Validation of Next-Generation Sequencer for 24-Chromosome Aneuploidy Screening in Human Embryos.

Abstract:

BACKGROUND:Next-Generation Sequencing (NGS) is the latest approach for preimplantation genetic diagnoses (PGD). AIM:The purpose of this study was to standardize and validate an NGS method for comprehensive chromosome screening and to investigate its applicability to PGD. METHODS:Embryo biopsy, whole-genome amplification, array comparative genomic hybridization (aCGH), and semiconductor sequencing were employed. RESULTS:A total of 204 whole-genome-amplified products were tested with an NGS-based protocol, from which 100 samples were used for standardization and to evaluate the quality of the results produced by this new technique. The remaining 104 samples tested by NGS were previously analyzed by using the aCGH protocol to determine the sensitivity and specificity of this new technique. In total, 4896 chromosomes were assessed, out of which 196 carried a copy number imbalance. NGS sensitivity and specificity for calling aneuploidy was 100%. CONCLUSION:This is the first study reporting preclinical validation and accuracy assessment of the Ion Torrent Personal Genome Machine (PGM) NGS-based comprehensive chromosome screening method using blastomeres and blastocysts. The NGS proved to be a robust methodology and is ready for clinical application in reproductive medicine, with the major advantage of low cost and enhanced precision when compared with other technologies used for comprehensive chromosome screening.

authors

Sachdeva K,Discutido R,Albuz F,Almekosh R,Peramo B

doi

10.1089/gtmb.2017.0108

subject

Has Abstract

pub_date

2017-11-01 00:00:00

pages

674-680

issue

11

eissn

1945-0265

issn

1945-0257

journal_volume

21

pub_type

杂志文章
  • Ectonucleotide pyrophosphatase/phosphodiesterase 1 K173Q polymorphism is associated with diabetic nephropathy in the Taiwanese population.

    abstract::Diabetic nephropathy is the leading cause of end-stage renal disease in the world. The cause of diabetic nephropathy seems to be multifactorial, and about one-third of patients with diabetes eventually develop this complication. The gene encoding ectonucleotide pyrophosphatase/phosphodiesterase 1 (ENPP1) is a candidat...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2010.0148

    authors: Lin CC,Wu CT,Wu LS

    更新日期:2011-04-01 00:00:00

  • The Impact of Vitamin D Receptor Gene Polymorphisms on the Susceptibility of Diabetic Vascular Complications: A Meta-Analysis.

    abstract:: Background: To determine whether vitamin D receptor (VDR) gene polymorphisms are correlated with susceptibility to diabetic vascular complications. Methods: We included all eligible studies, and used Stata12.0 to calculate the ...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章,meta分析

    doi:10.1089/gtmb.2019.0037

    authors: Song N,Yang S,Wang YY,Tang SQ,Zhu YQ,Dai Q,Zhang H

    更新日期:2019-08-01 00:00:00

  • Genetic Polymorphisms of Cytochrome P450 Enzymes and Transport Proteins in a Russian Population and Three Ethnic Groups of Dagestan.

    abstract:AIM:The objective of this study was to investigate the prevalence of polymorphic markers of the CYP2C19, CYP2C9, CYP2D6, SLCO1B1, and ABCB1 genes among the three ethnic groups in Dagestan and compare it with the carrier frequency of these markers among the Russian population living in Moscow. METHODS:The study involve...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2017.0036

    authors: Mirzaev KB,Sychev DA,Ryzhikova KA,Konova OD,Mammaev SN,Gafurov DM,Shuev GN,Grishina EA,Sozaeva ZA

    更新日期:2017-12-01 00:00:00

  • Association between IL-6-174G/C polymorphism and risk of multiple sclerosis: a meta-analysis.

    abstract:OBJECTIVE:Interleukin-6 (IL-6) is a pleiotropic cytokine and important mediator of many inflammatory processes, which might affect susceptibility to multiple sclerosis (MS). The aim of this study was to assess the effect of IL-6-174G/C polymorphism on the risk of MS using a meta-analysis. MATERIALS AND METHODS:The Pub...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章,meta分析,评审

    doi:10.1089/gtmb.2013.0387

    authors: Hu S,Chen Y,Sun XD,Li FJ,Shu QF,Liu XL,Jiang SF

    更新日期:2014-02-01 00:00:00

  • Design of a Targeted Sequencing Assay to Detect Rare Mutations in Circulating Tumor DNA.

    abstract:BACKGROUND:Qualitative and quantitative detection of circulating tumor DNA (ctDNA) is a liquid biopsy technology used for early cancer diagnosis. However, the plasma ctDNA content is extremely low, so it is difficult to detect somatic mutations of tumors using conventional sequencing methods. Target region sequencing (...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2018.0173

    authors: Chen J,Chen J,He F,Huang Y,Lu S,Fan H,Wang M,Xu R

    更新日期:2019-04-01 00:00:00

  • Evaluation of the contribution of renin angiotensin system polymorphisms to the risk of coronary artery disease among Tunisians.

    abstract::Recent studies have identified genetic markers that may directly influence the risk of the coronary artery disease (CAD), in particular the renin angiotensin system genes. Since there are no existing data for the Tunisian population, we investigated the association between these polymorphisms (angiotensin-converting e...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2010.0070

    authors: Abboud N,Ghazouani L,Kaabi B,Ben-Hadj-Khalifa S,Addad F,Marwen M,Almawi WY,Mahjoub T

    更新日期:2010-10-01 00:00:00

  • Association of Single Nucleotide Polymorphisms of the IL-6, IL-10, and TNF-α Genes with Susceptibility to Gestational Diabetes Mellitus.

    abstract:: Objective: To investigate any associations between the single nucleotide polymorphisms (SNPs) at the interleukin-6 (IL-6) rs1800796, interleukin-10 (IL-10) rs1800896, and the tumor necrosis factor-alpha (TNF-α) rs1800629 loci with gestational diabetes mellitus (GDM) suscep...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2020.0069

    authors: Wei Q,Chen X,Chen H

    更新日期:2020-07-01 00:00:00

  • The mitochondrial DNA variant 16189T>C is associated with coronary artery disease and myocardial infarction in Saudi Arabs.

    abstract::By virtue of the functional role of the mitochondrion in energy and reactive oxygen species production, mutations in mitochondrial DNA (mtDNA) are potential candidates for cardiovascular-related disorders. Further, the mtDNA is extremely polymorphic and several diagnostic single-nucleotide polymorphisms have been used...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2009.0095

    authors: Abu-Amero KK,Al-Boudari OM,Mousa A,Gonzalez AM,Larruga JM,Cabrera VM,Dzimiri N

    更新日期:2010-02-01 00:00:00

  • Rapid identification of common β-thalassemia mutations in the Chinese population using duplex or triplex amplicon genotyping by high-resolution melting analysis.

    abstract::β-Thalassemia is one of the most prevalent inherited diseases in China. To date, over 20 β-thalassemia mutations have been identified in the Chinese population, and four mutations [CD41-42 (-4 bp), IVS-2-654C→T, CD17A→T, and -28A→G] account for approximately 90% of the cases. Therefore, the exploration of simple, reli...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2010.0048

    authors: He X,Sheng M,Xu M,Xiong C,Ren Z

    更新日期:2010-12-01 00:00:00

  • Significance of genome-wide association studies in molecular anthropology.

    abstract::The successful advent of a genome-wide approach in association studies raises the hopes of human geneticists for solving a genetic maze of complex traits especially the disorders. This approach, which is replete with the application of cutting-edge technology and supported by big science projects (like Human Genome Pr...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章,评审

    doi:10.1089/gtmb.2009.0072

    authors: Gupta V,Khadgawat R,Sachdeva MP

    更新日期:2009-12-01 00:00:00

  • Recurrent and private MYO15A mutations are associated with deafness in the Turkish population.

    abstract::The identities and frequencies of MYO15A mutations associated with hearing loss in different populations remained largely unknown. We screened the MYO15A gene for mutations in 104 unrelated multiplex and consanguineous Turkish families with autosomal recessive nonsyndromic sensorineural hearing loss using autozygosity...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2010.0039

    authors: Cengiz FB,Duman D,Sirmaci A,Tokgöz-Yilmaz S,Erbek S,Oztürkmen-Akay H,Incesulu A,Edwards YJ,Ozdag H,Liu XZ,Tekin M

    更新日期:2010-08-01 00:00:00

  • Dual-Targeting of miR-124-3p and ABCC4 Promotes Sensitivity to Adriamycin in Breast Cancer Cells.

    abstract:AIMS:Increasing evidence links the abnormal expression of microRNAs and ATP-binding cassette subfamily C member 4 (ABCC4) with tumor development and progression, as well as with chemoresistance. Our aims were to determine the therapeutic potential of targeting both miR-124-3p and ABCC4 in breast cancer cells and to det...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2018.0259

    authors: Hu D,Li M,Su J,Miao K,Qiu X

    更新日期:2019-03-01 00:00:00

  • Five common haplotype-tagging variants of adiponectin (ADIPOQ) and cancer susceptibility: a meta-analysis.

    abstract:AIMS:The relationship between common haplotype-tagging polymorphisms (rs266729 [11365C>G], rs822395 [-4034A>C], rs822396 [-3964A>G], rs2241766 [45T>G], and rs1501299 [276G>T]) in the ADIPOQ gene and cancer risk has been investigated in different ethnic groups; however, these studies have yielded contradictory results. ...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章,meta分析

    doi:10.1089/gtmb.2013.0493

    authors: Li Q,Ma Y,Sang W,Cui W,Li X,Liu X,Zhang W

    更新日期:2014-06-01 00:00:00

  • Synergistic Association of Genetic Variants with Environmental Risk Factors in Susceptibility to Essential Hypertension.

    abstract:AIMS:Essential hypertension (EH) is a disease in which both environment and genes have an important role. This study was designed to identify the interaction model between genetic variants and environmental risk factors that most highly potentiates EH development. METHODS:We performed a case-control study with 1641 pa...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2017.0048

    authors: Sousa AC,Mendonça MI,Pereira A,Gouveia S,Freitas AI,Guerra G,Rodrigues M,Henriques E,Freitas S,Borges S,Pereira D,Brehm A,Palma Dos Reis R

    更新日期:2017-10-01 00:00:00

  • Exploration of the Serum Interleukin-17 and Interleukin-27 Expression Levels in Children with Bronchial Asthma and Their Correlation with Indicators of Lung Function.

    abstract:: Aims: To investigate the expression levels of serum interleukin-17 (IL-17) and interleukin-27 (IL-27) in children with bronchial asthma and to correlate these expression levels with lung function indicators. Methods: A total of...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2019.0155

    authors: Liu Z,Niu C,Ying L,Zhang Q,Long M,Fu Z

    更新日期:2020-01-01 00:00:00

  • Genotyping the GGGCGG tandem repeat promoter polymorphism in the 5-lipoxygenase enzyme gene (ALOX5) by pyrosequencing assay.

    abstract:AIMS:Efficient genotyping methods for many biologically significant repeat genetic polymorphisms, particularly in GC-rich regions of the genome, are limited. In particular, a short tandem repeat polymorphism [GGCGGG] in the promoter region of ALOX5 has been implicated as an important marker for inflammatory diseases. W...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2008.0103

    authors: Schentrup AM,Allayee H,Lima JJ,Johnson JA,Langaee TY

    更新日期:2009-06-01 00:00:00

  • DEFB4A Promoter Polymorphism Is Associated with Chronic Periodontitis: A Case-Control Study.

    abstract:: Background: Human β-defensin-2 is an antimicrobial peptide with antibiotic properties secreted by the oral cavity to protect the host against microbial attack. The inter-individual differences in defensin expression profiles due to genetic variation might be partly respons...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2019.0218

    authors: Kurt-Bayrakdar S,Ozturk A,Kara N

    更新日期:2020-03-01 00:00:00

  • Genetic Polymorphisms of miR-149 Associated with Susceptibility to Both Pulmonary and Extrapulmonary Tuberculosis.

    abstract:: Background: Single nucleotide polymorphisms (SNPs) within precursor microRNAs (miRNAs) can affect the expression of the miRNAs and may be involved in the pathogenesis of pulmonary tuberculosis (PTB) and extrapulmonary tuberculosis (EPTB). Aims: ...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2019.0003

    authors: Chen WW,Wan B,Zhang R,Cao W,Liang L,Zhao YL,Chen J,Yue J

    更新日期:2019-07-01 00:00:00

  • Genetic epidemiology of cancer predisposition DNA repair genes is probably related with ancestral surviving under adverse environmental conditions.

    abstract:AIMS:Surviving under a stressful environment may be a real challenge. Individuals (and their offspring) with accumulated genetic variation in their DNA repair genes may have a higher probability to survive under these conditions. A partially unstable DNA repair system raises the mutagenesis rate and the probability for...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2014.0053

    authors: Voskarides K

    更新日期:2014-08-01 00:00:00

  • Association of -2518A>G promoter polymorphism in the monocyte chemoattractant protein-1 (MCP-1) gene with type 2 diabetes and coronary artery disease.

    abstract:AIMS:Inflammatory markers play an important role in the development of diseases related to metabolic syndrome, such as type 2 diabetes (T2D) and coronary artery disease (CAD). The present study evaluates the association of -2518A>G polymorphism in the monocyte chemoattractant protein-1 (MCP-1) gene with T2D and CAD. R...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 临床试验,杂志文章

    doi:10.1089/gtmb.2013.0227

    authors: Kaur R,Matharoo K,Arora P,Bhanwer AJ

    更新日期:2013-10-01 00:00:00

  • GJB2 mutations in patients with nonsyndromic hearing loss from Croatia.

    abstract::The aim of the study was to determine (1) the frequency and type of mutations in the coding region of the GJB2 gene (sequencing), (2) the frequency of splice site mutation IVS1 + 1G > A in the GJB2 gene (multiplex ligation-dependent probe amplification analysis), (3) possible copy number changes in the GJB2, GJB3, GJB...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2009.0073

    authors: Sansović I,Knezević J,Musani V,Seeman P,Barisić I,Pavelić J

    更新日期:2009-10-01 00:00:00

  • Applications of Next-Generation Sequencing in Neoantigen Prediction and Cancer Vaccine Development.

    abstract::Next-generation sequencing has changed the face of cancer immunotherapy research by making tumor-specific cancer vaccines a reality. Whole exome sequencing and RNA sequencing combined with bioinformatic pipelines allow the prediction of neoantigen targets for cancer vaccines. In this review, we discuss the preclinical...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章,评审

    doi:10.1089/gtmb.2018.0211

    authors: Lancaster EM,Jablons D,Kratz JR

    更新日期:2020-02-01 00:00:00

  • A novel splice site and two known mutations of androgen receptor gene in sex-reversed XY phenotype.

    abstract::Molecular characterization of 27 cytogenetically confirmed Indian XY females was attempted by screening selected regions of candidate genes namely SRY (HMG box) and the ligand-binding domain of androgen receptor (AR) (Exons 5-8). Three of the index cases showed sequence variations in exons of the AR gene: a deletion m...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 临床试验,杂志文章,评审

    doi:10.1089/gtmb.2011.0292

    authors: Vasu VR,Saranya B,Jayashankar M,Munirajan AK,Santhiya ST

    更新日期:2012-07-01 00:00:00

  • Genetic polymorphisms of platelet receptors in patients with acute myocardial infarction and resistance to antiplatelet therapy.

    abstract:METHODS:The studied group comprises 124 patients with acute myocardial infarction on dual antiplatelet therapy with acetylsalicylic acid (ASA) and thienopyridines. Antiplatelet therapy was monitored by platelet-rich plasma light transmittance aggregometry (LTA) using the APACT 4004 analyzer (Helena Laboratories) and by...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2014.0077

    authors: Ulehlova J,Slavik L,Kucerova J,Krcova V,Vaclavik J,Indrak K

    更新日期:2014-09-01 00:00:00

  • Endothelial lipase-384A/C polymorphism is associated with acute coronary syndrome and lipid status in elderly Uygur patients in Xinjiang.

    abstract:OBJECTIVE:To explore the relationship between the endothelial lipase (EL) gene promoter -384A/C polymorphism and acute coronary syndrome (ACS) and lipid status in elderly Uygur patients in Xinjiang. METHODS:The polymerase chain reaction-restriction fragment length polymorphism method was used to detect the EL gene pro...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2014.0195

    authors: Huang D,Xie X,Ma YT,Huang Y,Ma X

    更新日期:2014-11-01 00:00:00

  • A Comparative Study of ARHI Imprinted Gene Detection and Fine-Needle Aspiration Cytology in the Differential Diagnosis of Benign and Malignant Thyroid Nodules.

    abstract:: Aims: To compare fine-needle aspiration cytology (FNAC) with imprinted gene detection in the differential diagnosis of benign and malignant thyroid nodules. Methods: A total of 34 patients (35 cases of thyroid nodules) were exa...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2019.0028

    authors: Zou D,Wu C,Miao J,Shao Q,Huang W,Huang J,Wu G,Zhang Q

    更新日期:2019-09-01 00:00:00

  • Allelic dropout in the ENG gene, affecting the results of genetic testing in hereditary hemorrhagic telangiectasia.

    abstract:BACKGROUND:Hereditary hemorrhagic telangiectasia (HHT) is an autosomal-dominant vascular disorder with three disease-causing genes identified to date: ENG, ACVRL1, and SMAD4. We report an HHT patient with allelic dropout that on routine sequence analysis for a known mutation in the family (c.817-3T>G in ENG) initially ...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2012.0230

    authors: Tørring PM,Kjeldsen AD,Ousager LB,Brasch-Andersen C,Brusgaard K

    更新日期:2012-12-01 00:00:00

  • Relationship between leptin G2548A and leptin receptor Q223R gene polymorphisms and obesity and metabolic syndrome risk in Tunisian volunteers.

    abstract::Leptin is a key hormone of weight regulation that modulates food intake. Since the elaboration of the leptin action mechanism, several studies tried to establish the relationship between obesity and the common polymorphisms of leptin (LEP) and leptin receptor (LEPR) genes, but results were controversial. We studied th...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 临床试验,杂志文章

    doi:10.1089/gtmb.2011.0324

    authors: Boumaiza I,Omezzine A,Rejeb J,Rebhi L,Ouedrani A,Ben Rejeb N,Nabli N,Ben Abdelaziz A,Bouslama A

    更新日期:2012-07-01 00:00:00

  • Genetic and Functional Analyses of Two Missense Mutations in the Transcription Factor FOXL2 in Two Chinese Families with Blepharophimosis-Ptosis-Epicanthus Inversus Syndrome.

    abstract:BACKGROUND:Blepharophimosis-ptosis-epicanthus inversus syndrome (BPES) is a rare autosomal-dominant inherited disease. This study was carried out to investigate the genetic and functional changes within the FOXL2 gene in two Chinese families with BPES. MATERIALS AND METHODS:DNA was extracted from the peripheral blood ...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2018.0064

    authors: Li H,Gu Y

    更新日期:2018-10-01 00:00:00

  • Association of genetic polymorphism -670A>G in the Fas gene and serum markers AST platelet ratio index, AST/ALT with significant fibrosis and cirrhosis in chronic hepatitis C.

    abstract:AIM:This study was carried out to evaluate the association of genetic polymorphism -670A>G in the promoter of Fas gene as well as serum biomarkers aspartate aminotransferase (AST) platelet ratio index (APRI) and AST/alanine aminotransferase (ALT) with significant fibrosis and cirrhosis in chronic hepatitis C patients. ...

    journal_title:Genetic testing and molecular biomarkers

    pub_type: 杂志文章

    doi:10.1089/gtmb.2011.0098

    authors: Deghady A,Abdou A,El-Neanaey WA,Diab I

    更新日期:2012-06-01 00:00:00