Unveiling the fungal mycobiota present throughout the cork stopper manufacturing process.

abstract：:Green turtles (Chelonia mydas) are endangered marine herbivores that break down food particles, primarily sea grasses, through microbial fermentation. However, the microbial community and its role in health and disease is still largely unexplored. In this study, we investigated and compared the fecal bacterial communi...

journal_title：FEMS microbiology ecology

authors： Ahasan MS,Waltzek TB,Huerlimann R,Ariel E

更新日期：2017-12-01 00:00:00

abstract：:We investigated ammonia-oxidizing bacteria in activated sludge collected from 12 sewage treatment systems, whose ammonia removal and treatment processes differed, during three different seasons. We used real-time PCR quantification to reveal total bacterial numbers and total ammonia oxidizer numbers, and used specific...

journal_title：FEMS microbiology ecology

authors： Limpiyakorn T,Shinohara Y,Kurisu F,Yagi O

更新日期：2005-10-01 00:00:00

abstract：:We present an individual-based experimental framework to identify and estimate the main parameters governing bacterial conjugation at the individual cell scale. From this analysis, we have established that transient periods of unregulated plasmid transfer within newly formed transconjugant cells, together with contact...

journal_title：FEMS microbiology ecology

authors： Seoane J,Yankelevich T,Dechesne A,Merkey B,Sternberg C,Smets BF

更新日期：2011-01-01 00:00:00

abstract：:Dissolved organic carbon (DOC) photochemical reactions establish important links between DOC and planktonic bacteria. We hypothesize that seasonal changes in DOC quality, related to the flood pulse, drive the effects of light-DOC interactions on uptake by planktonic bacteria uptake in clear-water Amazonian ecosystems....

journal_title：FEMS microbiology ecology

authors： Amado AM,Farjalla VF,Esteves Fde A,Bozelli RL,Roland F,Enrich-Prast A

更新日期：2006-04-01 00:00:00

abstract：:Definition of lichens has evolved from bi(tri)partite associations to multi-species symbioses, where bacteria would play essential roles. Besides, although soil bacterial communities are known to be affected by edaphic factors, when lichens grow upon them these could become less preponderant. We hypothesized that the ...

journal_title：FEMS microbiology ecology

authors： Leiva D,Clavero-León C,Carú M,Orlando J

更新日期：2016-11-01 00:00:00

abstract：:Pressure-resistant circulating systems were constructed to enable the investigation of attached and unattached microbial populations under in situ pressure (2.5 MPa), diversity, dissolved gas and chemistry conditions. Three parallel flow cell cabinets were configured to allow observation of the effect on microbial met...

journal_title：FEMS microbiology ecology

authors： Pedersen K

更新日期：2012-07-01 00:00:00

abstract：:The aim of this study was to investigate the gut bacterial communities of Nephrops norvegicus individuals, using a suite of molecular tools consisting of automated ribosomal intergenic spacer analysis, 16S rRNA gene-internal transcribed spacer clone libraries and FISH. The animals were collected from Pagasitikos Gulf,...

journal_title：FEMS microbiology ecology

authors： Meziti A,Ramette A,Mente E,Kormas KA

更新日期：2010-11-01 00:00:00

abstract：:The microbial communities of in situ reactor columns degrading benzene with sulfate as an electron acceptor were analyzed based on clone libraries and terminal restriction fragment length polymorphism fingerprinting of PCR-amplified 16S rRNA genes. The columns were filled with either lava granules or sand particles an...

journal_title：FEMS microbiology ecology

authors： Kleinsteuber S,Schleinitz KM,Breitfeld J,Harms H,Richnow HH,Vogt C

更新日期：2008-10-01 00:00:00

abstract：:A large number of antibiotic-resistant P. aeruginosa isolates are continuously discharged into natural water basins mainly through sewage. However, the environmental reservoirs of antibiotic resistance factors are poorly understood. In this study, the antibiotic resistance patterns of 245 isolates from various aquatic...

journal_title：FEMS microbiology ecology

authors： Olga P,Apostolos V,Alexis G,George V,Athena M

更新日期：2016-05-01 00:00:00

abstract：:Rhodococcus sp. strain DTB (DSM 44534) was grown on a mixture of (R,R)-, (S,S)- and meso-bis-(1-chloro-2-propyl) ether (BCPE) as the sole source of carbon and energy. During BCPE degradation 1'-chloro-2'-propyl-3-chloro-2-prop-1-enyl-ether (DVE), 1-chloro-2-propanol and chloroacetone intermediates were formed. The BCP...

journal_title：FEMS microbiology ecology

authors： Garbe LA,Moreno-Horn M,Tressl R,Görisch H

更新日期：2006-01-01 00:00:00

abstract：:We report first insights into a representative genome of rice cluster I (RC-I), a major group of as-yet uncultured methanogens. The starting point of our study was the methanogenic consortium MRE50 that had been stably maintained for 3 years by consecutive transfers to fresh medium and anaerobic incubation at 50 degre...

journal_title：FEMS microbiology ecology

authors： Erkel C,Kemnitz D,Kube M,Ricke P,Chin KJ,Dedysh S,Reinhardt R,Conrad R,Liesack W

更新日期：2005-07-01 00:00:00

abstract：:Plant symbioses with fungal root endophytes span a continuum from mutualistic to parasitic outcomes, and are highly variable depending on the genotype of each symbiont. The abiotic context in which interactions occur also seems to influence the outcome of plant-endophyte symbioses, but we lack understanding of its rel...

journal_title：FEMS microbiology ecology

authors： Kia SH,Jurkechova M,Glynou K,Piepenbring M,Maciá-Vicente JG

更新日期：2018-02-01 00:00:00

abstract：:This study tests the hypothesis that altering the mineral composition of soil influences microbial community structure in a nutrient-deficient soil. Microcosms were established by adding mica (M), basalt (B) and rock phosphate (P) to soil separately, and in combination (MBP), and by planting with Lolium rigidum, Trifo...

journal_title：FEMS microbiology ecology

authors： Carson JK,Rooney D,Gleeson DB,Clipson N

更新日期：2007-09-01 00:00:00

abstract：:The distribution of sulphate-reducing bacteria (SRBs) in three anaerobic sediments, one predominantly freshwater and low sulphate and two predominantly marine and high sulphate, on the River Tama, Tokyo, Japan, was investigated using 16S rRNA-targeted oligonucleotide probes. Hybridisation results and sulphate reductio...

journal_title：FEMS microbiology ecology

authors： Purdy KJ,Nedwell DB,Embley TM,Takii S

更新日期：2001-07-01 00:00:00

abstract：:The investigated deeply buried marine sediments of the shallow shelf off New Jersey, USA, are characterized by low organic carbon content and total cell counts of < 10(7) cells per mL sediment. The qPCR data for Bacteria and Archaea were in the same orders of magnitude as the total cell counts. Archaea and Bacteria oc...

journal_title：FEMS microbiology ecology

authors： Breuker A,Stadler S,Schippers A

更新日期：2013-09-01 00:00:00

abstract：:As water is a source of nosocomial infections in hospitals, the presence of fastidious Gram-negative bacteria in water samples taken in a university hospital was investigated. Water samples were inoculated onto agar plates and into amoebal microplates for co-culture. Sixty-eight alpha proteobacteria isolates were obta...

journal_title：FEMS microbiology ecology

authors： La Scola B,Barrassi L,Raoult D

更新日期：2000-12-01 00:00:00

abstract：:The gut microbiota of insects contributes positively to the physiology of its host mainly by participating in food digestion, protecting against pathogens, or provisioning vitamins or amino acids, but the dynamics of this complex ecosystem is not well understood so far. In this study, we have characterized the gut mic...

journal_title：FEMS microbiology ecology

authors： Pérez-Cobas AE,Maiques E,Angelova A,Carrasco P,Moya A,Latorre A

更新日期：2015-04-01 00:00:00

abstract：:The polychlorinated biphenyl (PCB)-degrading Pseudomonas sp. B4 was tested for its motility and ability to sense and respond to biphenyl, its chloroderivatives and chlorobenzoates in chemotaxis assays. Pseudomonas sp. B4 was attracted to biphenyl, PCBs and benzoate in swarm plate and capillary assays. Chemotaxis towar...

journal_title：FEMS microbiology ecology

authors： Gordillo F,Chávez FP,Jerez CA

更新日期：2007-05-01 00:00:00

abstract：:We present a method for the rapid and simple extraction of DNA from marine sediments using electroelution. It effectively separates DNA from compounds, including humic substances, that interfere with subsequent DNA quantification and amplification. After extraction of the DNA from the sediment into an aqueous solution...

journal_title：FEMS microbiology ecology

authors： Kallmeyer J,Smith DC

更新日期：2009-07-01 00:00:00

abstract：:Phytate-mineralizing rhizobacteria (PMR) perform an essential function for the mineralization of organic phosphorus but little is known about their ecology in soils and rhizosphere. In this study, PCR-based methods were developed for detection and quantification of the Bacillus β-propeller phytase (BPP) gene. Experime...

journal_title：FEMS microbiology ecology

authors： Jorquera MA,Saavedra N,Maruyama F,Richardson AE,Crowley DE,del C Catrilaf R,Henriquez EJ,de la Luz Mora M

更新日期：2013-02-01 00:00:00

abstract：:Fungal communities in Norway spruce (Picea abies) logs in two forests in Sweden were investigated by 454-sequence analyses and by examining the ecological roles of the detected taxa. We also investigated the relationship between fruit bodies and mycelia in wood and whether community assembly was affected by how the de...

journal_title：FEMS microbiology ecology

authors： Ottosson E,Kubartová A,Edman M,Jönsson M,Lindhe A,Stenlid J,Dahlberg A

更新日期：2015-03-01 00:00:00

abstract：:The bias of widely used degenerate nifH-specific primer sets was first tested using denaturing gradient gel electrophoresis (DGGE), and their application for profiling of complex communities assessed for roots of Oryza longistaminata. When primers (P) with mismatches at nondegenerate positions were used on genomic DNA...

journal_title：FEMS microbiology ecology

authors： Demba Diallo M,Reinhold-Hurek B,Hurek T

更新日期：2008-08-01 00:00:00

abstract：:The influence of chromium on the microbial community structure was analyzed in a river system subjected to long-term chromium contamination, by plating and by sequencing 16S rRNA genes cloned from DNA extracted from the river sediments. We also analyzed the influence of chromium on the ability of the microbial communi...

journal_title：FEMS microbiology ecology

authors： Branco R,Chung AP,Veríssimo A,Morais PV

更新日期：2005-09-01 00:00:00

abstract：:Biodiversity patterns have been successfully linked to many ecosystem functions, and microbial communities have been suspected to harbour a large amount of functionally redundant taxa. We manipulated the diversity of stream and lake water column bacterial communities and investigated how the reduction in diversity aff...

journal_title：FEMS microbiology ecology

authors： Ylla I,Peter H,Romaní AM,Tranvik LJ

更新日期：2013-07-01 00:00:00

abstract：:Abstract Studies on the diversity of environmental culturable Pseudomonas populations are dependent on the isolation procedure. This procedure includes the use of selective media which may influence the recovery of strains and thus the diversity described. In this study, we assessed the use of two agar isolation media...

journal_title：FEMS microbiology ecology

authors： Tarnawski S,Hamelin J,Locatelli L,Aragno M,Fromin N

更新日期：2003-07-01 00:00:00

abstract：:Several studies have shown that microbial communities in Antarctic environments are highly diverse. However, considering that the Antarctic Peninsula is among the regions with the fastest warming rates, and that regional climate change has been linked to an increase in the mean rate of glacier retreat, the microbial d...

journal_title：FEMS microbiology ecology

authors： Pessi IS,Osorio-Forero C,Gálvez EJ,Simões FL,Simões JC,Junca H,Macedo AJ

更新日期：2015-01-01 00:00:00

abstract：:Abstract In a previous study, we isolated a collection of atrazine-degrading bacteria from various soils. The aim of this study was to localise the atrazine-degrading genes in these 25 atrazine-degrading strains. In the case of the Gram-negative strains of Chelatobacter heintzii, six to seven plasmids were observed. T...

journal_title：FEMS microbiology ecology

authors： Rousseaux S,Soulas G,Hartmann A

更新日期：2002-07-01 00:00:00

abstract：:Maintaining beneficial interactions with microbial symbionts is vital for animal health. Yet, for social insects, the stability of microbial associations within and between cohorts is largely unknown. We investigated temporal changes in the microbiomes of nine stingless bee (Tetragonula carbonaria) colonies at seven t...

journal_title：FEMS microbiology ecology

authors： Hall MA,Brettell LE,Liu H,Nacko S,Spooner-Hart R,Riegler M,Cook JM

更新日期：2020-12-30 00:00:00

abstract：:Molecular bacterial community composition was characterized from three geographically distinct spacecraft-associated clean rooms to determine whether such populations are influenced by the surrounding environment or the maintenance of the clean rooms. Samples were collected from facilities at the Jet Propulsion Labora...

journal_title：FEMS microbiology ecology

authors： Moissl C,Osman S,La Duc MT,Dekas A,Brodie E,DeSantis T,Venkateswaran K

更新日期：2007-09-01 00:00:00

abstract：:Peat accumulating mires are important sources of the greenhouse gas methane. Methane emissions and methanogenic Archaea communities have been shown to differ between fens and bogs, implying that mire succession includes an ecological succession in methanogen communities. We investigated methane production and the meth...

journal_title：FEMS microbiology ecology

authors： Merilä P,Galand PE,Fritze H,Tuittila ES,Kukko-Oja K,Laine J,Yrjälä K

更新日期：2006-02-01 00:00:00