Evidence of a highly complex phylogeographic structure on a specialist river bird species, the dipper (Cinclus cinclus).

Abstract:

:This study details the phylogeographic pattern of the white-throated dipper (Cinclus cinclus), a Palearctic, temperate, passerine bird that is exclusively associated with flowing water. Our results reveal a complex phylogeographic structure with at least five distinct lineages for the Western Palearctic region. As for many species of the Western Palearctic fauna and flora, this genetic structure is probably linked to the isolation of populations in different southern refuges during glacial periods. Furthermore, the isolation of populations in Scandinavia and/or Eastern regions, but also in Morocco and probably in Corsica, was accentuated by ecological and biogeographic barriers during Quaternary interglacial periods. During glacial periods, Italy, Sicily and the Balkano-Carpathian region acted as major refuge zones for the dipper. At the end of the last ice age, Western Europe was repopulated by dippers from an Italian refuge, while Eastern Europe was recolonised by Balkano-Carpathian birds. A large contact zone between these two lineages was evidenced and extends from Luxembourg to Hungary. Finally, our results indicate the need to clarify the taxonomic status of the dipper, especially concerning the European subspecies whose validity appears uncertain.

journal_name

Mol Phylogenet Evol

authors

Hourlay F,Libois R,D'Amico F,Sarà M,O'Halloran J,Michaux JR

doi

10.1016/j.ympev.2008.07.025

subject

Has Abstract

pub_date

2008-11-01 00:00:00

pages

435-44

issue

2

eissn

1055-7903

issn

1095-9513

pii

S1055-7903(08)00381-3

journal_volume

49

pub_type

杂志文章
  • Multilocus species-delimitation in the Xerotyphlops vermicularis (Reptilia: Typhlopidae) species complex.

    abstract::Scolecophidia (worm snakes) are a vertebrate group with high ecomorphological conservatism due to their burrowing lifestyle. The Eurasian or Greek blindsnake Xerotyphlops vermicularis is their only European representative, a species-complex with an old diversification history. However, its systematics and taxonomy has...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2020.106922

    authors: Kornilios P,Jablonski D,Sadek RA,Kumlutaş Y,Olgun K,Avci A,Ilgaz C

    更新日期:2020-11-01 00:00:00

  • Resolving the phylogenetic relationships and evolutionary history of the Drosophila virilis group using multilocus data.

    abstract::The Drosophila virilis group is one of the major lineages of Drosophila previously recognised and it has been used as a model for different types of studies. It comprises 13 species whose phylogenetic relationships are not well resolved. In the present study, six nuclear genes (Adh, fused, Gpdh, NonA, CG9631 and CG721...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2011.04.022

    authors: Morales-Hojas R,Reis M,Vieira CP,Vieira J

    更新日期:2011-08-01 00:00:00

  • Gene conversion generates hypervariability at the variable regions of kallikreins and their inhibitors.

    abstract::The two mechanisms for generating hypervariability at the reactive center of serine proteases and their inhibitors are gene conversion followed by natural selection and natural selection for point mutation. One way to clarify the effects of these two mechanisms is to calculate separately the number of nonsynonymous su...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/1055-7903(92)90022-9

    authors: Ohta T,Basten CJ

    更新日期:1992-06-01 00:00:00

  • Multilocus phylogeny and phylogenomics of Eriochrysis P. Beauv. (Poaceae-Andropogoneae): Taxonomic implications and evidence of interspecific hybridization.

    abstract::Species delimitation is a vital issue concerning evolutionary biology and conservation of biodiversity. However, it is a challenging task for several reasons, including the low interspecies variability of markers currently used in phylogenetic reconstructions and the occurrence of reticulate evolution and polyploidy i...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2016.02.022

    authors: Welker CAD,Souza-Chies TT,Longhi-Wagner HM,Peichoto MC,McKain MR,Kellogg EA

    更新日期:2016-06-01 00:00:00

  • Insights into Himalayan biogeography from geckos: a molecular phylogeny of Cyrtodactylus (Squamata: Gekkonidae).

    abstract::The India-Asia collision profoundly influenced the climate, topography and biodiversity of Asia, causing the formation of the biodiverse Himalayas. The species-rich gekkonid genus Cyrtodactylus is an ideal clade for exploring the biological impacts of the India-Asia collision, as previous phylogenetic hypotheses sugge...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2014.07.018

    authors: Agarwal I,Bauer AM,Jackman TR,Karanth KP

    更新日期:2014-11-01 00:00:00

  • Homoplasious colony morphology and mito-nuclear phylogenetic discordance among Eastern Pacific octocorals.

    abstract::Octocorals are a diverse and ecologically important group of cnidarians. However, the phylogenetic relationships of many octocoral groups are not well understood and are based mostly on mitochondrial sequence data. In addition, the discovery and description of new gorgonian species displaying unusual or intermediate m...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2016.02.023

    authors: Ament-Velásquez SL,Breedy O,Cortés J,Guzman HM,Wörheide G,Vargas S

    更新日期:2016-05-01 00:00:00

  • Arnica (Asteraceae) phylogeny revisited using RPB2: complex patterns and multiple d-paralogues.

    abstract::The region coding for the second largest subunit of RNA polymerase II (RPB2) was explored for resolving interspecific relationships in Arnica and lower level taxa in general. The region between exons 17 and 23 was cloned and sequenced for 33 accessions of Arnica and four outgroup taxa. Three paralogues of the RPB2-d c...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2012.02.032

    authors: Ekenäs C,Heidari N,Andreasen K

    更新日期:2012-08-01 00:00:00

  • Molecular phylogeny of land and freshwater planarians (Tricladida, Platyhelminthes): from freshwater to land and back.

    abstract::The suborder Tricladida (phylum Platyhelminthes) comprises the well-known free-living flatworms, taxonomically grouped into three infraorders according to their ecology: Maricola (marine planarians), Paludicola (freshwater planarians), and Terricola (land planarians). Molecular analyses have demonstrated that the Palu...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2008.01.032

    authors: Alvarez-Presas M,Baguñà J,Riutort M

    更新日期:2008-05-01 00:00:00

  • Origin and diversification of the clawed lobster genus Metanephrops (Crustacea: Decapoda: Nephropidae).

    abstract::A phylogenetic analysis of all 17 extant species of the clawed lobster genus Metanephrops based on mitochondrial 12S rRNA, 16S rRNA and cytochrome c oxidase I, and nuclear histone H3 gene sequences supports the morphological groupings of two of the traditional groups of the genus (the binghami and japonicus groups) bu...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2008.11.020

    authors: Chan TY,Ho KC,Li CP,Chu KH

    更新日期:2009-03-01 00:00:00

  • Systematics, biogeography and evolution of the Saharo-Arabian naked-toed geckos genus Tropiocolotes.

    abstract::Plate tectonics constitute one of the main mechanisms of biological diversification on Earth, often being associated with cladogenetic events at different phylogenetic levels, as well as with exchange of faunas and floras across previously isolated biogeographic regions. North Africa and Arabia share a complex geologi...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2020.106969

    authors: Machado L,Salvi D,James Harris D,Brito JC,Crochet PA,Geniez P,Ahmadzadeh F,Carranza S

    更新日期:2021-02-01 00:00:00

  • Molecular phylogeny and biogeography of the weevil subfamily Platypodinae reveals evolutionarily conserved range patterns.

    abstract::Platypodinae is a peculiar weevil subfamily of species that cultivate fungi in tunnels excavated in dead wood. Their geographical distribution is generally restricted, with genera confined to a single continent or large island, which provides a useful system for biogeographical research. This study establishes the fir...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2015.05.028

    authors: Jordal BH

    更新日期:2015-11-01 00:00:00

  • Molecular phylogeny of hybridizing species from the genus Spartina Schreb. (Poaceae).

    abstract::Interspecific hybridization events have been reported in the genus Spartina Schreb. (Poaceae), involving the east American species Spartina alterniflora, and including either introgression (e.g., with the western American Spartina foliosa) or allopolyploid speciation (e.g., with the Euro-African Spartina maritima). Mo...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1006/mpev.2001.1064

    authors: Baumel A,Ainouche ML,Bayer RJ,Ainouche AK,Misset MT

    更新日期:2002-02-01 00:00:00

  • Molecular genetic analysis and ecological evidence reveals multiple cryptic species among thynnine wasp pollinators of sexually deceptive orchids.

    abstract::Sexually deceptive Chiloglottis orchids lure their male thynnine wasp pollinators to the flower by emitting semiochemicals that mimic the specific sex pheromone of the wasp. Sexual deception is possible because chemical rather than visual cues play the key role in wasp mate search, suggesting that cryptic wasp species...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2011.02.004

    authors: Griffiths KE,Trueman JW,Brown GR,Peakall R

    更新日期:2011-04-01 00:00:00

  • Distinct Bradyrhizobium [corrected] communities nodulate legumes native to temperate and tropical monsoon Australia.

    abstract::Geographic isolation and growing climate aridity played major roles in the evolution of Australian legumes. It is likely that these two factors also impacted on the evolution of their root-nodule bacteria. To investigate this issue, we applied a multilocus sequence analysis (MLSA) approach to examine Bradyrhizobium is...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2011.12.020

    authors: Stępkowski T,Watkin E,McInnes A,Gurda D,Gracz J,Steenkamp ET

    更新日期:2012-05-01 00:00:00

  • Phylogeny of the Polytrichales (Bryophyta) based on simultaneous analysis of molecular and morphological data.

    abstract::Phylogenetic analyses of Polytrichales were conducted using morphology and sequence data from the chloroplast genes rbcL and rps4 plus the trnL-F gene region, part of the mitochondrial nad5 and the nuclear-encoded 18S rDNA. Our analyses included 46 species representing all genera of Polytrichales. Phylogenetic trees w...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2003.11.003

    authors: Hyvönen J,Koskinen S,Merrill GL,Hedderson TA,Stenroos S

    更新日期:2004-06-01 00:00:00

  • The Cryptocercus punctulatus species complex (Dictyoptera: Cryptocercidae) in the eastern United States: comparison of cuticular hydrocarbons, chromosome number, and DNA sequences.

    abstract::The goal of the current study was to determine if cuticular hydrocarbons could be used to empirically delimit taxa within the Cryptocercus punctulatus species complex in the eastern United States. Cockroaches were collected from rotting logs in 22 locations across four states. Hydrocarbon phenotypes and two mitochondr...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2008.03.011

    authors: Everaerts C,Maekawa K,Farine JP,Shimada K,Luykx P,Brossut R,Nalepa CA

    更新日期:2008-06-01 00:00:00

  • Molecular markers reveal genetic isolation and phylogeography of the S and F intersterility groups of the wood-decay fungus Heterobasidion annosum.

    abstract::The root-rot fungus Heterobasidion annosum (Fr.) Bref. species complex consists of three intersterility groups (S, F, and P), separated by their host affinity. The phylogenetic relationship of the species complex was studied, with the focus on the S and F groups, by comparing DNA sequences of four nuclear gene fragmen...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/s1055-7903(03)00087-3

    authors: Johannesson H,Stenlid J

    更新日期:2003-10-01 00:00:00

  • A comprehensive molecular phylogeny of spoon worms (Echiura, Annelida): Implications for morphological evolution, the origin of dwarf males, and habitat shifts.

    abstract::Echiurans (spoon worms) are derived annelids that have secondarily lost segmentation. Recently, two molecular phylogenetic studies were performed to resolve the interfamily relationship of echiurans. However, the tree topologies were incongruent and taxon sampling was limited in both the studies. Thus, the phylogeneti...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2016.03.003

    authors: Goto R

    更新日期:2016-06-01 00:00:00

  • Amplified fragment length polymorphism fingerprinting of 16 banana cultivars (Musa cvs.).

    abstract::Banana is one of the most important subtropical crops. The genetic system, however, is relatively unknown and is complicated by specific interhybridization, heterozygosity, and polyploidy, which are common in most clones. These factors make identification of closely related banana cultivars difficult, particularly whe...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1006/mpev.2000.0848

    authors: Loh JP,Kiew R,Set O,Gan LH,Gan YY

    更新日期:2000-12-01 00:00:00

  • The tempo and mode of barnacle evolution.

    abstract::Previous phylogenetic attempts at resolving barnacle evolutionary relationships are few and have relied on limited taxon sampling. Here we combine DNA sequences from three nuclear genes (18S, 28S and H3) and 44 morphological characters collected from 76 thoracican (ingroup) and 15 rhizocephalan (outgroup) species repr...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2007.10.004

    authors: Pérez-Losada M,Harp M,Høeg JT,Achituv Y,Jones D,Watanabe H,Crandall KA

    更新日期:2008-01-01 00:00:00

  • The complete mitochondrial DNA sequence of the white rhinoceros, Ceratotherium simum, and comparison with the mtDNA sequence of the Indian rhinoceros, Rhinoceros unicornis.

    abstract::The complete nucleotide sequence of the mitochondrial genome of the white rhinoceros, Ceratotherium simum, was determined. The length of the reported sequence is 16,832 nucleotides. This length can vary, however, due to pronounced heteroplasmy caused by differing numbers of a repetitive motif (5'-CG-CATATACA-3') in th...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1006/mpev.1996.0385

    authors: Xu X,Arnason U

    更新日期:1997-04-01 00:00:00

  • Molecular phylogenetics and biogeography of the ambush bugs (Hemiptera: Reduviidae: Phymatinae).

    abstract::The ambush bugs (Heteroptera: Reduviidae: Phymatinae) are a diverse clade of predators known for their cryptic hunting behavior and morphologically diverse raptorial forelegs. Despite their striking appearance, role as pollinator predators, and intriguing biogeographic distribution, phylogenetic relationships within P...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2017.06.010

    authors: Masonick P,Michael A,Frankenberg S,Rabitsch W,Weirauch C

    更新日期:2017-09-01 00:00:00

  • Molecular phylogeny and intra- and intercontinental biogeography of Calycanthaceae.

    abstract::Based on nuclear and chloroplast sequences we resolve species relationships in Calycanthaceae and develop a biogeographic hypothesis that explains their intercontinental disjunctions and intra-continental diversification in eastern Asia. Fossil-calibrated penalized likelihood and Bayesian divergence time estimates ind...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2006.01.015

    authors: Zhou S,Renner SS,Wen J

    更新日期:2006-04-01 00:00:00

  • The evolutionary history of seahorses (Syngnathidae: Hippocampus): molecular data suggest a West Pacific origin and two invasions of the Atlantic Ocean.

    abstract::Sequence data derived from four markers (the nuclear RP1 and Aldolase and the mitochondrial 16S rRNA and cytochrome b genes) were used to determine the phylogenetic relationships among 32 species belonging to the genus Hippocampus. There were marked differences in the rate of evolution among these gene fragments, with...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/s1055-7903(03)00214-8

    authors: Teske PR,Cherry MI,Matthee CA

    更新日期:2004-02-01 00:00:00

  • Introgressive hybridisation between two widespread sharks in the east Pacific region.

    abstract::With just a handful of documented cases of hybridisation in cartilaginous fishes, shark hybridisation remains poorly investigated. Small amounts of admixture have been detected between Galapagos (Carcharhinus galapagensis) and dusky (Carcharhinus obscurus) sharks previously, generating a hypothesis of ongoing hybridis...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2019.04.013

    authors: Pazmiño DA,van Herderden L,Simpfendorfer CA,Junge C,Donnellan SC,Hoyos-Padilla EM,Duffy CAJ,Huveneers C,Gillanders BM,Butcher PA,Maes GE

    更新日期:2019-07-01 00:00:00

  • Phylogeny, phylogeography, and evolution in the Mediterranean region: News from a freshwater mussel (Potomida, Unionida).

    abstract::The Potomida genus (Bivalvia, Unionida) has a Circum-Mediterranean distribution and like other freshwater mussel species, its populations have suffered dramatic declines. Although this genus is currently considered as monotypic, it has a long history of taxonomic revisions and presently many aspects of its systematics...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2016.04.030

    authors: Froufe E,Prié V,Faria J,Ghamizi M,Gonçalves DV,Gürlek ME,Karaouzas I,Kebapçi Ü,Şereflişan H,Sobral C,Sousa R,Teixeira A,Varandas S,Zogaris S,Lopes-Lima M

    更新日期:2016-07-01 00:00:00

  • Systematics of snow voles (Chionomys, Arvicolinae) revisited.

    abstract::To elucidate the evolutionary history of snow voles, genus Chionomys, we studied the phylogeography of Chionomysnivalis across its range and investigated its relationships with two congeneric species, Chionomysgud and Chionomysroberti, using independent molecular markers. Analyses were based on mitochondrial (~940 bp ...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2011.12.004

    authors: Yannic G,Burri R,Malikov VG,Vogel P

    更新日期:2012-03-01 00:00:00

  • Insulin-like growth factor II intron sequences support the hominoid rate-slowdown hypothesis.

    abstract::Nucleotide sequences were obtained from the approximately 1.7 kb intron 7 of the insulin-like growth factor II gene in human and representatives of both Old World and New World monkeys and analyzed with additional published noncoding regions (both introns and flanking regions) that differ substantially in base composi...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1006/mpev.1993.1030

    authors: Ellsworth DL,Hewett-Emmett D,Li WH

    更新日期:1993-12-01 00:00:00

  • Characterization of histone H3/H4 gene region and phylogenetic affinity of Ichthyophthirius multifiliis based on H4 DNA sequence variation.

    abstract::We sequenced the amino-terminal third of the histone H3 and H4 genes and the intergenic region from Ichthyophthirius multifiliis. Fourteen recombinant clones of 646 bp were sequenced and the level of sequence variation detected among these clones was similar to that reported among closely related species of Tetrahymen...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1006/mpev.1999.0700

    authors: Van Den Bussche RA,Hoofer SR,Drew CP,Ewing MS

    更新日期:2000-03-01 00:00:00

  • Phylogeny of the leafy liverwort Ptilidium: cryptic speciation and shared haplotypes between the Northern and Southern Hemispheres.

    abstract::The small, phylogenetically isolated liverwort genus Ptilidium has been regarded as of cool-Gondwanic origin with the bipolar, terrestrial Ptilidium ciliare giving rise to the Northern Hemisphere epiphytes Ptilidium pulcherrimum and Ptilidium californicum. This hypothesis is examined using a dataset including three ch...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2010.10.002

    authors: Kreier HP,Feldberg K,Mahr F,Bombosch A,Schmidt AR,Zhu RL,von Konrat M,Shaw B,Shaw AJ,Heinrichs J

    更新日期:2010-12-01 00:00:00