang J,Liu X,Mi W

    更新日期:2012-12-01 00:00:00

  • Identification of novel mutations in LMNA associated with familial forms of dilated cardiomyopathy.

    abstract::The lamin A/C proteins are major structural and functional components of the nuclear lamina. Mutations identified in LMNA encoding lamin A/C belong to the most frequently described causes for inherited forms of dilated cardiomyopathy (DCM). To elucidate the clinical characteristics of LMNA mutation carriers we perform...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2011.0214

    authors: Stallmeyer B,Koopmann M,Schulze-Bahr E

    更新日期:2012-06-01 00:00:00

  • Associations of interleukin-4 receptor gene polymorphisms (Q551R, I50V) with rheumatoid arthritis: evidence from a meta-analysis.

    abstract:BACKGROUND AND AIMS:Published data on the associations between interleukin-4 receptor (IL-4R) gene polymorphisms (Q551R, I50V) and rheumatoid arthritis (RA) risk are controversial. To quantitatively evaluate the relationships, a meta-analysis was performed. METHODS:Studies were identified from the databases of PubMed,...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章,meta分析,评审

    doi:10.1089/gtmb.2013.0186

    authors: Peng H,Wang W,Zhou M,Liu CY,Li R,Wen PF,Qiu LJ,Pan HF,Ye DQ

    更新日期:2013-10-01 00:00:00

  • Association of IL-10-1082A/G Polymorphism with Ischemic Stroke: Evidence from a Case-Control Study to an Updated Meta-Analysis.

    abstract:BACKGROUND AND AIMS:Interleukin-10 (IL-10) plays a vital part in the pathophysiology of vascular inflammation. Several studies have investigated the potential association between the IL-10-1082A/G polymorphism and the risk of ischemic stroke where the inflammatory process is involved, but the conclusions have been inco...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章,meta分析

    doi:10.1089/gtmb.2016.0409

    authors: Liu X,Li Q,Zhu R,He Z

    更新日期:2017-06-01 00:00:00

  • The rs251684 Variant of PLA2G4C Is Associated with Autism Spectrum Disorder in the Northeast Han Chinese Population.

    abstract:AIM:To investigate the association between autism spectrum disorder (ASD) and the phospholipase A2 group IVC (PLA2G4C) and phospholipase A2 group XIIA (PLA2G12A) polymorphisms in the Northeast Han Chinese population. MATERIALS AND METHODS:A total of 68 family trios (children diagnosed with ASD and their unaffected par...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2016.0195

    authors: Liu S,Qiu S,Lu Y,Kanu JS,Li R,Bai Y,Zhu X,Lei J,Xu N,Yu Y,Liu Y,Jiang H

    更新日期:2016-12-01 00:00:00

  • Association between genetic variants of DNA repair genes and coronary artery disease.

    abstract::Polymorphisms in DNA repair genes may be associated with differences in the repair efficiency of DNA damage and may influence an individual's risk of atherosclerosis. Genetic research on coronary artery disease (CAD) has traditionally focused on investigation aimed at identifying disease-susceptibility genes. The aim ...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2012.0383

    authors: Gokkusu C,Cakmakoglu B,Dasdemir S,Tulubas F,Elitok A,Tamer S,Seckin S,Umman B

    更新日期:2013-04-01 00:00:00

  • A one-step prescreening for point mutations and large rearrangement in BRCA1 and BRCA2 genes using quantitative polymerase chain reaction and high-resolution melting curve analysis.

    abstract::High-resolution melting (HRM) of DNA is a versatile method for mutation scanning that monitors the fluorescence of double-strand DNA with saturating dye. Performing HRM on a real-time thermocycler enables semiquantitative analysis (quantitative polymerase chain reaction, qPCR) to be associated to HRM analysis for dete...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2009.0183

    authors: Coulet F,Pires F,Rouleau E,Lefol C,Martin S,Colas C,Cohen-Haguenauer O,Giurgea I,Fajac A,Noguès C,Demange L,Hardouin A,Lidereau R,Soubrier F

    更新日期:2010-10-01 00:00:00

  • Association between polymorphisms in MTHFR and APOA5 and metabolic syndrome in the Greek population.

    abstract::Impaired energy homeostasis and low-grade inflammation have been related to components of the metabolic syndrome (MetS) such as dyslipidemia, obesity, and insulin resistance. Single-nucleotide polymorphisms in the genes encoding for IL-6 (g.-634G>C; c.174G>C), TNFα (g.-308G>A), methylenetetrahydrofolate reductase (MTH...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2010.0256

    authors: Vasilopoulos Y,Sarafidou T,Bagiatis V,Skriapa L,Goutzelas Y,Pervanidou P,Lazopoulou N,Chrousos GP,Mamuris Z

    更新日期:2011-09-01 00:00:00

  • Genetic polymorphisms of platelet receptors in patients with acute myocardial infarction and resistance to antiplatelet therapy.

    abstract:METHODS:The studied group comprises 124 patients with acute myocardial infarction on dual antiplatelet therapy with acetylsalicylic acid (ASA) and thienopyridines. Antiplatelet therapy was monitored by platelet-rich plasma light transmittance aggregometry (LTA) using the APACT 4004 analyzer (Helena Laboratories) and by...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2014.0077

    authors: Ulehlova J,Slavik L,Kucerova J,Krcova V,Vaclavik J,Indrak K

    更新日期:2014-09-01 00:00:00

  • Filaggrin mutations in a Western siberian population and their association with atopic dermatitis in children.

    abstract::We determined the frequencies of null mutations of the FLG gene--2282del4, R501X, R2447X, 3702delG, S3247X, and the 12-repeat allele (rs12730241)--among 460 Caucasians of the city of Novosibirsk, Russia. The frequency was 17.7% for rs12730241, 2.73% for 2282del4, 0.22% for R501X, 0.33% for R2447X, and 0% for 3702delG ...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章,随机对照试验

    doi:10.1089/gtmb.2014.0247

    authors: Komova EG,Shintyapina AB,Makarova SI,Ivanov MK,Chekryga EA,Kaznacheeva LF,Vavilin VA

    更新日期:2014-12-01 00:00:00

  • Toll-like receptor 6 and connective tissue growth factor are significantly upregulated in mitomycin-C-treated urothelial carcinoma cells under hydrostatic pressure stimulation.

    abstract:BACKGROUND:Urothelial carcinoma (UC) is the most common histologic subtype of bladder cancer. The administration of mitomycin C (MMC) into the bladder after transurethral resection of the bladder tumor (TURBT) is a common treatment strategy for preventing recurrence after surgery. We previously applied hydrostatic pres...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2013.0443

    authors: Chen SK,Chung CA,Cheng YC,Huang CJ,Chen WY,Ruaan RC,Li C,Tsao CW,Hu WW,Chien CC

    更新日期:2014-06-01 00:00:00

  • A Meta-analysis on the Effect of Ulinastatin on Serum Levels of C-Reactive Protein, Interleukin 6, and Tumor Necrosis Factor Alpha in Asian Patients with Acute Pancreatitis.

    abstract:OBJECTIVES:We aimed to investigate the influence of ulinastatin (UTI) on the serum levels of C-reactive protein (CRP), interleukin 6 (IL-6), and tumor necrosis factor alpha (TNF-α) in Asian patients with acute pancreatitis (AP) by performance of a meta-analysis. METHODS:Two investigators independently searched 11 data...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章,meta分析

    doi:10.1089/gtmb.2015.0192

    authors: Zhang C,Wang Y,Fu W,Zhang W,Wang T,Qin H

    更新日期:2016-03-01 00:00:00

  • Screening for AZFc partial deletions in Dravidian men with nonobstructive azoospermia and oligozoospermia.

    abstract:CONTEXT:Dravidians are the predominant population residing in South India with a diverse genetic structure. Considering various genetic discoveries taking place today, it is evident that deletions in the AZFc region are the most common cause of severe spermatogenic failure (SSF) in various populations studied. However,...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2014.0251

    authors: Vijesh VV,Nambiar V,Mohammed SI,Sukumaran S,Suganthi R

    更新日期:2015-03-01 00:00:00

  • Identification of a Novel Nonsense ASPM Mutation in a Large Consanguineous Pakistani Family Using Targeted Next-Generation Sequencing.

    abstract:AIMS:To identify the pathogenic mutation underlying microcephaly primary hereditary (MCPH) in a large consanguineous Pakistani family. METHODS:A five-generation family with an autosomal recessive transmission of MCPH was recruited. Targeted next-generation DNA sequencing was carried out to analyze the genomic DNA samp...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2017.0229

    authors: Khan A,Wang R,Han S,Ahmad W,Zhang X

    更新日期:2018-03-01 00:00:00

  • Serum Level and Gene Expression of Interleukin-15 Do Not Correlate with Villous Atrophy in Celiac Disease Patients.

    abstract:: Background and Aims: Interleukin-15 (IL-15) is a key player in the pathogenesis of celiac disease (CD). We investigated the functional role of IL-15 in the process of epithelial cell phenotypic modification at different stages of CD. Materials and ...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2019.0265

    authors: Aghamohamadi E,Kokhaei P,Rostami-Nejad M,Pak F,Rostami K,Moradi A,Pourhoseingholi MA,Chaleshi V,Masotti A,Zali MR

    更新日期:2020-08-01 00:00:00

  • STAT4 is not associated with type 2 diabetes in the genetically homogeneous population of Crete.

    abstract::Current classifications of diabetes distinguish between type 1 diabetes (T1D) and type 2 diabetes (T2D). However, recent evidence highlights overlap between T1D and T2D. In a recent study, we have suggested for the first time that STAT4 gene polymorphism is associated with increased risk for the development of T1D in ...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2008.0128

    authors: Kofteridis D,Krasoudaki E,Kavousanaki M,Zervou MI,Panierakis C,Boumpas DT,Goulielmos GN

    更新日期:2009-04-01 00:00:00

  • Validation of Next-Generation Sequencer for 24-Chromosome Aneuploidy Screening in Human Embryos.

    abstract:BACKGROUND:Next-Generation Sequencing (NGS) is the latest approach for preimplantation genetic diagnoses (PGD). AIM:The purpose of this study was to standardize and validate an NGS method for comprehensive chromosome screening and to investigate its applicability to PGD. METHODS:Embryo biopsy, whole-genome amplificat...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2017.0108

    authors: Sachdeva K,Discutido R,Albuz F,Almekosh R,Peramo B

    更新日期:2017-11-01 00:00:00

  • Association of interleukin-6 -174 G>C promoter polymorphism with increased risk of type 2 diabetes mellitus patients with diabetic nephropathy in Turkey.

    abstract:OBJECTIVE:Diabetic nephropathy (DN) is a serious complication of diabetes mellitus. We aimed to evaluate the interleukin (IL)-6 gene polymorphisms in type 2 DN and control subjects. MATERIALS AND METHODS:The patients selected from the Department of Endocrinology and Metabolism Diseases included 43 type 2 diabetes mell...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2013.0357

    authors: Karadeniz M,Erdogan M,Berdeli A,Yilmaz C

    更新日期:2014-01-01 00:00:00

  • Association between IL-6-174G/C polymorphism and risk of multiple sclerosis: a meta-analysis.

    abstract:OBJECTIVE:Interleukin-6 (IL-6) is a pleiotropic cytokine and important mediator of many inflammatory processes, which might affect susceptibility to multiple sclerosis (MS). The aim of this study was to assess the effect of IL-6-174G/C polymorphism on the risk of MS using a meta-analysis. MATERIALS AND METHODS:The Pub...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章,meta分析,评审

    doi:10.1089/gtmb.2013.0387

    authors: Hu S,Chen Y,Sun XD,Li FJ,Shu QF,Liu XL,Jiang SF

    更新日期:2014-02-01 00:00:00

  • Synergistic cytogenetic and antineoplastic effects by the combined action of esteric steroidal derivatives of nitrogen mustards.

    abstract::We studied the effect of five newly synthesized steroidal derivatives of nitrogen mustards. These derivatives have as alkylators either P-N, N-bis(2-chloroethyl)aminophenyl-butyrate (CHL) or P-N, N-bis(2-chloroethyl)aminophenyl-acetate (PHE) groups esterified with different modified steroidal nuclei. We examined them ...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2011.0234

    authors: Mourelatos C,Nikolaropoulos S,Fousteris M,Pairas G,Argyraki M,Kareli D,Dafa E,Mourelatos D,Lialiaris T

    更新日期:2012-06-01 00:00:00