Identification and cross-species transferability of 112 novel unigene-derived microsatellite markers in tea (Camellia sinensis).

Abstract:

PREMISE OF THE STUDY:Tea Unigene-derived MicroSatellite (TUGMS) markers were identified from the publicly available EST data in Camellia sinensis for characterization and future genome mapping studies in tea. METHODS AND RESULTS:One hundred twelve novel TUGMS markers were identified from 4356 unigenes derived by clustering of 12788 random ESTs in C. sinensis. Amplification-based validation of the TUGMS loci proved them to be highly polymorphic [an average (av.) of 5.24 alleles], heterozygous (H(E), av. 0.746; H(o), av. 0.566) and informative (PIC, av. 0.392). TUGMS loci were 100% transferable in cultivated C. assamica and C. assamica subsp. lasiocalyx and highly cross-transferrable to the related species C. japonica, C. rosiflora, and C. sasanqua. CONCLUSIONS:These 112 novel highly polymorphic TUGMS markers with proven cross-species transferability will facilitate the future genetic diversity and genome mapping studies in tea.

journal_name

Am J Bot

authors

Sharma H,Kumar R,Sharma V,Kumar V,Bhardwaj P,Ahuja PS,Sharma RK

doi

10.3732/ajb.1000525

subject

Has Abstract

pub_date

2011-06-01 00:00:00

pages

e133-8

issue

6

eissn

0002-9122

issn

1537-2197

pii

ajb.1000525

journal_volume

98

pub_type

杂志文章
  • Phylogeny of palaeotropic Derris-like taxa (Fabaceae) based on chloroplast and nuclear DNA sequences shows reorganization of (infra)generic classifications is needed.

    abstract:PREMISE OF THE STUDY:Palaeotropic Derris-like taxa (family Fabaceae, tribe Millettieae) comprise 6-9 genera. They are well known as important sources of rotenone toxin, which are used as organic insecticide and fish poison. However, their phylogenetic relationships and classification are still problematic due to insuff...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1200390

    authors: Sirichamorn Y,Adema FA,Gravendeel B,van Welzen PC

    更新日期:2012-11-01 00:00:00

  • The four-celled female gametophyte of Illicium (Illiciaceae; Austrobaileyales): implications for understanding the origin and early evolution of monocots, eumagnoliids,and eudicots.

    abstract::The recent consensus that Amborellaceae, Nymphaeales, and Austrobaileyales form the three earliest-diverging lineages of angiosperms has led comparative biologists to reconsider the origin and early developmental evolution of the angiosperm seven-celled/eight-nucleate (Polygonum-type) female gametophyte. Illicium mexi...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.91.3.332

    authors: Williams JH,Friedman WE

    更新日期:2004-03-01 00:00:00

  • GRAFT INCOMPATIBILITY BETWEEN PEAR AND QUINCE: THE INFLUENCE OF METABOLITES OF CYDONIA OBLONGA ON SUSPENSION CULTURES OF PYRUS COMMUNIS.

    abstract::The fresh weights of suspension cultures of pear (Pyrus communis) and quince (Cydonia oblonga) increased exponentially for 30 to 40 days after subculturing. Transferring pear cultures to media in which quince cultures had grown for 10 days resulted in a 70% inhibition of callus growth. Transferring quince cultures to ...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.1002/j.1537-2197.1986.tb09673.x

    authors: Moore R

    更新日期:1986-01-01 00:00:00

  • The taxonomic value of fruit wing types in the order Apiales.

    abstract::This study shows that structural data, when carefully examined, can provide valuable characters for delimiting monophyletic groups and can complement DNA with observable features to recognize and circumscribe taxa. In the angiosperm order Apiales, traditional classification has relied heavily (often exclusively) on fr...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.93.9.1357

    authors: Liu MR,Plunkett GM,Lowry PP 2nd,Wyk BE,Tilney PM

    更新日期:2006-09-01 00:00:00

  • The sporophyte-less filmy fern of eastern North America Trichomanes intricatum (Hymenophyllaceae) has the chloroplast genome of an Asian species.

    abstract::Trichomanes intricatum, the sporophyte-less filmy fern of the eastern United States, has been considered to be a species whose sporophyte generation has become extinct or is possibly still present among the many species of Trichomanes s.l. in the new world tropics but unable to grow in a temperate climate. A close rel...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.0800122

    authors: Ebihara A,Farrar DR,Ito M

    更新日期:2008-12-01 00:00:00

  • Northern hemisphere biogeography of Cerastium (Caryophyllaceae): insights from phylogenetic analysis of noncoding plastidnucleotide sequences.

    abstract::Phylogenetic relationships and biogeography of the genus Cerastium were studied using sequences of three noncoding plastid DNA regions (trnL intron, trnL-trnF spacer, and psbA-trnH spacer). A total of 57 Cerastium taxa was analyzed using two species of the putative sister genus Stellaria as outgroups. Maximum parsimon...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.91.6.943

    authors: Scheen AC,Brochmann C,Brysting AK,Elven R,Morris A,Soltis DE,Soltis PS,Albert VA

    更新日期:2004-06-01 00:00:00

  • Recovery from bud disappearance explains prolonged dormancy in Cleistes bifaria (Orchidaceae).

    abstract:PREMISE OF THE STUDY:Virtually nothing is known about what actually happens during prolonged dormancy, the period during which significant proportions of geophyte populations do not sprout after seasonal dormancy but remain alive underground, to emerge again 1 or more years later. This study investigated the fate of pe...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1000262

    authors: Gregg KB

    更新日期:2011-02-01 00:00:00

  • Genetic variation and phylogeography of Stauracanthus (Fabaceae, Genisteae) from the Iberian Peninsula and northern Morocco assessed by chloroplast microsatellite (cpSSR) markers.

    abstract::The tribe Genisteae includes genera of great ecological importance in Mediterranean countries because they are dominant elements of many plant communities. Genetic variation and diversification patterns in Stauracanthus (Genisteae) provide information relevant for the study of the processes of diversification in relat...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.95.1.98

    authors: Pardo C,Cubas P,Tahiri H

    更新日期:2008-01-01 00:00:00

  • Long-distance pine pollen still germinates after meso-scale dispersal.

    abstract::Viability of long-distance pollen links ecological models to the genetic structure of forest tree populations, determining how forests will adapt to climate change and how far genes flow from genetically modified (GM) pine plantations. Addressing this landscape-scale inquiry is feasible when the pollen source, the del...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.0900255

    authors: Williams CG

    更新日期:2010-05-01 00:00:00

  • EXPERIMENTAL HYBRIDIZATION OF XANTHIUM STRUMARIUM (COMPOSITAE) FROM ASIA AND AMERICA. I. RESPONSES OF F1 HYBRIDS TO PHOTOPERIOD AND TEMPERATURE.

    abstract::Responses to photoperiod and temperature were compared for hybrids between Asiatic plants in the indigenous strumarium morphological complex and plants in five American complexes: oviforme, italicum, chinense, cavanillesii, and pennsylvancium. The F1 hybrids between Hong Kong plants and various American plants showed ...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.1002/j.1537-2197.1975.tb12336.x

    authors: McMillan C

    更新日期:1975-01-01 00:00:00

  • Pinus baileyi (section Pinus, Pinaceae) from the Paleogene of Idaho, USA.

    abstract::Pinus baileyi from the Paleogene of Idaho was initially related to the bristlecone pine P. longaeva (subgen. Strobus, sect. Parrya, subsect. Balfourianae) from western North America. Unlike the centromucronate condition in P. longaeva, P. baileyi cones have raised umbos that are excentromucronate, i.e., the mucro posi...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.93.2.197

    authors: Erwin DM,Schorn HE

    更新日期:2006-02-01 00:00:00

  • Origins and introgression of polyploid species in Mentzelia section Trachyphytum (Loasaceae).

    abstract:UNLABELLED: PREMISE OF THE STUDY:Polyploid speciation has been important in plant evolution. However, the conditions that favor the origination and persistence of polyploids are still not well understood. Here, we examine origins of 16 polyploid species in Mentzelia section Trachyphytum. • METHODS:We used phylogeny r...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.0900388

    authors: Brokaw JM,Hufford L

    更新日期:2010-09-01 00:00:00

  • Characterization and systematic implications of the diversity in timing of programmed cell death of the suspensors in Leguminosae.

    abstract:PREMISE OF THE STUDY:In angiosperm seeds, the developing embryo acquires nutrients via a suspensor that typically undergoes programmed cell death (PCD) at the early cotyledon stage. However, in Leguminosae (the third largest angiosperm family), the suspensors can disappear at the heart-shaped stage (i.e., prior to the ...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1100314

    authors: Endo Y

    更新日期:2012-08-01 00:00:00

  • Genetic analyses of nickel tolerance in a North American serpentine endemic plant, Caulanthus amplexicaulis var. barbarae (Brassicaceae).

    abstract:PREMISE OF THE STUDY:The evolution of metal tolerance in plants is an important model for studies of adaptation to environment, population genetics, and speciation. Here, we investigated nickel tolerance in the North American serpentine endemic Caulanthus amplexicaulis var. barbarae in comparison with its nonserpentine...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1200382

    authors: Burrell AM,Hawkins AK,Pepper AE

    更新日期:2012-11-01 00:00:00

  • Inheritance of chloroplast DNA is not strictly maternal in Silene vulgaris (Caryophyllaceae): evidence from experimental crosses and natural populations.

    abstract::Chloroplast DNA (cpDNA) is maternally inherited in the majority, but not all, of angiosperm species. The mode of inheritance of cpDNA is a critical determinant of its molecular evolution and of its population genetic structure. Here, we present the results of investigations of the inheritance of cpDNA in Silene vulgar...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.94.8.1333

    authors: McCauley DE,Sundby AK,Bailey MF,Welch ME

    更新日期:2007-08-01 00:00:00

  • Cockroach pollination and breeding system of Uvaria elmeri (Annonaceae) in a lowland mixed-dipterocarp forest in Sarawak.

    abstract::Tropical forest plants are known to be pollinated by a diverse array of animals. Here we report on the pollination of a woody climber species, Uvaria elmeri (Annonaceae), by cockroaches in a lowland mixed-dipterocarp forest in Sarawak, Malaysia. To the best of our knowledge, this is the first report of pollination by ...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:

    authors: Nagamitsu T,Inoue T

    更新日期:1997-02-01 00:00:00

  • Genomics: a potential panacea for the perennial problem.

    abstract::Perennial crops represent important fresh and processed food sources worldwide, but advancements in breeding perennials are often impeded due to their very nature. The perennial crops we rely on most for food take several years to reach production maturity and require large spaces to grow, which make breeding new cult...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1400143

    authors: McClure KA,Sawler J,Gardner KM,Money D,Myles S

    更新日期:2014-10-01 00:00:00

  • Characterization of 21 microsatellite markers from cogongrass, Imperata cylindrica (Poaceae), a weed species distributed worldwide.

    abstract:PREMISE OF THE STUDY:Microsatellite loci were developed from Imperata cylindrica, a traditional medicinal herb in Asia and among the top 10 worst invasive weeds in the world, to aid in the identification of the limits of asexual clonal individuals. METHODS AND RESULTS:A total of 21 microsatellite markers, including 18...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1200152

    authors: Chiang YC,Tsai CC,Hsu TW,Chou CH

    更新日期:2012-11-01 00:00:00

  • Madagasikaria (Malpighiaceae): a new genus from Madagascar with implications for floral evolution in Malpighiaceae.

    abstract::Madagasikaria andersonii is described here as a new genus and species of Malpighiaceae from Madagascar. The phylogenetic placement of Madagasikaria was estimated by using combined data from ndhF and trnL-F chloroplast sequences and phytochrome (PHYC) and ITS nuclear sequences. It forms a strongly supported clade with ...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.89.4.699

    authors: Davis CC

    更新日期:2002-04-01 00:00:00

  • Variation in the strength of association among pollination systems and floral traits: evolutionary changes in the floral traits of Bornean gingers (Zingiberaceae).

    abstract:UNLABELLED: PREMISE OF THE STUDY:Diversification of floral traits in angiosperms is often attributed to have been driven by adaptations to pollinators. Nevertheless, phylogenetic studies on the relationships among evolutionary changes in floral traits and pollination systems are still limited. We examined the relation...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1200359

    authors: Sakai S,Kawakita A,Ooi K,Inoue T

    更新日期:2013-03-01 00:00:00

  • Evolution of novel morphological and reproductive traits in a clade containing Antirrhinum majus (Scrophulariaceae).

    abstract::Phylogenetic analysis of DNA sequences of the chloroplast genes rcbL and ndhf revealed a highly supported clade composed of the families Plantaginaceae, Callitrichaceae, and Hippuridaceae in close association with the model organism Antirrhinum majus and other members of family Scrophulariaceae. Plantago has miniature...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:

    authors: Reeves P,Olmstead R

    更新日期:1998-08-01 00:00:00

  • Patterns of variation in distylous traits and reproductive consequences in Erythroxylum species and populations.

    abstract:PREMISE:Distylous species possess two floral morphs with reciprocal positioning of stigmas and anthers that is hypothesized to promote disassortative pollination. Theoretical models predict equal morph frequencies, but many populations depart from the expected 1:1 ratio, a pattern that often correlates with asymmetric ...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.1002/ajb2.1478

    authors: Matias R,Pérez-Barrales R,Consolaro H

    更新日期:2020-06-01 00:00:00

  • Seedling establishment and life history trade-offs in alpine plants.

    abstract::Seedling establishment is central to population maintenance for nonclonal plant species. Plants with low recruitment rates are expected to have high survival rates, and life history theory indicates there should be a single curve for the trade-off between recruitment and mortality that applies to most or all plant spe...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.91.7.1147

    authors: Forbis TA,Doak DF

    更新日期:2004-07-01 00:00:00

  • Effect of aquatic weeds on methane emission from submerged paddy soil.

    abstract::Paddy fields are one of the dominant anthropogenic sources of methane emission to the atmosphere, and the main passageway of methane from paddy soil is through the rice plant. However, the effect of aquatic weeds on methane emission from rice paddies has not been properly evaluated yet. Methane emission from weeded po...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:

    authors: Inubushi K,Sugii H,Nishino S,Nishino E

    更新日期:2001-06-01 00:00:00

  • Population differences in self-fertility in the "self-incompatible" milkweed Asclepias exaltata (Asclepiadaceae).

    abstract::Individual plants of Asclepias exaltata (Asclepiadaceae) typically express an unusual self-incompatibility system under single-gene control. Hand-pollinations performed in six natural populations detected occasional self-fertile plants. The frequency of self-fertile individuals ranged from 0 to 34.0% and differed sign...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:

    authors: Lipow SR,Broyles SB,Wyatt R

    更新日期:1999-08-01 00:00:00

  • Do pollen donors with fastest-growing pollen tubes sire the best offspring in an anemophilous tree, Betula pendula (Betulaceae)?

    abstract::The relationship between pollen and progeny performance has been a subject of many studies but the evidence for pollen-tube growth rate as an indicator of progeny fitness is equivocal. We used an anemophilous tree, Betula pendula, to examine the relationship between pollen-tube growth rate and seed and seedling perfor...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:

    authors: Pasonen HL,Pulkkinen P,Käpylä M

    更新日期:2001-05-01 00:00:00

  • Seed morphology of modern and fossil Ampelocissus (Vitaceae) and implications for phytogeography.

    abstract::Seeds are useful in distinguishing among extant genera of Vitaceae and provide a good basis for interpretation of fossil remains in reconstructing the evolutionary and phytogeographic history of this putatively basal Rosid family. Seeds of Ampelocissus s.l. including Pterisanthes and Nothocissus are distinguished from...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.94.9.1534

    authors: Chen I,Manchester SR

    更新日期:2007-09-01 00:00:00

  • Morphology delimits more species than molecular genetic clusters of invasive Pilosella.

    abstract:UNLABELLED:• PREMISE OF THE STUDY:Accurate assessments of biodiversity are paramount for understanding ecosystem processes and adaptation to change. Invasive species often contribute substantially to local biodiversity; correctly identifying and distinguishing invaders is thus necessary to assess their potential impac...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1400466

    authors: Moffat CE,Ensing DJ,Gaskin JF,De Clerck-Floate RA,Pither J

    更新日期:2015-07-01 00:00:00

  • Biocrusts benefit from plant removal.

    abstract:PREMISE OF THE STUDY:Productivity in drylands may depend on the sensitivity of interactions between plants and biocrusts. Given future climate variability, it is essential to understand how interactions may be context-dependent with precipitation regime. Furthermore, little is known about the additional interactions of...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.1002/ajb2.1120

    authors: Dettweiler-Robinson E,Sinsabaugh RL,Rudgers JA

    更新日期:2018-07-01 00:00:00

  • Are trait-scaling relationships invariant across contrasting elevations in the widely distributed treeline species Nothofagus pumilio?

    abstract:PREMISE OF THE STUDY:The study of scaling examines the relative dimensions of diverse organismal traits. Understanding whether global scaling patterns are paralleled within species is key to identify causal factors of universal scaling. I examined whether the foliage-stem (Corner's rules), the leaf size-number, and the...

    journal_title:American journal of botany

    pub_type: 杂志文章

    doi:10.3732/ajb.1500439

    authors: Fajardo A

    更新日期:2016-05-01 00:00:00