Ice formation and growth shape bacterial community structure in Baltic Sea drift ice.

Abstract:

:Drift ice, open water and under-ice water bacterial communities covering several developmental stages from open water to thick ice were studied in the northern Baltic Sea. The bacterial communities were assessed with 16S rRNA gene terminal-restriction fragment length polymorphism and cloning, together with bacterial abundance and production measurements. In the early stages, open water and pancake ice were dominated by Alphaproteobacteria and Actinobacteria, which are common bacterial groups in Baltic Sea wintertime surface waters. The pancake ice bacterial communities were similar to the open-water communities, suggesting that the parent water determines the sea-ice bacterial community in the early stages of sea-ice formation. In consolidated young and thick ice, the bacterial communities were significantly different from water bacterial communities as well as from each other, indicating community development in Baltic Sea drift ice along with ice-type changes. The thick ice was dominated by typical sea-ice genera from classes Flavobacteria and Gammaproteobacteria, similar to those in polar sea-ice bacterial communities. Since the thick ice bacterial community was remarkably different from that of the parent seawater, results indicate that thick ice bacterial communities were recruited from the rarer members of the seawater bacterial community.

journal_name

FEMS Microbiol Ecol

authors

Eronen-Rasimus E,Lyra C,Rintala JM,Jürgens K,Ikonen V,Kaartokallio H

doi

10.1093/femsec/fiu022

subject

Has Abstract

pub_date

2015-02-01 00:00:00

pages

1-13

issue

2

eissn

0168-6496

issn

1574-6941

pii

fiu022

journal_volume

91

pub_type

杂志文章
  • Age, gut location and diet impact the gut microbiome of a tropical herbivorous surgeonfish.

    abstract::Herbivorous fishes play important ecological roles in coral reefs by consuming algae that can otherwise outcompete corals, but we know little about the gut microbiota that facilitates this process. This study focussed on the gut microbiota of an ecologically important coral reef fish, the convict surgeonfish Acanthuru...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1093/femsec/fiz179

    authors: Parata L,Nielsen S,Xing X,Thomas T,Egan S,Vergés A

    更新日期:2020-01-01 00:00:00

  • Use of 16S rRNA-targeted oligonucleotide probes to investigate the distribution of sulphate-reducing bacteria in estuarine sediments.

    abstract::The distribution of sulphate-reducing bacteria (SRBs) in three anaerobic sediments, one predominantly freshwater and low sulphate and two predominantly marine and high sulphate, on the River Tama, Tokyo, Japan, was investigated using 16S rRNA-targeted oligonucleotide probes. Hybridisation results and sulphate reductio...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1111/j.1574-6941.2001.tb00836.x

    authors: Purdy KJ,Nedwell DB,Embley TM,Takii S

    更新日期:2001-07-01 00:00:00

  • Plasmid localisation of atrazine-degrading genes in newly described Chelatobacter and Arthrobacter strains.

    abstract::Abstract In a previous study, we isolated a collection of atrazine-degrading bacteria from various soils. The aim of this study was to localise the atrazine-degrading genes in these 25 atrazine-degrading strains. In the case of the Gram-negative strains of Chelatobacter heintzii, six to seven plasmids were observed. T...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1111/j.1574-6941.2002.tb00967.x

    authors: Rousseaux S,Soulas G,Hartmann A

    更新日期:2002-07-01 00:00:00

  • Mathematical modelling of antimicrobial resistance in agricultural waste highlights importance of gene transfer rate.

    abstract::Antimicrobial resistance is of global concern. Most antimicrobial use is in agriculture; manures and slurry are especially important because they contain a mix of bacteria, including potential pathogens, antimicrobial resistance genes and antimicrobials. In many countries, manures and slurry are stored, especially ove...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1093/femsec/fiw040

    authors: Baker M,Hobman JL,Dodd CE,Ramsden SJ,Stekel DJ

    更新日期:2016-04-01 00:00:00

  • Diversity of methicillin-resistant staphylococci among wild Lepus granatensis: first detection of mecA-MRSA in hares.

    abstract::MRSA in humans, pets and livestock have been widely investigated, nevertheless, there is still little information of MRSA in wild animals. Therefore, this study aimed to investigate the occurrence and antimicrobial resistance profiles of methicillin-resistant staphylococci (MRS) in wild Iberian hares and to characteri...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1093/femsec/fiz204

    authors: Silva V,Pereira JE,Maltez L,Ferreira E,Manageiro V,Caniça M,Capelo JL,Igrejas G,Poeta P

    更新日期:2020-01-01 00:00:00

  • Diet shapes the gut microbiota of the omnivorous cockroach Blattella germanica.

    abstract::The gut microbiota of insects contributes positively to the physiology of its host mainly by participating in food digestion, protecting against pathogens, or provisioning vitamins or amino acids, but the dynamics of this complex ecosystem is not well understood so far. In this study, we have characterized the gut mic...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1093/femsec/fiv022

    authors: Pérez-Cobas AE,Maiques E,Angelova A,Carrasco P,Moya A,Latorre A

    更新日期:2015-04-01 00:00:00

  • Members of Microvirga and Bradyrhizobium genera are native endosymbiotic bacteria nodulating Lupinus luteus in Northern Tunisian soils.

    abstract::The genetic diversity of bacterial populations nodulating Lupinus luteus (yellow lupine) in Northern Tunisia was examined. Phylogenetic analyses of 43 isolates based on recA and gyrB partial sequences grouped them in three clusters, two of which belong to genus Bradyrhizobium (41 isolates) and one, remarkably, to Micr...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1093/femsec/fix068

    authors: Msaddak A,Rejili M,Durán D,Rey L,Imperial J,Palacios JM,Ruiz-Argüeso T,Mars M

    更新日期:2017-06-01 00:00:00

  • The effects of feeding and withholding food on the canine small intestinal microbiota.

    abstract::Prolonged lack of enteral feeding has a negative impact on gut physiology, potentially via microbiota modulation. The aims were to investigate the impact of fasting and post-prandial changes in canine jejunal microbiota. To study post-prandial effects, jejunal brushings were analyzed in 8 healthy fistulated dogs 15 mi...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1093/femsec/fiw085

    authors: Kasiraj AC,Harmoinen J,Isaiah A,Westermarck E,Steiner JM,Spillmann T,Suchodolski JS

    更新日期:2016-06-01 00:00:00

  • The bacterial microbiota of Stolotermes ruficeps (Stolotermitidae), a phylogenetically basal termite endemic to New Zealand.

    abstract::Stolotermes ruficeps is a widespread, primitive, lower termite occupying dead and decaying wood of many tree species in New Zealand's temperate forests. We identified core bacterial taxa involved in gut processes through combined DNA- and RNA (cDNA)-based pyrosequencing analysis of the 16S nucleotide sequence from fiv...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1111/1574-6941.12424

    authors: Reid NM,Addison SL,West MA,Lloyd-Jones G

    更新日期:2014-12-01 00:00:00

  • Succession in the intestinal microbiota of preadolescent turkeys.

    abstract::In the present study, automated ribosomal intergenic spacer analysis (ARISA), library sequence analysis, real-time PCR detection of Bacteroides uniformis and Campylobacter coli and dot-blot hybridizations of Clostridiaceae were used to identify trends in microbial colonization of the ceca of male turkeys. Two separate...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1111/j.1574-6941.2006.00245.x

    authors: Scupham AJ

    更新日期:2007-04-01 00:00:00

  • Kinetoplastid flagellates overlooked by universal primers dominate in the oxygenated hypolimnion of Lake Biwa, Japan.

    abstract::Kinetoplastid flagellates, microscopically often detected from various aquatic environments and considered ubiquitous are seldom reported in molecular diversity studies with universal eukaryote DNA primers. To investigate this inconsistency, we examined nanoflagellate diversity in Lake Biwa, Japan by 18S rRNA gene clo...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1093/femsec/fiv083

    authors: Mukherjee I,Hodoki Y,Nakano S

    更新日期:2015-08-01 00:00:00

  • Phylogenetic and clonality analysis of Bacillus pumilus isolates uncovered a highly heterogeneous population of different closely related species and clones.

    abstract::Bacillus pumilus is a Gram-positive bacterium with a wide range of attributed applications, namely as a plant growth promoting rhizobacteria (PGPR), animal, and human probiotic. However, a rare putative role in human diseases has been reported, namely in food poisoning or as anthrax-like cutaneous infectious agent. Th...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1111/1574-6941.12426

    authors: Branquinho R,Meirinhos-Soares L,Carriço JA,Pintado M,Peixe LV

    更新日期:2014-12-01 00:00:00

  • Temporal shifts of the Norway lobster (Nephrops norvegicus) gut bacterial communities.

    abstract::The aim of this study was to investigate the gut bacterial communities of Nephrops norvegicus individuals, using a suite of molecular tools consisting of automated ribosomal intergenic spacer analysis, 16S rRNA gene-internal transcribed spacer clone libraries and FISH. The animals were collected from Pagasitikos Gulf,...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1111/j.1574-6941.2010.00964.x

    authors: Meziti A,Ramette A,Mente E,Kormas KA

    更新日期:2010-11-01 00:00:00

  • Occurrence and expression of bacterial human virulence gene homologues in natural soil bacteria.

    abstract::The presence and in vitro expression of homologues to 22 bacterial human virulence determinants amongst culturable soil bacteria were investigated. About 25% of the bacterial isolates contained virulence gene homologues representing toxin (hblA, cytK2), adhesin (fimH), regulator (phoQ) and resistance (yfbI) determinan...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1111/1574-6941.12413

    authors: Søborg DA,Hendriksen NB,Kroer N

    更新日期:2014-11-01 00:00:00

  • Sponges from Zanzibar host diverse prokaryotic communities with potential for natural product synthesis.

    abstract::Sponges are one of the most dominant organisms in marine ecosystems. One reason for their success is their association with microorganisms that are besides the host itself responsible for the chemical defence. Sponge abundances have been increasing on coral reefs in the Western Indian Ocean (WIO) and are predicted to ...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1093/femsec/fiz026

    authors: Helber SB,Steinert G,Wu YC,Rohde S,Hentschel U,Muhando CA,Schupp PJ

    更新日期:2019-04-01 00:00:00

  • Effect of temperature change on the composition of the bacterial and archaeal community potentially involved in the turnover of acetate and propionate in methanogenic rice field soil.

    abstract::The microbial community structure was investigated together with the path of methane production in Italian rice field soil incubated at moderate (35 degrees C) and high (45 degrees C) temperature using terminal restriction fragment length polymorphism and stable isotope fractionation. The structure of both the archaea...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1111/j.1574-6941.2010.00883.x

    authors: Noll M,Klose M,Conrad R

    更新日期:2010-08-01 00:00:00

  • Methods for field measurement of antibiotic concentrations: limitations and outlook.

    abstract::The growing prevalence of antibiotic resistance poses an increasingly serious threat to human health. Although an important driver of antibiotic resistance is the continuous exposure of bacteria to sublethal concentrations of antibiotics in natural environments, antibiotic pollutants are not currently tracked globally...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章,评审

    doi:10.1093/femsec/fiy105

    authors: Parthasarathy R,Monette CE,Bracero S,S Saha M

    更新日期:2018-08-01 00:00:00

  • An emerging view of the diversity, ecology and function of Archaea in alkaline hydrothermal environments.

    abstract::The described diversity within the domain Archaea has recently expanded due to advances in sequencing technologies, but many habitats that likely harbor novel lineages of archaea remain understudied. Knowledge of archaea within natural and engineered hydrothermal systems, such as hot springs and engineered subsurface ...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1093/femsec/fiaa246

    authors: Mueller RC,Peach JT,Skorupa DJ,Copié V,Bothner B,Peyton BM

    更新日期:2021-01-26 00:00:00

  • GeoChip-based insights into the microbial functional gene repertoire of marine sponges (high microbial abundance, low microbial abundance) and seawater.

    abstract::The GeoChip 4.2 gene array was employed to interrogate the microbial functional gene repertoire of sponges and seawater collected from the Red Sea and the Mediterranean. Complementary amplicon sequencing confirmed the microbial community composition characteristic of high microbial abundance (HMA) and low microbial ab...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1111/1574-6941.12441

    authors: Bayer K,Moitinho-Silva L,Brümmer F,Cannistraci CV,Ravasi T,Hentschel U

    更新日期:2014-12-01 00:00:00

  • Composition and diversity of ammonia-oxidising bacterial communities in wastewater treatment reactors of different design treating identical wastewater.

    abstract::Autotrophic ammonia-oxidising bacteria (AOB) are a crucial component of the microbial communities of nitrifying wastewater treatment systems. Nitrification is known to occur in reactors of different configuration, but whether AOB communities are different in reactors of different design is unknown. We compared the div...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1111/j.1574-6941.2003.tb01059.x

    authors: Rowan AK,Snape JR,Fearnside D,Barer MR,Curtis TP,Head IM

    更新日期:2003-03-01 00:00:00

  • Potential for atmospheric deposition of bacteria to influence bacterioplankton communities.

    abstract::Biogeographic patterns in microbial communities are an exciting but controversial topic in microbial ecology. Advances in theory pertaining to assembly of microbial communities have made strong assumptions about dispersal of bacteria without exploration. For this reason, we investigated rates of atmospheric bacterial ...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1111/j.1574-6941.2008.00476.x

    authors: Jones SE,Newton RJ,McMahon KD

    更新日期:2008-06-01 00:00:00

  • Molecular analysis of bacterial microbiota in the gut of the termite Reticulitermes speratus (Isoptera; Rhinotermitidae).

    abstract::The molecular diversity and community structure of bacteria from the gut of the termite Reticulitermes speratus were analyzed by the sequencing of near-full-length 16S rRNA genes, amplified by polymerase chain reaction. The results of the analysis of 1344 clones indicated a predominance of spirochetes in the gut. Spir...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1016/S0168-6496(03)00026-6

    authors: Hongoh Y,Ohkuma M,Kudo T

    更新日期:2003-05-01 00:00:00

  • Distinct bacterial assemblages reside at different depths in Arctic multiyear sea ice.

    abstract::Bacterial communities in Arctic sea ice play an important role in the regulation of nutrient and energy dynamics in the Arctic Ocean. Sea ice has vertical gradients in temperature, brine salinity and volume, and light and UV levels. Multiyear ice (MYI) has at least two distinct ice layers: old fresh ice with limited p...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1111/1574-6941.12377

    authors: Hatam I,Charchuk R,Lange B,Beckers J,Haas C,Lanoil B

    更新日期:2014-10-01 00:00:00

  • Molecular diversity of diazotrophs in oligotrophic tropical seagrass bed communities.

    abstract::Denaturing gradient gel electrophoresis (DGGE) was employed to resolve PCR-amplified nifH sequences from vegetated and unvegetated sediments from two oligotrophic seagrass bed sites on San Salvador Island, Bahamas, in order to assess diazotroph species composition. All DGGE profiles from these sites showed the same pr...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1111/j.1574-6941.2002.tb00912.x

    authors: Bagwell CE,Rocque JR,Smith GW,Polson SW,Friez MJ,Longshore JW,Lovell CR

    更新日期:2002-02-01 00:00:00

  • Variations of algal communities cause darkening of a Greenland glacier.

    abstract::We have assessed the microbial ecology on the surface of Mittivakkat glacier in SE-Greenland during the exceptional high melting season in July 2012 when the so far most extreme melting rate for the Greenland Ice Sheet has been recorded. By employing a complementary and multi-disciplinary field sampling and analytical...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1111/1574-6941.12351

    authors: Lutz S,Anesio AM,Jorge Villar SE,Benning LG

    更新日期:2014-08-01 00:00:00

  • Growth and chemosensory behavior of sulfate-reducing bacteria in oxygen-sulfide gradients.

    abstract::Growth and chemotactic behavior in oxic-anoxic gradients were studied with two freshwater and four marine strains of sulfate-reducing bacteria related to the genera Desulfovibrio, Desulfomicrobium or Desulfobulbus. Cells were grown in oxygen-sulfide counter-gradients within tubes filled with agar-solidified medium. Th...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1111/j.1574-6941.2002.tb00935.x

    authors: Sass AM,Eschemann A,Kühl M,Thar R,Sass H,Cypionka H

    更新日期:2002-04-01 00:00:00

  • Evaluation of PCR primers for universal nifH gene targeting and for assessment of transcribed nifH pools in roots of Oryza longistaminata with and without low nitrogen input.

    abstract::The bias of widely used degenerate nifH-specific primer sets was first tested using denaturing gradient gel electrophoresis (DGGE), and their application for profiling of complex communities assessed for roots of Oryza longistaminata. When primers (P) with mismatches at nondegenerate positions were used on genomic DNA...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1111/j.1574-6941.2008.00545.x

    authors: Demba Diallo M,Reinhold-Hurek B,Hurek T

    更新日期:2008-08-01 00:00:00

  • Analysis of DGGE profiles to explore the relationship between prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin.

    abstract::The aim of this work was to relate depth profiles of prokaryotic community composition with geochemical processes in the deep subseafloor biosphere at two shallow-water sites on the Peru Margin in the Pacific Ocean (ODP Leg 201, sites 1228 and 1229). Principal component analysis of denaturing gradient gel electrophore...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1111/j.1574-6941.2006.00144.x

    authors: Fry JC,Webster G,Cragg BA,Weightman AJ,Parkes RJ

    更新日期:2006-10-01 00:00:00

  • Antibacterial potential of antagonistic Streptomyces sp. isolated from marine sponge Dendrilla nigra.

    abstract::The role of Streptomyces sp. (BTL7) in synthesis of antibacterial agents reported from the marine sponge Dendrilla nigra was evaluated. Selective isolation of actinomycetes was performed on the newly developed selective media, Sponge Agar (SA) 1 and SA 2. The growth rate and antibiotic production were increased on the...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1016/j.femsec.2004.06.007

    authors: Selvin J,Joseph S,Asha KR,Manjusha WA,Sangeetha VS,Jayaseema DM,Antony MC,Denslin Vinitha AJ

    更新日期:2004-11-01 00:00:00

  • The effects of fungal root endophytes on plant growth are stable along gradients of abiotic habitat conditions.

    abstract::Plant symbioses with fungal root endophytes span a continuum from mutualistic to parasitic outcomes, and are highly variable depending on the genotype of each symbiont. The abiotic context in which interactions occur also seems to influence the outcome of plant-endophyte symbioses, but we lack understanding of its rel...

    journal_title:FEMS microbiology ecology

    pub_type: 杂志文章

    doi:10.1093/femsec/fix162

    authors: Kia SH,Jurkechova M,Glynou K,Piepenbring M,Maciá-Vicente JG

    更新日期:2018-02-01 00:00:00