Organization of supercoil domains and their reorganization by transcription.

Abstract:

:During a normal cell cycle, chromosomes are exposed to many biochemical reactions that require specific types of DNA movement. Separation forces move replicated chromosomes into separate sister cell compartments during cell division, and the contemporaneous acts of DNA replication, RNA transcription and cotranscriptional translation of membrane proteins cause specific regions of DNA to twist, writhe and expand or contract. Recent experiments indicate that a dynamic and stochastic mechanism creates supercoil DNA domains soon after DNA replication. Domain structure is subsequently reorganized by RNA transcription. Examples of transcription-dependent chromosome remodelling are also emerging from eukaryotic cell systems.

journal_name

Mol Microbiol

journal_title

Molecular microbiology

authors

Deng S,Stein RA,Higgins NP

doi

10.1111/j.1365-2958.2005.04796.x

subject

Has Abstract

pub_date

2005-09-01 00:00:00

pages

1511-21

issue

6

eissn

0950-382X

issn

1365-2958

pii

MMI4796

journal_volume

57

pub_type

杂志文章,评审
  • The antibiotic action of methylarsenite is an emergent property of microbial communities.

    abstract::Arsenic is the most ubiquitous environmental toxin. Here, we demonstrate that bacteria have evolved the ability to use arsenic to gain a competitive advantage over other bacteria at least twice. Microbes generate toxic methylarsenite (MAs(III)) by methylation of arsenite (As(III)) or reduction of methylarsenate (MAs(V...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.14169

    authors: Chen J,Yoshinaga M,Rosen BP

    更新日期:2019-02-01 00:00:00

  • Control of FimY translation and type 1 fimbrial production by the arginine tRNA encoded by fimU in Salmonella enterica serovar Typhimurium.

    abstract::Expression of type 1 fimbriae in Salmonella enterica serovar Typhimurium undergoes phase variation or alteration between a fimbriate and a non-fimbriate phenotype. This variation is known to be dependent upon environmental conditions in vitro and is thought to be a complex process involving regulation by a number of p...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2001.02430.x

    authors: Tinker JK,Clegg S

    更新日期:2001-05-01 00:00:00

  • Cellobiohydrolase A (CbhA) from the cellulolytic bacterium Cellulomonas fimi is a beta-1,4-exocellobiohydrolase analogous to Trichoderma reesei CBH II.

    abstract::The gene cbhA from the cellulolytic bacterium Cellulomonas fimi encodes a protein of 872 amino acids designated cellobiohydrolase A (CbhA). Mature CbhA contains 832 amino acid residues and has a predicted molecular mass of 85,349 Da. It is composed of five domains: an N-terminal catalytic domain, three repeated sequen...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1994.tb01030.x

    authors: Meinke A,Gilkes NR,Kwan E,Kilburn DG,Warren RA,Miller RC Jr

    更新日期:1994-05-01 00:00:00

  • Structure-function studies of Escherichia coli RnlA reveal a novel toxin structure involved in bacteriophage resistance.

    abstract::Escherichia coli RnlA-RnlB is a newly identified toxin-antitoxin (TA) system that plays a role in bacteriophage resistance. RnlA functions as a toxin with mRNA endoribonuclease activity and the cognate antitoxin RnlB inhibits RnlA toxicity in E. coli cells. Interestingly, T4 phage encodes the antitoxin Dmd, which acts...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.12409

    authors: Wei Y,Gao ZQ,Otsuka Y,Naka K,Yonesaki T,Zhang H,Dong YH

    更新日期:2013-12-01 00:00:00

  • Extensive alanine scanning reveals protein-protein and protein-DNA interaction surfaces in the global regulator FlhD from Escherichia coli.

    abstract::FlhD and FlhC are the transcriptional activators of the flagellar regulon. The heterotetrameric complex formed by these two proteins activates the transcription of the class II flagellar genes. The flagellar regulon consists not only of flagellar genes, but also of the chemotactic genes and some receptor proteins. Rec...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2001.02248.x

    authors: Campos A,Matsumura P

    更新日期:2001-02-01 00:00:00

  • Post-transcriptional regulation by distal Shine-Dalgarno sequences in the grpE-dnaK intergenic region of Streptococcus mutans.

    abstract::A unique 373 bp region (igr66) between grpE and dnaK of Streptococcus mutans lacks a promoter but is required for optimal production of DnaK. Northern blotting using probes specific to hrcA, igr66 or dnaK revealed multiple transcripts produced from the dnaK operon and 5'-RACE mapped 5' termini of multiple dnaK transcr...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.13122

    authors: Palmer SR,Burne RA

    更新日期:2015-10-01 00:00:00

  • Slow growth of Mycobacterium tuberculosis at acidic pH is regulated by phoPR and host-associated carbon sources.

    abstract::During pathogenesis, Mycobacterium tuberculosis (Mtb) colonizes environments, such as the macrophage or necrotic granuloma, that are acidic and rich in cholesterol and fatty acids. The goal of this study was to examine how acidic pH and available carbon sources interact to regulate Mtb physiology. Here we report that ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.12688

    authors: Baker JJ,Johnson BK,Abramovitch RB

    更新日期:2014-10-01 00:00:00

  • Protected environments allow parallel evolution of a bacterial pathogen in a patient subjected to long-term antibiotic therapy.

    abstract::Long-term antibiotic treatment offers a rare opportunity to study the evolution of bacteria within the same individual. The appearance of new variants has been suggested to take place via the selection of enhanced resistance in compartments of the body in which the antibiotic concentration is low. Laboratory models of...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2001.02647.x

    authors: Low AS,MacKenzie FM,Gould IM,Booth IR

    更新日期:2001-11-01 00:00:00

  • Candida glabrata environmental stress response involves Saccharomyces cerevisiae Msn2/4 orthologous transcription factors.

    abstract::We determined the genome-wide environmental stress response (ESR) expression profile of Candida glabrata, a human pathogen related to Saccharomyces cerevisiae. Despite different habitats, C. glabrata, S. cerevisiae, Schizosaccharomyces pombe and Candida albicans have a qualitatively similar ESR. We investigate the fun...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2008.06301.x

    authors: Roetzer A,Gregori C,Jennings AM,Quintin J,Ferrandon D,Butler G,Kuchler K,Ammerer G,Schüller C

    更新日期:2008-08-01 00:00:00

  • Two essential FtsH proteases control the level of the Fur repressor during iron deficiency in the cyanobacterium Synechocystis sp. PCC 6803.

    abstract::The cyanobacterium Synechocystis sp. PCC 6803 expresses four different FtsH protease subunits (FtsH1-4) that assemble into specific homo- and heterocomplexes. The FtsH2/FtsH3 complex is involved in photoprotection but the physiological roles of the other complexes, notably the essential FtsH1/FtsH3 complex, remain unc...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.12782

    authors: Krynická V,Tichý M,Krafl J,Yu J,Kaňa R,Boehm M,Nixon PJ,Komenda J

    更新日期:2014-11-01 00:00:00

  • Differential RNA elongation controls the variant surface glycoprotein gene expression sites of Trypanosoma brucei.

    abstract::The protozoan parasite Trypanosoma brucei develops antigenic variation to escape the immune response of its host. To this end, the trypanosome genome contains multiple telomeric expression sites competent for transcription of variant surface glycoprotein genes, but as a rule only a single antigen is expressed at any t...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2000.01844.x

    authors: Vanhamme L,Poelvoorde P,Pays A,Tebabi P,Van Xong H,Pays E

    更新日期:2000-04-01 00:00:00

  • The Rhodobacter capsulatus hupSLC promoter: identification of cis-regulatory elements and of trans-activating factors involved in H2 activation of hupSLC transcription.

    abstract::The [NiFe]hydrogenase of the photosynthetic bacterium Rhodobacter capsulatus is encoded by the structural hupSLC operon, the expression of which is induced by H2. H2 activation was no longer observable in chromosomal hupR mutants, an indication that HupR is implicated directly in the activation by H2 of hupS gene expr...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.1997.6291996.x

    authors: Toussaint B,de Sury d'Aspremont R,Delic-Attree I,Berchet V,Elsen S,Colbeau A,Dischert W,Lazzaroni Y,Vignais PM

    更新日期:1997-12-01 00:00:00

  • EspA, a protein secreted by enteropathogenic Escherichia coli, is required to induce signals in epithelial cells.

    abstract::Enteropathogenic Escherichia coli (EPEC) is a leading cause of infant diarrhoea. EPEC mediates several effects on host epithelial cells, including activation of signal-transduction pathways, cytoskeletal rearrangement along with pedestal and attaching/effacing lesion formation. It has been previously shown that the EP...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1996.tb02619.x

    authors: Kenny B,Lai LC,Finlay BB,Donnenberg MS

    更新日期:1996-04-01 00:00:00

  • Two discrete elements are required for the replication of a repABC plasmid: an antisense RNA and a stem-loop structure.

    abstract::The repABC replicons contain an operon encoding the initiator protein (RepC) and partitioning proteins (RepA and RepB). The latter two proteins negatively regulate the transcription of the operon. In this article we have identified two novel regulatory elements, located within the conserved repB-repC intergenic sequen...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2004.04366.x

    authors: Venkova-Canova T,Soberón NE,Ramírez-Romero MA,Cevallos MA

    更新日期:2004-12-01 00:00:00

  • A host factor absent from Lactococcus lactis subspecies lactis MG1363 is required for conjugative transposition.

    abstract::In matings between Lactococcus lactis strains, the conjugative transposons Tn916 and Tn919 are found in the chromosome of the transconjugants in the same place as in the chromosome of the donor, indicating that no transposition has occurred. In agreement with this, the frequency of L. lactis transconjugants from intra...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1991.tb01858.x

    authors: Bringel F,Van Alstine GL,Scott JR

    更新日期:1991-12-01 00:00:00

  • Ail provides multiple mechanisms of serum resistance to Yersinia pestis.

    abstract::Ail, a multifunctional outer membrane protein of Yersinia pestis, confers cell binding, Yop delivery and serum resistance activities. Resistance to complement proteins in serum is critical for the survival of Y. pestis during the septicemic stage of plague infections. Bacteria employ a variety of tactics to evade the ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.14140

    authors: Thomson JJ,Plecha SC,Krukonis ES

    更新日期:2019-01-01 00:00:00

  • An isogenic haemolysin-deficient mutant of Haemophilus ducreyi lacks the ability to produce cytopathic effects on human foreskin fibroblasts.

    abstract::The haemolysin of Haemophilus ducreyi is the newest member of the Proteus/Serratia family of pore-forming toxins. In order to assess the role of the haemolysin in virulence, we constructed an isogenic haemolysin-deficient mutant of H. ducreyi strain 35000 This strain, designated 35000-3, lacks detectable haemolytic ac...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.1996.00615.x

    authors: Palmer KL,Goldman WE,Munson RS Jr

    更新日期:1996-07-01 00:00:00

  • An unorthodox sensor protein (TorS) mediates the induction of the tor structural genes in response to trimethylamine N-oxide in Escherichia coli.

    abstract::We isolated and characterized three spontaneous mutations leading to trimethylamine N-oxide (TMAO)-independent expression of the tor operon encoding the TMAO-reductase anaerobic respiratory system in Escherichia coli. The mutations lie in a new for regulatory gene, the torS gene, which probably encodes a sensor protei...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1996.tb02648.x

    authors: Jourlin C,Bengrine A,Chippaux M,Méjean V

    更新日期:1996-06-01 00:00:00

  • Cloning and characterization of three genes (SUT1-3) encoding glucose transporters of the yeast Pichia stipitis.

    abstract::We have identified and characterized three genes, SUT1, SUT2 and SUT3, that encode glucose transporters of the yeast Pichia stipitis. When expressed in a Saccharomyces cerevisiae hxt null mutant strain that is unable to take up monosaccharides, all three proteins restored growth on glucose. Sequencing of the genes rev...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.1999.01224.x

    authors: Weierstall T,Hollenberg CP,Boles E

    更新日期:1999-02-01 00:00:00

  • A new oxidative sensing and regulation pathway mediated by the MgrA homologue SarZ in Staphylococcus aureus.

    abstract::Oxidative stress serves as an important host/environmental signal that triggers a wide range of responses from the human pathogen Staphylococcus aureus. Among these, a thiol-based oxidation sensing pathway through a global regulator MgrA controls the virulence and antibiotic resistance of the bacterium. Herein, we rep...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2008.06518.x

    authors: Chen PR,Nishida S,Poor CB,Cheng A,Bae T,Kuechenmeister L,Dunman PM,Missiakas D,He C

    更新日期:2009-01-01 00:00:00

  • Proximal and distal sites bind LuxR independently and activate expression of the Vibrio harveyi lux operon.

    abstract::The LuxR regulatory protein of Vibrio harveyi as well as the autoinducer molecule, N-(3-hydroxybutanoyl) homoserine lactone, are known to be required for expression of luminescence. Although LuxR has been implicated in the activation of the promoter of the lux operon of V. harveyi, and can bind to two distinct sites u...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1994.tb01286.x

    authors: Miyamoto CM,Smith EE,Swartzman E,Cao JG,Graham AF,Meighen EA

    更新日期:1994-10-01 00:00:00

  • Regulation of Salmonella enterica pathogenicity island 1 (SPI-1) by the LysR-type regulator LeuO.

    abstract::LeuO is a quiescent LysR-type regulator belonging to the H-NS regulon. Activation of leuO transcription represses expression of pathogenicity island 1 (SPI-1) in Salmonella enterica serovar Typhimurium and inhibits invasion of epithelial cells. Loss of HilE suppresses LeuO-mediated downregulation of SPI-1. Activation ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.12500

    authors: Espinosa E,Casadesús J

    更新日期:2014-03-01 00:00:00

  • Integration host factor affects expression of two genes at the conjugal transfer origin of plasmid R100.

    abstract::Integration host factor (IHF) binds to two sites near the origin of transfer of the conjugative antibiotic resistance plasmid, R100. DNase I footprinting shows that one site is immediately adjacent to oriT and the gene X promoter, and another is adjacent to the traM promoter. A third site, known only from retardation ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1990.tb00674.x

    authors: Dempsey WB,Fee BE

    更新日期:1990-06-01 00:00:00

  • An atypical orthologue of 6-pyruvoyltetrahydropterin synthase can provide the missing link in the folate biosynthesis pathway of malaria parasites.

    abstract::Folate metabolism in malaria parasites is a long-standing, clinical target for chemotherapy and prophylaxis. However, despite determination of the complete genome sequence of the lethal species Plasmodium falciparum, the pathway of de novo folate biosynthesis remains incomplete, as no candidate gene for dihydroneopter...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2007.06073.x

    authors: Dittrich S,Mitchell SL,Blagborough AM,Wang Q,Wang P,Sims PF,Hyde JE

    更新日期:2008-02-01 00:00:00

  • A nuclear protein in Schizosaccharomyces pombe with homology to the human tumour suppressor Fhit has decapping activity.

    abstract::A number of eukaryotic proteins are already known to orchestrate key steps of mRNA metabolism and translation via interactions with the 5' m7GpppN cap. We have characterized a new type of histidine triad (HIT) motif protein (Nhm1) that co-purifies with the cap-binding complex eIF4F of Schizosaccharomyces pombe. Nhm1 i...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.2002.03151.x

    authors: Salehi Z,Geffers L,Vilela C,Birkenhäger R,Ptushkina M,Berthelot K,Ferro M,Gaskell S,Hagan I,Stapley B,McCarthy JE

    更新日期:2002-10-01 00:00:00

  • The HypB protein from Bradyrhizobium japonicum can store nickel and is required for the nickel-dependent transcriptional regulation of hydrogenase.

    abstract::The HypB protein from Bradyrhizobium japonicum is a metal-binding GTPase required for hydrogenase expression. In-frame mutagenesis of hypB resulted in strains that were partially or completely deficient in hydrogenase expression, depending on the degree of disruption of the gene. Complete deletion of the gene yielded ...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2958.1997.3251690.x

    authors: Olson JW,Fu C,Maier RJ

    更新日期:1997-04-01 00:00:00

  • Analysis of a cloned sequence of Legionella pneumophila encoding a 38 kD metalloprotease possessing haemolytic and cytotoxic activities.

    abstract::The DNA encoding the zinc metalloprotease of Legionella pneumophila Philadelphia 1 has been isolated and expressed in Escherichia coli. This protein, which is 38,000 Daltons in size, possesses immunological and biochemical properties identical to those previously described for the purified L. pneumophila protease. Per...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.1989.tb00228.x

    authors: Quinn FD,Tompkins LS

    更新日期:1989-06-01 00:00:00

  • Spatiotemporal control of FlgZ activity impacts Pseudomonas aeruginosa flagellar motility.

    abstract::The c-di-GMP-binding effector protein FlgZ has been demonstrated to control motility in the opportunistic pathogen Pseudomonas aeruginosa and it was suggested that c-di-GMP-bound FlgZ impedes motility via its interaction with the MotCD stator. To further understand how motility is downregulated in P. aeruginosa and to...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.14236

    authors: Bense S,Bruchmann S,Steffen A,Stradal TEB,Häussler S,Düvel J

    更新日期:2019-06-01 00:00:00

  • TcpM: a novel relaxase that mediates transfer of large conjugative plasmids from Clostridium perfringens.

    abstract::Conjugative transfer of toxin and antibiotic resistance plasmids in Clostridium perfringens is mediated by the tcp conjugation locus. Surprisingly, neither a relaxase gene nor an origin of transfer (oriT) has been identified on these plasmids, which are typified by the 47 kb tetracycline resistance plasmid pCW3. The t...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/mmi.13270

    authors: Wisniewski JA,Traore DA,Bannam TL,Lyras D,Whisstock JC,Rood JI

    更新日期:2016-03-01 00:00:00

  • Requirement for RecFOR-mediated recombination in priA mutant.

    abstract::Restart of arrested replication forks is an important process and PriA, the main Escherichia coli replication restart protein, is essential for viability under any condition that increases the frequency of fork arrest. In priA mutant, replication forks are arrested by spontaneously occurring roadblocks and blocked rep...

    journal_title:Molecular microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2958.2004.03997.x

    authors: Grompone G,Sanchez N,Dusko Ehrlich S,Michel B

    更新日期:2004-04-01 00:00:00