当前位置： SCI文献检索 > MOLECULAR PHYLOGENETICS AND EVOLUTION期刊下所有文献 > Genome-wide SNPs clarify lineage diversity confused by coloration in coralsnakes of the Micrurus diastema species complex (Serpentes: Elapidae).

Genome-wide SNPs clarify lineage diversity confused by coloration in coralsnakes of the Micrurus diastema species complex (Serpentes: Elapidae).

Abstract：

:New world coralsnakes of the genus Micrurus are a diverse radiation of highly venomous and brightly colored snakes that range from North Carolina to Argentina. Species in this group have played central roles in developing and testing hypotheses about the evolution of mimicry and aposematism. Despite their diversity and prominence as model systems, surprisingly little is known about species boundaries and phylogenetic relationships within Micrurus, which has substantially hindered meaningful analyses of their evolutionary history. Here we use mitochondrial genes together with thousands of nuclear genomic loci obtained via ddRADseq to study the phylogenetic relationships and population genomics of a subclade of the genus Micrurus: The M. diastema species complex. Our results indicate that prior species and species-group inferences based on morphology and color pattern have grossly misguided taxonomy, and that the M. diastema complex is not monophyletic. Based on our analyses of molecular data, we infer the phylogenetic relationships among species and populations, and provide a revised taxonomy for the group. Two non-sister species-complexes with similar color patterns are recognized, the M. distans and the M. diastema complexes, the first being basal to the monadal Micrurus and the second encompassing most North American monadal taxa. We examined all 13 species, and their respective subspecies, for a total of 24 recognized taxa in the M. diastema species complex. Our analyses suggest a reduction to 10 species, with no subspecific designations warranted, to be a more likely estimate of species diversity, namely, M. apiatus, M. browni, M. diastema, M. distans, M. ephippifer, M. fulvius, M. michoacanensis, M. oliveri, M. tener, and one undescribed species.

journal_name

Mol Phylogenet Evol

journal_title

Molecular phylogenetics and evolution

authors

Reyes-Velasco J,Adams RH,Boissinot S,Parkinson CL,Campbell JA,Castoe TA,Smith EN

doi

10.1016/j.ympev.2020.106770

subject

Has Abstract

pub_date

2020-06-01 00:00:00

pages

106770

eissn

1055-7903

issn

1095-9513

pii

S1055-7903(20)30042-7

journal_volume

147

pub_type

杂志文章

相关文献

MOLECULAR PHYLOGENETICS AND EVOLUTION文献大全
  • Phylogenomics of Ichneumonoidea (Hymenoptera) and implications for evolution of mode of parasitism and viral endogenization.

    abstract：:Ichneumonoidea is one of the most diverse lineages of animals on the planet with >48,000 described species and many more undescribed. Parasitoid wasps of this superfamily are mostly beneficial insects that attack and kill other arthropods and are important for understanding diversification and the evolution of life hi...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2020.107023

    authors： Sharanowski BJ,Ridenbaugh RD,Piekarski PK,Broad GR,Burke GR,Deans AR,Lemmon AR,Moriarty Lemmon EC,Diehl GJ,Whitfield JB,Hines HM

    更新日期：2021-03-01 00:00:00

  • Phylogeny of Celastraceae subfamily Hippocrateoideae inferred from morphological characters and nuclear and plastid loci.

    abstract：:The phylogeny of Celastraceae subfamily Hippocrateoideae (∼ 100 species and 19 genera in the Old and New World tropics) was inferred using morphological characters together with plastid (matK, trnL-F) and nuclear (ITS and 26S rDNA) genes. The subfamily is easily recognized by the synapomorphies of transversely flatten...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2011.02.017

    authors： Coughenour JM,Simmons MP,Lombardi JA,Yakobson K,Archer RH

    更新日期：2011-05-01 00:00:00

  • Phylogeographic patterns in the Australasian genus Chionohebe (Veronica s.l., Plantaginaceae) based on AFLP and chloroplast DNA sequences.

    abstract：:The alpine genus Chionohebe is one of seven genera in the southern hemisphere Hebe complex. The main aims of this study were to infer the evolutionary relationships and assess phylogeographic patterns among the six species of Chionohebe, determine the origin of the two species with trans-Tasman distributions, and test...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2007.12.019

    authors： Meudt HM,Bayly MJ

    更新日期：2008-04-01 00:00:00

  • Parallel diversification of Australian gall-thrips on Acacia.

    abstract：:The diversification of gall-inducing Australian Kladothrips (Insecta: Thysanoptera) on Acacia has produced a pair of sister-clades, each of which includes a suite of lineages that utilize virtually the same set of 15 closely related host plant species. This pattern of parallel insect-host plant radiation may be driven...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2007.03.007

    authors： McLeish MJ,Crespi BJ,Chapman TW,Schwarz MP

    更新日期：2007-06-01 00:00:00

  • Mysteries of host switching: Diversification and host specificity in rodent-coccidia associations.

    abstract：:Recent studies show that host switching is much more frequent than originally believed and constitutes an important driver in evolution of host-parasite associations. However, its frequency and ecological mechanisms at the population level have been rarely investigated. We address this issue by analyzing phylogeny and...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2018.05.009

    authors： Mácová A,Hoblíková A,Hypša V,Stanko M,Martinů J,Kvičerová J

    更新日期：2018-10-01 00:00:00

  • Historical biogeography and speciation in the reef fish genus Haemulon (Teleostei: Haemulidae).

    abstract：:The high biodiversity of tropical marine hotspots has long intrigued evolutionary biologists and biogeographers. The genus Haemulon (grunts) is one of the most important (numerically, ecologically, and economically) reef fish groups in the New World and an excellent candidate to test hypotheses of speciation and diver...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2008.05.024

    authors： Rocha LA,Lindeman KC,Rocha CR,Lessios HA

    更新日期：2008-09-01 00:00:00

  • Nuclear and mitochondrial DNA evidence of polyphyly in the avian superfamily Muscicapoidea.

    abstract：:Nucleotide sequences of the nuclear c-mos gene and the mitochondrial cytochrome b and ND2 genes were used to assess the monophyly of Sibley and Monroe's [Distribution and Taxonomy of Birds of the World, Yale University Press, New Haven, 1990] Muscicapoidea superfamily. The relationships and monophyly of major lineages...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/s1055-7903(03)00191-x

    authors： Voelker G,Spellman GM

    更新日期：2004-02-01 00:00:00

  • Phylogenetic relationships of catostomid fishes (Actinopterygii: Cypriniformes) based on mitochondrial ND4/ND5 gene sequences.

    abstract：:Family Catostomidae is a diverse group of benthic freshwater fishes that are distributed across North America and in parts of East Asia. In this study, the phylogenetic relationships of Catostomidae is examined using 3436 nucleotides of mitochondrial ND4 and ND5 protein coding genes and intervening tRNAs. All 13 gener...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2009.06.006

    authors： Doosey MH,Bart HL Jr,Saitoh K,Miya M

    更新日期：2010-03-01 00:00:00

  • Evolutionary relationships within the fungi: analyses of nuclear small subunit rRNA sequences.

    abstract：:Nucleotide sequences of the small subunit ribosomal RNA (18S) gene were used to investigate evolutionary relationships within the Fungi. The inferred tree topologies are in general agreement with traditional classifications in the following ways: (1) the Chytridiomycota and Zygomycota appear to be basal groups within ...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/1055-7903(92)90020-h

    authors： Bruns TD,Vilgalys R,Barns SM,Gonzalez D,Hibbett DS,Lane DJ,Simon L,Stickel S,Szaro TM,Weisburg WG

    更新日期：1992-09-01 00:00:00

  • Aquatic long-distance dispersal and vicariance shape the evolution of an ostracod species complex (Crustacea) in four major Brazilian floodplains.

    abstract：:Cladogenesis is often driven by the interplay of dispersal and vicariance. The importance of long-distance dispersal in biogeography and speciation is increasingly recognised, but still ill-understood. Here, we study faunal interconnectivity between four large Brazilian floodplains, namely the Amazon, Araguaia, Pantan...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2017.12.019

    authors： Schön I,Higuti J,Patel T,Martens K

    更新日期：2018-04-01 00:00:00

  • Hunting the wolf: A molecular phylogeny of the wolf spiders (Araneae, Lycosidae).

    abstract：:Lycosids are a diverse family of spiders distributed worldwide. Previous studies recovered some of the deeper splits of the family, but with little support. We present a broad phylogenetic analysis of the Lycosidae including a wide geographic sampling of representatives and all the subfamilies described to date. Addit...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2019.04.004

    authors： Piacentini LN,Ramírez MJ

    更新日期：2019-07-01 00:00:00

  • Molecular phylogeny of the Southeast Asian freshwater fish family Botiidae (Teleostei: Cobitoidea) and the origin of polyploidy in their evolution.

    abstract：:The freshwater fish family Botiidae is represented by seven genera on the Indian subcontinent and in East and Southeast Asia and includes diploid as well as evolutionary tetraploid species. We present a phylogeny of Botiidae including 33 species representing all described genera using the mitochondrial cytochrome b an...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2005.09.018

    authors： Slechtová V,Bohlen J,Freyhof J,Ráb P

    更新日期：2006-05-01 00:00:00

  • Evidence of a highly complex phylogeographic structure on a specialist river bird species, the dipper (Cinclus cinclus).

    abstract：:This study details the phylogeographic pattern of the white-throated dipper (Cinclus cinclus), a Palearctic, temperate, passerine bird that is exclusively associated with flowing water. Our results reveal a complex phylogeographic structure with at least five distinct lineages for the Western Palearctic region. As for...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2008.07.025

    authors： Hourlay F,Libois R,D'Amico F,Sarà M,O'Halloran J,Michaux JR

    更新日期：2008-11-01 00:00:00

  • Acrobat ants go global--origin, evolution and systematics of the genus Crematogaster (Hymenoptera: Formicidae).

    abstract：:This study unravels the evolution and biogeographic history of the globally distributed ant genus Crematogaster on the basis of a molecular phylogeny, reconstructed from five nuclear protein-coding genes and a total of 3384 bp of sequence data. A particular emphasis is placed on the evolutionary history of these ants ...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2012.06.028

    authors： Blaimer BB

    更新日期：2012-11-01 00:00:00

  • Phylogeny and systematics of Chiroxiphia and Antilophia manakins (Aves, Pipridae).

    abstract：:Chiroxiphia and Antilophia manakins are recognized as closely related genera. Nonetheless, Chiroxiphia has been recovered as paraphyletic in some studies with limited taxonomic coverage. This genus currently comprises five species, although this arrangement is still unsettled. Chiroxiphia pareola is the most widesprea...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2018.06.016

    authors： Silva SM,Agne CE,Aleixo A,Bonatto SL

    更新日期：2018-10-01 00:00:00

  • Origin of the 1918 Spanish influenza virus: a comparative genomic analysis.

    abstract：:To test the avian-origin hypothesis of the 1918 Spanish influenza virus we surveyed influenza sequences from a broad taxonomic distribution and collected 65 full-length genomes representing avian, human and "classic" swine H1N1 lineages in addition to numerous other swine (H1N2, H3N1, and H3N2), human (H2N2, H3N2, and...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2008.02.003

    authors： Vana G,Westover KM

    更新日期：2008-06-01 00:00:00

  • Phylogeography of the ancient catfish family Diplomystidae: biogeographic, systematic, and conservation implications.

    abstract：:The catfish family Diplomystidae is one of the earliest branching lineages within the diverse order Siluriformes and shows a deep phylogenetic split from all other extant and extinct major catfish groups. Despite its relevance in the evolution of siluriforms, phylogenetic relationships within the Diplomystidae are poo...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2014.01.015

    authors： Muñoz-Ramírez CP,Unmack PJ,Habit E,Johnson JB,Cussac VE,Victoriano P

    更新日期：2014-04-01 00:00:00

  • Parsimony analysis as a specific kind of homology estimation and the implications for character weighting.

    abstract：:"Remane-Hennigian systematists" still reject parsimony analysis for phylogenetics, because homology or apomorphy analyses are not included. In contrast, "pattern cladists" regard homology as a deductive concept after applying a parsimony test of character congruence. However, as in molecular phylogeny, selection of "g...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1006/mpev.1998.0496

    authors： Haszprunar G

    更新日期：1998-06-01 00:00:00

  • The evolutionary history of seahorses (Syngnathidae: Hippocampus): molecular data suggest a West Pacific origin and two invasions of the Atlantic Ocean.

    abstract：:Sequence data derived from four markers (the nuclear RP1 and Aldolase and the mitochondrial 16S rRNA and cytochrome b genes) were used to determine the phylogenetic relationships among 32 species belonging to the genus Hippocampus. There were marked differences in the rate of evolution among these gene fragments, with...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/s1055-7903(03)00214-8

    authors： Teske PR,Cherry MI,Matthee CA

    更新日期：2004-02-01 00:00:00

  • Ancestral lineages of arbuscular mycorrhizal fungi (Glomales).

    abstract：:Using new and existing 18S rRNA sequence data, we show that at least five species of glomalean fungi lie outside the previously defined families and diverged very early in the evolution of that group. These five fungi would have been missed by many previous ecological studies because their sequences are not well match...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1006/mpev.1999.0713

    authors： Redecker D,Morton JB,Bruns TD

    更新日期：2000-02-01 00:00:00

  • Analysis of the complete mitochondrial DNA from Anopheles funestus: an improved dipteran mitochondrial genome annotation and a temporal dimension of mosquito evolution.

    abstract：:Virtually no information regarding timing of deep lineage divergences within mosquito family (Culicidae) exists, which poses an important problem in the postgenomic era. To address this issue, the complete 15,354 bp mitochondrial genome of Anopheles funestus was assembled from both mtDNA and cDNA sequences generated f...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2006.01.006

    authors： Krzywinski J,Grushko OG,Besansky NJ

    更新日期：2006-05-01 00:00:00

  • The genetic signature of recent speciation in manta rays (Manta alfredi and M. birostris).

    abstract：:Manta rays have been taxonomically revised as two species, Manta alfredi and M. birostris, on the basis of morphological and meristic data, yet the two species occur in extensive mosaic sympatry. We analysed the genetic signatures of the species boundary using a portion of the nuclear RAG1 (681 base pairs), mitochondr...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2012.03.020

    authors： Kashiwagi T,Marshall AD,Bennett MB,Ovenden JR

    更新日期：2012-07-01 00:00:00

  • South Asia supports a major endemic radiation of Hemidactylus geckos.

    abstract：:Hemidactylus geckos are a species-rich component of many tropical lizard assemblages. We sampled deeply among tropical Asian, and especially South Asian, taxa and used a multi-gene approach to establish the affinities of Indian and Sri Lankan Hemidactylus and to evaluate the monophyly of previously proposed taxa withi...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2010.06.014

    authors： Bauer AM,Jackman TR,Greenbaum E,Giri VB,de Silva A

    更新日期：2010-10-01 00:00:00

  • Phylogeny of Lasius ants based on mitochondrial DNA and morphology, and the evolution of social parasitism in the Lasiini (Hymenoptera: Formicidae).

    abstract：:Phylogeny of ants of the tribe Lasiini (Lasius, Acanthomyops, Prenolepis, Euprenolepis, Paratrechina, Pseudolasius, and Myrmecocystus) was analysed using 81 morphological, ecological, and behavioural characters (for 41 species) and mitochondrial DNA sequences (COI, COII, tRNA-Leu; for 19 species). The free-living subg...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2004.07.012

    authors： Janda M,Folková D,Zrzavý J

    更新日期：2004-12-01 00:00:00

  • Identification of a positively evolving putative binding region with increased variability in posttranslational motifs in zonadhesin MAM domain 2.

    abstract：:Positive selection has been shown to be pervasive in sex-related proteins of many metazoan taxa. However, we are only beginning to understand molecular evolutionary processes on the lineage to humans. To elucidate the evolution of proteins involved in human reproduction, we studied the sequence evolution of MAM domain...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2005.04.001

    authors： Herlyn H,Zischler H

    更新日期：2005-10-01 00:00:00

  • The role of repeated sea-level fluctuations in the generation of shrew (Soricidae: Crocidura) diversity in the Philippine Archipelago.

    abstract：:Repeated sea-level fluctuations during and prior to the Pleistocene had a dramatic effect on the distribution of land and connection among islands between the Asian and Australian continents. These cycles of connection and isolation have long been recognized as an important factor determining the distribution and orga...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2009.05.034

    authors： Esselstyn JA,Brown RM

    更新日期：2009-10-01 00:00:00

  • Return flight to the Canary Islands--the key role of peripheral populations of Afrocanarian blue tits (Aves: Cyanistes teneriffae) in multi-gene reconstructions of colonization pathways.

    abstract：:Afrocanarian blue tits (Cyanistes teneriffae) have a scattered distribution on the Canary Islands and on the North African continent. To date, the Canary Islands have been considered the species' main Pleistocene evolutionary center, but their colonization pathways remain uncertain. We set out to reconstruct a dated m...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2013.02.010

    authors： Päckert M,Martens J,Hering J,Kvist L,Illera JC

    更新日期：2013-05-01 00:00:00

  • Molecular phylogeny of some European heteronemertean (Nemertea) species and the monophyletic status of Riseriellus, Lineus, and Micrura.

    abstract：:The 16S rRNA mitochondrial gene was used to reconstruct the relationships among 10 heteronemertean species (subclass Heteronemertea, phylum Nemertea); Lineus ruber and L. viridis are represented by more than one specimen to assess intraspecific variation in these enigmatic species, and the analysis includes in total 1...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1006/mpev.1998.0543

    authors： Sundberg P,Saur M

    更新日期：1998-12-01 00:00:00

  • On the classification, evolution and biogeography of terrestrial haemadipsoid leeches (Hirudinida: Arhynchobdellida: Hirudiniformes).

    abstract：:A scourge of tropical and subtropical jungles, bloodfeeding terrestrial leeches of Haemadipsidae have long confused systematists and defied sensible biogeographic interpretation. The family Haemadipsidae usually includes problematic taxa that neither fit the typical IndoPacific distribution of the group, nor properly ...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2007.09.006

    authors： Borda E,Oceguera-Figueroa A,Siddall ME

    更新日期：2008-01-01 00:00:00

  • Concordant species delimitation from multiple independent evidence: A case study with the Pachytriton brevipes complex (Caudata: Salamandridae).

    abstract：:Mitochondrial DNA (mtDNA) sequence data are widely used to delimit species. However, owing to its strict maternal inheritance in most species, mtDNA tracks female dispersion and dispersal only. The accuracy of mtDNA-derived species delimitation is often not explicitly tested using other independent evidence, such as n...

    journal_title：Molecular phylogenetics and evolution

    pub_type： 杂志文章

    doi：10.1016/j.ympev.2015.06.010

    authors： Wu Y,Murphy RW

    更新日期：2015-11-01 00:00:00