Genomic integration of unclonable gene expression cassettes in Saccharomyces cerevisiae using rapid cloning-free workflows.

abstract：:Pseudomonas aeruginosa is a good environmental microorganism capable of degrading decabromodiphenyl ether (BDE-209). This paper studied the effect of Cu2+ and humic acid (HA) extracted from e-waste contaminated soils on biodegradation of BDE-209 by P. aeruginosa. The adsorption isotherms of Cu2+ on HA, the crude enzym...

journal_title：MicrobiologyOpen

authors： Liu Y,Gong A,Qiu L,Li J,Li F

更新日期：2017-06-01 00:00:00

abstract：:Microbial communities in sediments play an important role in alpine lake ecosystems. However, the microbial diversity and community composition of alpine lake sediments from the Hengduan Mountains remain largely unknown. Therefore, based on the Illumina MiSeq platform, high-throughput sequencing analysis of the 16S rR...

journal_title：MicrobiologyOpen

authors： Liao B,Yan X,Zhang J,Chen M,Li Y,Huang J,Lei M,He H,Wang J

更新日期：2019-09-01 00:00:00

abstract：:To investigate the possible effects of sulfamonomethoxine (SMM) on Nile tilapia (Oreochromis niloticus), we quantitatively evaluated the microbial shifts in the intestines of Nile tilapia in response to different doses of SMM (200 and 300 mg/kg) using 16S rRNA gene sequencing. At the phylum level, the control group (0...

journal_title：MicrobiologyOpen

authors： Ming J,Fu Z,Ma Z,Zhou L,Zhang Z,Song C,Yuan X,Wu Q

更新日期：2020-11-01 00:00:00

abstract：:Although microorganisms play crucial roles in ecosystems, metagenomic analyses of soil samples are quite scarce, especially in the Southern Hemisphere. In this work, the microbial diversity of soil samples from an Atlantic Forest and Caatinga was analyzed using a metagenomic approach. Proteobacteria and Actinobacteria...

journal_title：MicrobiologyOpen

authors： Pacchioni RG,Carvalho FM,Thompson CE,Faustino AL,Nicolini F,Pereira TS,Silva RC,Cantão ME,Gerber A,Vasconcelos AT,Agnez-Lima LF

更新日期：2014-06-01 00:00:00

abstract：:The plant growth-promoting rhizobacterium Pseudomonas fluorescens WCS374r produces several iron-regulated metabolites, including the fluorescent siderophore pseudobactin (Psb374), salicylic acid (SA), and pseudomonine (Psm), a siderophore that contains a SA moiety. After purification of Psb374 from culture supernatant...

journal_title：MicrobiologyOpen

authors： Djavaheri M,Mercado-Blanco J,Versluis C,Meyer JM,Loon LC,Bakker PA

更新日期：2012-09-01 00:00:00

abstract：:Avian pathogenic Escherichia coli (APEC) causes airsacculitis, polyserositis, septicemia, and other mainly extraintestinal diseases in chickens, ducks, geese, pigeons, and other avian species, and is responsible for great economic losses in the avian industry. The autoinducer 2 (AI-2) quorum sensing system is widely p...

journal_title：MicrobiologyOpen

authors： Yu L,Li W,Zhang M,Cui Y,Chen X,Ni J,Yu L,Shang F,Xue T

更新日期：2018-08-01 00:00:00

abstract：:Diatoms frequently dominate marine and freshwater biofilms as major primary producers. Nutrient resources in these biofilms are patchily distributed and fluctuate dynamically over time. We recently reported that this spatially and temporally structured environment can be exploited by motile diatoms that use chemoattra...

journal_title：MicrobiologyOpen

authors： V Bondoc KG,Lembke C,Vyverman W,Pohnert G

更新日期：2019-04-01 00:00:00

abstract：AIMS:To assess a cost-effective in-house selective plate formula for actively screening carbapenem-resistant Enterobacteriaceae (CRE). METHODOLOGY AND RESULTS:The in-house formula included CHROMagarTM Orientation, meropenem, and ingredients present in the Mac-Conkey formula, such as bile salts and crystal violet (pH 6...

journal_title：MicrobiologyOpen

authors： Tran TC,Pham BT,Pham VH,Ngo TA,Hanberger H,Larsson M,Olson L

更新日期：2020-12-01 00:00:00

abstract：:Copper resistance system in the cyanobacterium Synechocystis sp. PCC 6803 comprises two operons, copMRS and copBAC, which are expressed in response to copper in the media. copBAC codes for a heavy-metal efflux-resistance nodulation and division (HME-RND) system, while copMRS codes for a protein of unknown function, Co...

journal_title：MicrobiologyOpen

authors： Giner-Lamia J,López-Maury L,Florencio FJ

更新日期：2015-02-01 00:00:00

abstract：:The interactions of pathogens and phagocytes are complex. Our study demonstrated that Aeromonas hydrophila B11 can survive in the macrophagocytes of Tilapia mossambica. To explore the regulatory processes of A. hydrophila survival in the macrophagocytes, we used the mini-Tn10 transposon mutagenesis system to build a m...

journal_title：MicrobiologyOpen

authors： Jiang Q,Chen W,Qin Y,Huang L,Xu X,Zhao L,Yan Q

更新日期：2017-08-01 00:00:00

abstract：:Vibrio coralliilyticus is an important coral pathogen demonstrated to cause disease outbreaks worldwide. This study investigated the feasibility of applying bacteriophage therapy to treat the coral pathogen V. coralliilyticus. A specific bacteriophage for V. coralliilyticus strain P1 (LMG23696), referred to here as ba...

journal_title：MicrobiologyOpen

authors： Cohen Y,Joseph Pollock F,Rosenberg E,Bourne DG

更新日期：2013-02-01 00:00:00

abstract：:This study compared the sensitivity of spores from virulent and attenuated Bacillus anthracis strains in suspension to inactivation by various chemical disinfectants. Spore suspensions from two virulent strains (A0256 and A0372) and two attenuated strains (Sterne and A0141) of B. anthracis were tested against two alde...

journal_title：MicrobiologyOpen

authors： March JK,Cohen MN,Lindsey JM,Millar DA,Lowe CW,Bunnell AJ,O'Neill KL,Schaalje GB,Robison RA

更新日期：2012-12-01 00:00:00

abstract：:In enterohemorrhagic Escherichia coli (EHEC), sigma factor N (σ(N)) regulates glutamate-dependent acid resistance (GDAR) and the locus of enterocyte effacement (LEE); discrete genetic systems that are required for transmission and virulence of this intestinal pathogen. Regulation of these systems requires nitrogen reg...

journal_title：MicrobiologyOpen

authors： Mitra A,Fay PA,Vendura KW,Alla Z,Carroll RK,Shaw LN,Riordan JT

更新日期：2014-08-01 00:00:00

abstract：:[NiFe]-hydrogenases catalyze the reversible conversion of molecular hydrogen into protons end electrons. This reaction takes place at a NiFe(CN)2 (CO) cofactor located in the large subunit of the bipartite hydrogenase module. The corresponding apo-protein carries usually a C-terminal extension that is cleaved off by a...

journal_title：MicrobiologyOpen

authors： Hartmann S,Frielingsdorf S,Caserta G,Lenz O

更新日期：2020-06-01 00:00:00

abstract：:Protein lysine acetylation, a dynamic and reversible posttranslational modification, plays a crucial role in several cellular processes, including cell cycle regulation, metabolism, enzymatic activities, and protein interactions. Brenneria nigrifluens is a pathogen of walnut trees with shallow bark canker and can caus...

journal_title：MicrobiologyOpen

authors： Li Y,Xue H,Bian DR,Xu G,Piao C

更新日期：2020-01-01 00:00:00

abstract：:Sucrose is an important disaccharide used as a substrate in many industrial applications. It is a major component of molasses, a cheap by-product of the sugar industry. Unfortunately, not all industrially relevant organisms, among them Pseudomonas putida, are capable of metabolizing sucrose. We chose a metabolic engin...

journal_title：MicrobiologyOpen

authors： Löwe H,Schmauder L,Hobmeier K,Kremling A,Pflüger-Grau K

更新日期：2017-08-01 00:00:00

abstract：:Resistance to colistin, mediated by chromosomal mutations and more recently, by plasmid-borne mcr genes, is increasingly being reported in bacterial isolates taken from humans, animals, farms, foods, and the environment. To easily identify and contain this quickly spreading menace, efficient diagnostics that are cheap...

journal_title：MicrobiologyOpen

authors： Osei Sekyere J

更新日期：2019-04-01 00:00:00

abstract：:Trying to widen the discussion on the risks associated with dental waste, this study proposed to investigate and genetically compare yeast isolates recovered from dental solid waste and waste workers. Three samples were collected from workers' hands, nasal mucosa, and professional clothing (days 0, 30, and 180), and t...

journal_title：MicrobiologyOpen

authors： Vieira CD,Tagliaferri TL,de Carvalho MAR,de Resende-Stoianoff MA,Holanda RA,de Magalhães TFF,Magalhães PP,Dos Santos SG,de Macêdo Farias L

更新日期：2018-04-01 00:00:00

abstract：:Brazil is the biggest producer of sweet oranges and the main exporter of concentrated orange juice in the world. Among the diseases that affect citriculture, Asiatic citrus canker, caused by the bacterial pathogen Xanthomonas citri, represents one of the most significant threats. The current Brazilian legislation regu...

journal_title：MicrobiologyOpen

authors： Cavalca LB,Zamuner CFC,Saldanha LL,Polaquini CR,Regasini LO,Behlau F,Ferreira H

更新日期：2020-09-01 00:00:00

abstract：BACKGROUND:The microbiome is an integral component of many animal species, potentially affecting behavior, physiology, and other biological properties. Despite this importance, bacterial communities remain vastly understudied in many groups of invertebrates, including mites. Quill mites (Acariformes: Syringophilidae) a...

journal_title：MicrobiologyOpen

authors： Glowska E,Filutowska ZK,Dabert M,Gerth M

更新日期：2020-05-01 00:00:00

abstract：:It is common knowledge that fecal microbiota is a primary source of Escherichia coli causing urinary tract infections (UTIs) via the fecal-perineal-urethral route. But, it is still unknown whether E. coli UTI is mainly caused by dominant fecal E. coli isolates (prevalence hypothesis) or the isolates that possess more ...

journal_title：MicrobiologyOpen

authors： Bahadori M,Motamedifar M,Derakhshandeh A,Firouzi R,Motamedi Boroojeni A,Alinejad M,Naziri Z

更新日期：2019-06-01 00:00:00

abstract：:Urinary tract infections (UTIs) are among the most common bacterial infections in humans. Although a number of bacteria can cause UTIs, most cases are due to infection by uropathogenic Escherichia coli (UPEC). UPEC are a genetically heterogeneous group that exhibit several virulence factors associated with colonizatio...

journal_title：MicrobiologyOpen

authors： Schifano E,Marazzato M,Ammendolia MG,Zanni E,Ricci M,Comanducci A,Goldoni P,Conte MP,Uccelletti D,Longhi C

更新日期：2019-06-01 00:00:00

abstract：:Proteins are the most diverse structures on bacterial surfaces; hence, they are candidates for species- and strain-specific interactions of bacteria with the host, environment, and other microorganisms. Genomics has decoded thousands of bacterial surface and secreted proteins, yet the function of most cannot be predic...

journal_title：MicrobiologyOpen

authors： Gagic D,Wen W,Collett MA,Rakonjac J

更新日期：2013-02-01 00:00:00

abstract：:Eggerthella timonensis strain Marseille-P3135 is a new bacterial species, isolated from the stool sample of a healthy 8-year-old pygmy female. This strain (LT598568) showed a 16S rRNA sequence similarity of 96.95% with its phylogenetically closest species with standing in nomenclature Eggerthella lenta strain DSM 2243...

journal_title：MicrobiologyOpen

authors： Bilen M,Fonkou MDM,Tomei E,Armstrong N,Bittar F,Lagier JC,Daoud Z,Fournier PE,Raoult D,Cadoret F

更新日期：2018-10-01 00:00:00

abstract：:Sourdough fermentation is a traditional process that is used to improve bread quality. A spontaneous sourdough ecosystem consists of a mixture of flour and water that is fermented by endogenous lactic acid bacteria (LAB) and yeasts. The aim of this study was to identify bacterial diversity during backslopping of spont...

journal_title：MicrobiologyOpen

authors： Boreczek J,Litwinek D,Żylińska-Urban J,Izak D,Buksa K,Gawor J,Gromadka R,Bardowski JK,Kowalczyk M

更新日期：2020-04-01 00:00:00

abstract：:Pseudomonas aeruginosa and Staphylococcus aureus mixed-species biofilm infections are more resilient to biocide attacks compared to their single-species counterparts. Therefore, this study used an in vitro model recapitulating bacterial burdens seen in in vivo infections to investigate the interactions of P. aeruginos...

journal_title：MicrobiologyOpen

authors： Miller CL,Van Laar TA,Chen T,Karna SLR,Chen P,You T,Leung KP

更新日期：2017-06-01 00:00:00

abstract：:In cyanobacteria, genes conferring mercury resistance are not organized as mer-operon, unlike in other bacterial phyla. Synechocystis contains only a putative MerR regulator, Slr0701, and a mercury reductase, MerA, located aside from each other in the genome. The slr0701-mutant showed reduction in photosynthetic activ...

journal_title：MicrobiologyOpen

authors： Singh DK,Lingaswamy B,Koduru TN,Nagu PP,Jogadhenu PSS

更新日期：2019-09-01 00:00:00

abstract：:Sustained monoculture often leads to the inhibition of plant growth, the decrease of the soil microbial diversity, and changes in soil microbial community composition, particularly to the accumulation of soil-borne pathogens. In this study, we conducted field experiments to investigate the practical effects of tilling...

journal_title：MicrobiologyOpen

authors： Chen H,Zhao S,Zhao J,Zhang K,Jiang J,Guan Z,Chen S,Chen F,Fang W

更新日期：2020-07-01 00:00:00

abstract：:A robust DNA extraction method is important to identify the majority of microorganisms present in environmental microbial communities and to enable a consistent comparison between different studies. Here, 15 manual and four automated commercial DNA extraction kits were evaluated for their efficiency to extract DNA fro...

journal_title：MicrobiologyOpen

authors： Burbach K,Seifert J,Pieper DH,Camarinha-Silva A

更新日期：2016-02-01 00:00:00

abstract：:Extracts from white birch have been reported to possess antimicrobial properties, but no study has linked the chemical composition of bark extract with antimicrobial activity. This study aimed to identify white birch (Betula papyrifera Marshall) bark extracts with antimicrobial activity and elucidate its composition. ...

journal_title：MicrobiologyOpen

authors： Blondeau D,St-Pierre A,Bourdeau N,Bley J,Lajeunesse A,Desgagné-Penix I

更新日期：2020-01-01 00:00:00