Abstract:
:A specific requirement for lipids, particularly cardiolipin (CL), in cytochrome c oxidase (CcO) has been reported in many previous studies using mainly in vitro lipid removal approaches in mammalian systems. Our accompanying paper shows that CcO produced in markedly CL-depleted Rhodobacter sphaeroides displays wild-type properties in all respects, likely allowed by quantitative substitution with other negatively charged lipids. To further examine the structural basis for the lipid requirements of R. sphaeroides CcO and the extent of interchangeability between lipids, we employed a metabolic approach to enhance the alteration of the lipid profiles of the CcO-expressing strains of R. sphaeroides in vivo using a phosphate-limiting growth medium in addition to the CL-deficient mutation. Strikingly, the purified CcO produced under these conditions still maintained wild-type function and characteristics, in spite of even greater depletion of cardiolipin compared to that of the CL-deficient mutant alone (undetectable by MS) and drastically altered profiles of all the phospholipids and non-phospholipids. The lipids in the membrane and in the purified CcO were identified and quantified by ESI and MALDI mass spectrometry and tandem mass spectrometry. Comparison between the molecular structures of those lipids that showed major changes provides new insight into the structural rationale for the flexible lipid requirements of CcO from R. sphaeroides and reveals a more comprehensive interchangeability network between different phospholipids and non-phospholipids.
journal_name
Biochemistryjournal_title
Biochemistryauthors
Zhang X,Hiser C,Tamot B,Benning C,Reid GE,Ferguson-Miller SMdoi
10.1021/bi1017039subject
Has Abstractpub_date
2011-05-17 00:00:00pages
3891-902issue
19eissn
0006-2960issn
1520-4995journal_volume
50pub_type
杂志文章相关文献
BIOCHEMISTRY文献大全abstract::The trimeric main light-harvesting complex (LHC-II) is the only antenna complex of higher plants of which a high-resolution 3D structure has been obtained (Kühlbrandt, W., Wang, D., and Fujiyoshi, Y. (1994) Nature 367, 614-621) and which can be refolded in vitro from its components. Four different recombinant forms of...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi015875k
更新日期:2002-02-19 00:00:00
abstract::The single-stranded packaged genome (ssDNA) of bacteriophage phi X174 is shown by Raman spectroscopy to lack both the ordered phosphodiester backbone and base stacking, which are demonstrated for unpackaged, protein-free ssDNA. In solutions of moderate ionic strength, unpackaged ssDNA contains 36 +/- 7% of deoxyribosy...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00234a004
更新日期:1991-05-21 00:00:00
abstract::Most terpene synthase reactions follow Markovnikov rules for formation of high-energy carbenium ion intermediates. However, there are notable exceptions. For example, pentalenene synthase (PS) undergoes an initial anti-Markovnikov cyclization reaction followed by a 1,2-hydride shift to form an intermediate humulyl cat...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/acs.biochem.0c00518
更新日期:2020-09-08 00:00:00
abstract::We have investigated the interaction of the bisbenzimidazole derivative Hoechst 33258 with the self-complementary dodecadeoxynucleotide duplex d(GTGGAATTCCAC)2 using one-dimensional (1D) and two-dimensional (2D) proton nuclear magnetic resonance (1H NMR) spectroscopy. To monitor the extent of complex formation, we use...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00112a004
更新日期:1991-12-03 00:00:00
abstract::Pectate lyase C (pelC) was the first protein in which the parallel beta-helix structure was recognized. The unique features of parallel beta-helix-containing proteins-a relatively simple topology and unusual interactions among side chains-make pelC an interesting protein to study with respect to protein folding. In th...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi001900v
更新日期:2000-12-26 00:00:00
abstract::Myosin cross-bridge subfragment 1 (S1) is the ATP catalyzing motor protein in muscle. It consists of three domains that catalyze ATP and bind actin (catalytic), conduct energy transduction (converter), and transport the load (lever arm). Force development during contraction is thought to result from rotary lever arm m...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi002387o
更新日期:2001-04-17 00:00:00
abstract::The interaction of bleomycin A2 with DNA has been examined by fluorescence spectroscopy and proton magnetic resonance techniques. Fluorescence bands observed at 353 and 405 nm in the spectrum of bleomycin were assigned to the bithiazole and 4-aminopyrimidine rings, respectively. Quenching of bithiazole fluorescence by...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00635a021
更新日期:1977-08-09 00:00:00
abstract::Tripeptidyl peptidase II is a high molecular weight serine exopeptidase, which has been purified from rat liver and human erythrocytes. Four clones, representing 4453 bp, or 90% of the mRNA of the human enzyme, have been isolated from two different cDNA libraries. One clone, designated A2, was obtained after screening...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00215a025
更新日期:1991-01-08 00:00:00
abstract::The zinc-endopeptidase light chain of botulinum A neurotoxin undergoes autocatalytic fragmentation that is accelerated by the presence of the metal cofactor, zinc [Ahmed, S. A. et al. (2001) J. Protein Chem. 20, 221-231]. We show in this paper that >95% fragmented light chain obtained in the absence of added zinc reta...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi030062c
更新日期:2003-11-04 00:00:00
abstract::Pairing rules have been developed to predict the sequence specificity of minor groove binding polyamides containing pyrrole (Py) and imidazole (Im) amino acids. An Im/Py pair distinguishes G.C from C.G and both of these from A.T/T.A base pairs. A Py/Py pair appears not to distinguish A.T from T.A base pairs. To test t...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi960744i
更新日期:1996-09-24 00:00:00
abstract::β-2-Microglobulin (β2m) forms amyloid fibrils in the joints of patients undergoing dialysis treatment as a result of kidney failure. One of the ways in which β2m can be induced to form amyloid fibrils in vitro is via incubation with stoichiometric amounts of Cu(II). To better understand the structural changes caused b...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/acs.biochem.6b01198
更新日期:2017-02-28 00:00:00
abstract::Perturbations within the transactivation and carboxy-terminal domains of HIV-1 Rev were examined for effects on Rev responsive element (RRE) binding activities in vitro and biological activity in vivo. Binding affinities, specificities, and multimerization of the transactivation mutants M10 and Rev/Rex M10-16 on the R...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00085a028
更新日期:1993-08-31 00:00:00
abstract::Melittin is a 26-residue peptide which undergoes high-affinity calcium-dependent binding by calmodulin [Barnette, M.S., Daly, R., & Weiss, B. (1983) Biochem. Pharmacol. 32, 2929; Comte, M., Maulet, Y., & Cox, J.A. (1983) Biochem. J. 209, 269; Anderson, S.R., & Malencik, D.A. (1986) Calcium Cell Funct. 6, 1]. The resul...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00406a021
更新日期:1988-03-22 00:00:00
abstract::The Escherichia coli L-arabinose-binding protein (ABP) participates as a specific receptor in the transport of L-arabinose, D-fucose, and D-galactose through the periplasmic space. The wild-type protein binds L-arabinose about 40 times more strongly than D-fucose. A mutation of the protein at position 108 (Met-->Leu) ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00080a013
更新日期:1993-07-27 00:00:00
abstract::The interactions of Hoechst 33377 (H1) with 20 different oligomeric duplexes have been investigated via spectrofluorometric titrations and/or thermal denaturation experiments. H1 is shown to form 2:1 complexes with dsDNA binding sites of at least four contiguous A/T base pairs. H1 is also shown to possess the rare abi...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi0103415
更新日期:2001-05-29 00:00:00
abstract::The effects of urea on apomyoglobin solubility have been investigated. Apomyoglobin precipitation was found to be a thermodynamically reversible process independent of the pathway of aggregation. A liquid-solid phase diagram was constructed for the precipitation of apomyoglobin as a function of urea and protein concen...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00066a006
更新日期:1993-04-20 00:00:00
abstract::We have examined the phase partition preferences of the even chain length (n = 10-22) diacyl-3'3'-indocarbo-cyanine iodides (Cn diI) incorporated in disaturated lecithin (PC) vesicles. Two parameters were used to determine this phase preference: (i) the direction of shift of the phase transition temperature (Tm) induc...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00567a039
更新日期:1980-12-23 00:00:00
abstract::Mass spectrometry was used to identify the sites of covalent attachment of [(14)C]-17alpha-bromoacetamidopropylestradiol ([(14)C]17BAPE(2), an estradiol agonist) to the ligand-binding domain (LBD) of mouse estrogen receptor alpha (ERalpha). A glutathione S-transferase (GST)-LBD chimera protein was overexpressed in Esc...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi0205092
更新日期:2002-12-31 00:00:00
abstract::The dynamics of individual DNA molecules undergoing orthogonal field alternating gel electrophoresis (OFAGE) have been studied by use of T2 DNA molecules labeled with a dye and visualized with a fluorescence microscope. The mechanism of reorientation used by a molecule to align itself in the direction of the new ortho...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00465a036
更新日期:1990-04-03 00:00:00
abstract::Structures of several voltage-gated sodium (NaV) channels from bacteria have been determined recently, but the same feat might not be achieved for the mammalian counterparts in the near future. Thus, at present, computational studies of the mammalian NaV channels have to be performed using homology models based on the...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/acs.biochem.5b01324
更新日期:2016-03-29 00:00:00
abstract::Arginase is a binuclear manganese metalloenzyme that serves as a therapeutic target for the treatment of asthma, erectile dysfunction, and atherosclerosis. In order to better understand the molecular basis of inhibitor affinity, we have employed site-directed mutagenesis, enzyme kinetics, and X-ray crystallography to ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi801911v
更新日期:2009-01-13 00:00:00
abstract::Prosthetic groups such as heme, chlorophyll, and cobalamin (vitamin B(12)) are characterized by their branched biosynthetic pathway and unique metal insertion steps. The metal ion chelatases can be broadly classed either as single-subunit ATP-independent enzymes, such as the anaerobic cobalt chelatase and the protopor...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi9906773
更新日期:1999-08-17 00:00:00
abstract::Human liver alcohol dehydrogenase [alcohol:NAD+ oxidoreductase, EC 1.1.1.1 (ADH)] catalyzes the stereospecific oxidation of different 3 beta-hydroxy-5 beta-steroids with ranges of Km from 46 to 320 microM and values of kcat from 7.0 to 72 min-1, pH 8.5. Only the class I isozymes containing gamma-subunits, gamma 1 gamm...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00412a013
更新日期:1988-06-14 00:00:00
abstract::Oxalate:ferredoxin oxidoreductase (OOR) is an unusual member of the thiamine pyrophosphate (TPP)-dependent 2-oxoacid:ferredoxin oxidoreductase (OFOR) family in that it catalyzes the coenzyme A (CoA)-independent conversion of oxalate into 2 equivalents of carbon dioxide. This reaction is surprising because binding of C...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/acs.biochem.7b00222
更新日期:2017-06-06 00:00:00
abstract::The pH dependence of the 13C chemical shifts of the side-chain carboxyl carbons of all Asp and Glu residues in the reduced and oxidized states of human thioredoxin and in a mixed disulfide complex of human thioredoxin with a target peptide from the transcription factor NF kappa B has been investigated by multidimensio...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi952299h
更新日期:1996-01-09 00:00:00
abstract::Glycinamide ribonucleotide transformylase, the first of the two formyl group transferases of de novo purine biosynthesis requiring 10-formyltetrahydrofolate, has been purified 1500-fold, nearly to homogeneity, from the murine lymphoma cell line L5178Y. Purification of the enzyme was facilitated by the use of a gelatin...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00327a008
更新日期:1985-03-12 00:00:00
abstract::Sorcin, a 21.6 kDa cytosolic EF-hand protein which undergoes a Ca(2+)-induced translocation from cytoplasm to membranes, has been assigned to the newly defined penta EF-hand family. A molecular model of the C-terminal Ca(2+)-binding domain has been generated using as a template the X-ray coordinates of the correspondi...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi991648v
更新日期:2000-02-01 00:00:00
abstract::The collagens synthesized by Chinese hamster ovary cells have been isolated and characterized. Although these cells produce very small amounts of collagen, at least five distinct collagenous chains could be identified from radiolabeled media and cell extracts after limited pepsin digestion. Two chains were characteriz...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00262a031
更新日期:1982-09-14 00:00:00
abstract::In a large number of plant species hydroxynitrile lyases catalyze the decomposition of cyanohydrins in order to generate hydrogen cyanide upon tissue damage. Hydrogen cyanide serves as a deterrent against herbivores and fungi. In vitro hydroxynitrile lyases are proficient biocatalysts for the stereospecific synthesis ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi802162s
更新日期:2009-04-21 00:00:00
abstract::Human corticosteroid-binding globulin (CBG) forms a dimer that was isolated by gel filtration, has full binding affinity and capacity, and can be dissociated to the monomer. Monomeric CBG consists of two distinct molecular variants, which were detected by polyacrylamide gel electrophoresis in the presence and absence ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00533a010
更新日期:1982-02-16 00:00:00