A marginal likelihood model for family-based data.

Abstract:

:This paper presents a marginal likelihood model for family-based data based upon the transmission of marker alleles from each heterozygous parent to his/her affected children. The proposed model, extending the maximum-likelihood-binomial (MLB) method and the disequilibrium maximum-likelihood-binomial (DMLB) method (Abel et al. 1998; Abel & Müller-Myhsok, 1998; Huang & Jiang, 1999), is adaptive to linkage disequilibrium (LD) and linkage heterogeneity. Compared with other procedures, the likelihood ratio test (LRT) derived from the proposed model enjoys superior qualities. First, simulations indicate that the power of the LRT is greater than that of the TDT or DMLB in all of our studied scenarios. Second, when we applied the LRT and other tests to a Tourette Syndrome data, the result was data favorable to the use of the LRT. Therefore, we recommend the use of the LRT as an additional linkage test wherever applicable, especially when the amount of LD is uncertain.

journal_name

Ann Hum Genet

journal_title

Annals of human genetics

authors

Lo SH,Liu X,Shao Y

doi

10.1046/j.1469-1809.2003.00032.x

subject

Has Abstract

pub_date

2003-07-01 00:00:00

pages

357-66

issue

Pt 4

eissn

0003-4800

issn

1469-1809

pii

032

journal_volume

67

pub_type

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