Compound haplotypes at Xp11.23 and human population growth in Eurasia.

Abstract:

:To investigate patterns of diversity and the evolutionary history of Eurasians, we have sequenced a 2.8 kb region at Xp11.23 in a sample of African and Eurasian chromosomes. This region is in a long intron of CLCN5 and is immediately flanked by a highly variable minisatellite, DXS255, and a human-specific Ta0 LINE. Compared to Africans, Eurasians showed a marked reduction in sequence diversity. The main Euro-Asiatic haplotype seems to be the ancestral haplotype for the whole sample. Coalescent simulations, including recombination and exponential growth, indicate a median length of strong linkage disequilibrium, up to approximately 9 kb for this area. The Ka/Ks ratio between the coding sequence of human CLCN5 and its mouse orthologue is much less than 1. This implies that the region sequenced is unlikely to be under the strong influence of positive selective processes on CLCN5, mutations in which have been associated with disorders such as Dent's disease. In contrast, a scenario based on a population bottleneck and exponential growth seems a more likely explanation for the reduced diversity observed in Eurasians. Coalescent analysis and linked minisatellite diversity (which reaches a gene diversity value greater than 98% in Eurasians) suggest an estimated age of origin of the Euro-Asiatic diversity compatible with a recent out-of-Africa model for colonization of Eurasia by modern Homo sapiens.

journal_name

Ann Hum Genet

journal_title

Annals of human genetics

authors

Alonso S,Armour JA

doi

10.1046/j.1529-8817.2003.00115.x

subject

Has Abstract

pub_date

2004-09-01 00:00:00

pages

428-37

issue

Pt 5

eissn

0003-4800

issn

1469-1809

pii

AHG115

journal_volume

68

pub_type

杂志文章
  • A new alpha 1-antitrypsin mutation, Thr-Met 85, (PI Zbristol) associated with novel electrophoretic properties.

    abstract::A new AAT allele (PI Zbristol) has been discovered in a woman with an obstetric history of three perinatal deaths from fulminant liver disease and no living offspring. She and her father were both PI M1Zbristol heterozygotes. The Zbristol protein is active as a proteinase inhibitor but appeared to be deficient in the ...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1046/j.1469-1809.1997.6150385.x

    authors: Lovegrove JU,Jeremiah S,Gillett GT,Temple IK,Povey S,Whitehouse DB

    更新日期:1997-09-01 00:00:00

  • Delineation of subtelomeric deletion of the long arm of chromosome 6.

    abstract::Pure subtelomeric deletion of the long arm of chromosome 6 is rare. The frequency of this deletion accounts for approximately 0.05% of subjects with intellectual disability and developmental delay with or without dysmorphic features. Common phenotypes associated with this deletion include intellectual disability, deve...

    journal_title:Annals of human genetics

    pub_type: 杂志文章,评审

    doi:10.1111/j.1469-1809.2011.00675.x

    authors: Lee JY,Cho YH,Hallford G

    更新日期:2011-11-01 00:00:00

  • Evaluation of a restricted likelihood ratio test for mapping quantitative trait loci with extreme discordant sib pairs.

    abstract::Risch and Zhang recently proposed to use extreme discordant sib pairs for mapping quantitative trait loci. Here, it is shown that the set of genetically possible distributions of the number of marker alleles in such sib-pairs is described by two inequalities. Thus, a likelihood ratio test analogous to Holmans's possib...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1046/j.1469-1809.1998.6210075.x

    authors: Knapp M

    更新日期:1998-01-01 00:00:00

  • The genetic structure of human populations studied through short insertion-deletion polymorphisms.

    abstract::In a landmark study Rosenberg et al. (2002) analyzed human genome diversity with 377 microsatellites in the HGDP-CEPH Genome Diversity Panel and reported that the populations were structured into five geographical regions: America, Sub-Saharan Africa, East Asia, Oceania and a cluster composed of Europe, the Middle Eas...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.2006.00287.x

    authors: Bastos-Rodrigues L,Pimenta JR,Pena SD

    更新日期:2006-09-01 00:00:00

  • A possible mutation of a fluorescence polymorphism.

    abstract::The segregation of the Q-band polymorphisms in 32 families have been studied. From 90 matings in these families, there were a total of 208 offspring. In one of these offspring it could be shown that there had been a change of a fluorescent polymorphism, resulting in the loss of fluorescent intensity in the satellite o...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.1978.tb01899.x

    authors: Robinson JA,Buckton KE,Evans HJ

    更新日期:1978-01-01 00:00:00

  • Maternal and paternal lineages of the Samaritan isolate: mutation rates and time to most recent common male ancestor.

    abstract::The Samaritan community is a small, isolated, and highly endogamous group numbering some 650 members who have maintained extensive genealogical records for the past 13-15 generations. We performed mutation detection experiments on mitochondrial DNAs and Y chromosomes from confirmed maternal and paternal lineages to es...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1046/j.1469-1809.2003.00024.x

    authors: Bonné-Tamir B,Korostishevsky M,Redd AJ,Pel-Or Y,Kaplan ME,Hammer MF

    更新日期:2003-03-01 00:00:00

  • Deconstructing Jaco: genetic heritage of an Afrikaner.

    abstract::It is often assumed that Afrikaners stem from a small number of Dutch immigrants. As a result they should be genetically homogeneous, show founder effects and be rather inbred. By disentangling my own South African pedigree, that is on average 12 generations deep, I try to quantify the genetic heritage of an Afrikaner...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.2007.00363.x

    authors: Greeff JM

    更新日期:2007-09-01 00:00:00

  • A marginal likelihood model for family-based data.

    abstract::This paper presents a marginal likelihood model for family-based data based upon the transmission of marker alleles from each heterozygous parent to his/her affected children. The proposed model, extending the maximum-likelihood-binomial (MLB) method and the disequilibrium maximum-likelihood-binomial (DMLB) method (Ab...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1046/j.1469-1809.2003.00032.x

    authors: Lo SH,Liu X,Shao Y

    更新日期:2003-07-01 00:00:00

  • From a single whole exome read to notions of clinical screening: primary ciliary dyskinesia and RSPH9 p.Lys268del in the Arabian Peninsula.

    abstract::Primary ciliary dyskinesia (PCD) is a genetic disorder, usually autosomal recessive, causing early respiratory disease and later subfertility. Whole exome sequencing may enable efficient analysis for locus heterogeneous disorders such as PCD. We whole-exome-sequenced one consanguineous Saudi Arabian with clinically di...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.2012.00704.x

    authors: Alsaadi MM,Gaunt TR,Boustred CR,Guthrie PA,Liu X,Lenzi L,Rainbow L,Hall N,Alharbi KK,Day IN

    更新日期:2012-05-01 00:00:00

  • Linkage between the loci for peptidase D and cytochrome P-450 (CYP1) on chromosome 19.

    abstract::Families segregating for PEPD have been investigated for linkage between PEPD and CYP1. The results provide evidence for close linkage between PEPD and CYP1 in males. ...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.1987.tb00862.x

    authors: Davis MB

    更新日期:1987-01-01 00:00:00

  • Association study of M235T and A-6G polymorphisms in angiotensinogen gene with risk of developing preeclampsia in Iranian population.

    abstract:OBJECTIVE:Preeclampsia (PE) is a life-threatening complication of pregnancy that accounts for 12% of all maternal deaths worldwide. The aim of this study is to investigate the relationships between the polymorphisms of angiotensinogen (AGT) gene and preeclampsia. MATERIAL AND METHODS:In this study, 240 unrelated preec...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/ahg.12323

    authors: Alaee E,Mirahmadi M,Ghasemi M,Kashani E,Attar M,Shahbazi M

    更新日期:2019-11-01 00:00:00

  • Genetic polymorphism of human deoxyribonuclease II (DNase II): low activity levels in urine and leukocytes are due to an autosomal recessive allele.

    abstract::The objectives of this study were to elucidate the genetic basis of human deoxyribonuclease II (DNase II) and to evaluate its usefulness as a genetic and/or diagnostic marker. We have devised a novel, specific and highly sensitive assay method for the urinary and leukocytic enzymes (Yasuda et al. 1991). The distributi...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.1992.tb01125.x

    authors: Yasuda T,Nadano D,Sawazaki K,Kishi K

    更新日期:1992-01-01 00:00:00

  • Placentation and zygosity of twins in Northern Nigeria.

    abstract::Details of placentation and zygosity are reported from a survey of 627 consecutive twin births at three hospitals in Northern Nigeria. Zygosity was determined by study of sex, red cell antigens (ABO, MNSs and Rh) and placental enzymes (PGM1, PGM2, PGM3 and Pep A). The proportion of DZ twins amongst the various ethnic ...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.1977.tb00196.x

    authors: Nylander PP,Corney G

    更新日期:1977-01-01 00:00:00

  • De novo mutations in the BMPR2 gene in patients with heritable pulmonary arterial hypertension.

    abstract::A substantial proportion of patients with pulmonary arterial hypertension (PAH) have mutations in the Bone Morphogenetic Protein Receptor type-2 (BMPR2) gene. PAH due to BMPR2 mutations is inherited as an autosomal dominant trait with several unique features, including a wide variety of mutations, reduced penetrance, ...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/ahg.12096

    authors: Momose Y,Aimi Y,Hirayama T,Kataoka M,Ono M,Yoshino H,Satoh T,Gamou S

    更新日期:2015-03-01 00:00:00

  • F-statistics and analysis of gene diversity in subdivided populations.

    abstract::It is show that Wright's F-statistics can be defined as ratios of gene diversities of heterozygosities rather than as the correlations of uniting gametes. This definition is applicable irrespective of the number of alleles involved or whether there is selection or not. The relationship between F-statistics and Nei's g...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.1977.tb01918.x

    authors: Nei M

    更新日期:1977-10-01 00:00:00

  • A genome-wide search for non-UGT1A1 markers associated with unconjugated bilirubin level reveals significant association with a polymorphic marker near a gene of the nucleoporin family.

    abstract::Variants in the UGT1A1 gene and its promoter are known to determine levels of unconjugated bilirubin (UCB), but do not explain all cases of unconjugated hyperbilirubinemia. To discover associations with variants in genes other than UGT1A1, we undertook a genome-wide association study. We recruited 200 participants to ...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.2011.00688.x

    authors: Datta S,Chowdhury A,Ghosh M,Das K,Jha P,Colah R,Mukerji M,Majumder PP

    更新日期:2012-01-01 00:00:00

  • Mitochondrial portrait of the Cabo Verde archipelago: the Senegambian outpost of Atlantic slave trade.

    abstract::In order to study the matrilineal genetic composition in Cabo Verde (Republic of Cape Verde), an archipelago that used to serve as a Portuguese entrepôt of the Atlantic slave trade, we have analysed a total of 292 mtDNAs sampled from the seven inhabited islands for the hypervariable segment I (HVS-I) and some characte...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1017/S0003480001001002

    authors: Brehm A,Pereira L,Bandelt HJ,Prata MJ,Amorim A

    更新日期:2002-01-01 00:00:00

  • Inheritance and linkage data for an unusual combination of genes (at the LKE, PI and C6 loci) in a single large sibship.

    abstract::Analysis of the groups of a large sibship showed that the locus for the blood group LKE is not closely linked to the loci for MNS, Rh, HLA, Pi, Gm and C6 and is genetically independent of the loci for P1, K, Xg, Au, secretor, and C3. The locus for the Auberger (Au) blood group was shown to be genetically independent o...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.1988.tb01097.x

    authors: Whitehouse DB,Attwood J,Green C,Bruce M,McQuade M,Tippett P

    更新日期:1988-07-01 00:00:00

  • Case-control association tests correcting for population stratification.

    abstract::In case-control association studies unobserved population stratification may act as a confounder, leading to an increased number of false positive results. Methods accounting for population structure by using additional genetic markers broadly follow one of two concepts: Genomic Control (GC) and Structured Association...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1529-8817.2005.00214.x

    authors: Köhler K,Bickeböller H

    更新日期:2006-01-01 00:00:00

  • Using case-parent triads to estimate relative risks associated with a candidate haplotype.

    abstract::Estimating haplotype relative risks in a family-based study is complicated by phase ambiguity and the many parameters needed to quantify relative risks for all possible diplotypes. This problem becomes manageable if a particular haplotype has been implicated previously as relevant to risk. We fit log-linear models to ...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.2009.00515.x

    authors: Shi M,Umbach DM,Weinberg CR

    更新日期:2009-05-01 00:00:00

  • Evolution of the apolipoprotein B gene and coronary artery disease: a study in low and high risk Asians.

    abstract::This study traces the evolutionary pathways of the apolipoprotein B gene in the low risk Chinese and high risk Asian Indians in relation to coronary artery disease (CAD). Haplotypes were constructed from six apoB polymorphisms sp24/27, Ag(c/g), Ag(a1/d), XbaI, Ag(h/i) and, Ag(t/z). These were genotyped from 474 Chines...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1046/j.1469-1809.1999.6310045.x

    authors: Heng CK,Saha N,Low PS

    更新日期:1999-01-01 00:00:00

  • The phenotypic consequences of CFTR mutations.

    abstract::Cystic fibrosis is a common autosomal recessive disorder that primarily affects the epithelial cells in the intestine, respiratory system, pancreas, gall bladder and sweat glands. Over one thousand mutations have currently been identified in the Cystic Fibrosis Transmembrane Conductance Regulator (CFTR) gene that are ...

    journal_title:Annals of human genetics

    pub_type: 杂志文章,评审

    doi:10.1046/j.1469-1809.2003.00028.x

    authors: Rowntree RK,Harris A

    更新日期:2003-09-01 00:00:00

  • A speculative model for the Rh blood groups.

    abstract::Two closely linked structural loci, D and 'CcEe', are proposed as the basis of the Rh blood groups. Mutation and unequal crossing-over between the two loci at meiosis are considered as possible explanations for some rare Rh complexes. The theory predicts that complexes arising from unequal crossing-over would be expec...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.1986.tb01045.x

    authors: Tippett P

    更新日期:1986-07-01 00:00:00

  • A note on allelic tests in case-control association studies.

    abstract::This paper reconsiders the relevant contribution of Sasieni in the validity of allele-based tests in case-control genetic association studies. In particular, the author clearly demonstrates that the classical chi-square test applied to allelic contingency tables is biased when the combined case-control population is n...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.2008.00438.x

    authors: Guedj M,Nuel G,Prum B

    更新日期:2008-05-01 00:00:00

  • Similarities in anthropometrical traits of children and their parents in a Bulgarian population.

    abstract::A study has been made of 36 body and 11 craniofacial measurements in a selected sample of 251 Bulgarian families, comprising parents and their children over 15 years. The mid parent-offspring and correlation coefficients indicate that the extent of genetic determination varies considerably from one measurement to anot...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.1996.tb01618.x

    authors: Nikolova M

    更新日期:1996-11-01 00:00:00

  • The tissue distribution of hexosaminidase S and hexosaminidase C.

    abstract::The proportion of hex S to hex C in normal and Sandhoff's fibroblasts was determined to be between 1:1 and 1:2 by differential staining of hex S at pH 4.4 with 4-methylumbelliferyl-beta-N-acetylgalactosaminide and of hex C at pH 7.0 with 4-methylumbelliferyl-beta-N-acetylglucosaminide. Hex S and hex C were also semi-q...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.1977.tb01911.x

    authors: Beutler E,Kuhl W

    更新日期:1977-10-01 00:00:00

  • Very close linkage between D2S1 and ACP1 on chromosome 2p.

    abstract::The genomic DNA-probe L2.30 was used to assign D2S1 to 2p23-pter by in situ hybridization. The RFLP revealed by BglII was then used for linkage studies in the Oslo-NHIK families segregating for the acid phosphatase ACP1 protein polymorphism. Evidence for very close linkage was found by a lod score of +17.17 at recombi...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.1986.tb01757.x

    authors: Lothe RA,Gedde-Dahl T,Olaisen B,Bakker E,Pearson P

    更新日期:1986-10-01 00:00:00

  • Determining approximate estimates of inheritance parameters from sib-pair IBD proportions.

    abstract::The use of IBD proportions from a large set of affected sib-pair data to estimate some or all of the main parameters describing the inheritance of a disease susceptibility gene is here considered. We assume there is no recombination present and neglect ascertainment bias, and assume that there are four distinct parent...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1469-1809.1996.tb01186.x

    authors: Green JR,Shah S

    更新日期:1996-03-01 00:00:00

  • The European-specific mitochondrial cluster J/T could confer an increased risk of insulin-resistance and type 2 diabetes: an analysis of the m.4216T > C and m.4917A > G variants.

    abstract::The aims of this study were to investigate the contributions of the mitochondrial DNA m.4216T > C and m.4917A > G variants, and also of the European-specific mitochondrial cluster J/T, to the development of type 2 diabetes mellitus in Caucasian-Brazilian patients from Southern Brazil. We analyzed 347 type 2 diabetes p...

    journal_title:Annals of human genetics

    pub_type: 杂志文章,多中心研究

    doi:10.1111/j.1469-1809.2005.00249.x

    authors: Crispim D,Canani LH,Gross JL,Tschiedel B,Souto KE,Roisenberg I

    更新日期:2006-07-01 00:00:00

  • Case-parent triads: estimating single- and double-dose effects of fetal and maternal disease gene haplotypes.

    abstract::Case-parent triad data are considered a robust basis for studying association between variants of a gene and a disease. Methods evaluating statistical significance of association, like the TDT-test and its extensions, are frequently used. When there are prior hypotheses of a causal effect of the gene under study, howe...

    journal_title:Annals of human genetics

    pub_type: 杂志文章

    doi:10.1111/j.1529-8817.2005.00218.x

    authors: Gjessing HK,Lie RT

    更新日期:2006-05-01 00:00:00