The assembly of the Cape flora is consistent with an edaphic rather than climatic filter.

Abstract:

:The Cape flora is compositionally biased, being dominated by a few fynbos clades (such as Iridaceae, Ericaceae, Proteaceae and Restionaceae) that make up major part of the distinct heathland vegetation in the Cape Floristic Region. Uncertainty exists concerning what excluded the subtropical to tropical palm-dominated woodland/forest vegetation that was the dominant component in the CFR in the Paleocene and allowed the fynbos clades, which are largely derived from outside Africa, to establish and radiate. Two filters have been proposed. The first postulates that the establishment of the Mediterranean climate driven by the late Miocene initiation of the cold-water Benguela Upwelling System (BUS) eliminated the African lineages and allowed the establishment and radiation of sclerophyllous plant clades ("the Mediterranean climate model", MCM). Alternatively, the "oligotrophic soils model" (OSM) postulates that the oligotrophic soils, gradually exhumed by post-Gondwanan Late Cretaceous - early Cenozoic erosion, acted as a filter excluding the African lineages. In this study, we re-calibrate the fynbos clade Phylica (Rhamnaceae), the genus initially used to test the MCM, using new fossil data to test if the crown age precedes the Late Miocene. Our results indicate that we cannot significantly reject a crown age of Phylica consistent with the MCM. We compare the MCM and OSM model for the Cape fynbos flora by compiling the crown ages of 22 fynbos clades. We show that crown ages are not clustered in time around the initiation of the BUS but, are dispersed throughout the Cenozoic. This suggests that oligotrophic soils, rather than summer drought, acted as a filter. Consequently, we argue that the fynbos clades radiated separately in expanding edaphically controlled heathland patches in the Cape mountains as sandstone exhumation after the Gondwanan break-up progressed.

journal_name

Mol Phylogenet Evol

authors

van Santen M,Linder HP

doi

10.1016/j.ympev.2019.106645

subject

Has Abstract

pub_date

2020-01-01 00:00:00

pages

106645

eissn

1055-7903

issn

1095-9513

pii

S1055-7903(19)30452-X

journal_volume

142

pub_type

杂志文章
  • A recent evolutionary origin of a bacterial small RNA that controls multicellular fruiting body development.

    abstract::In animals and plants, non-coding small RNAs regulate the expression of many genes at the post-transcriptional level. Recently, many non-coding small RNAs (sRNAs) have also been found to regulate a variety of important biological processes in bacteria, including social traits, but little is known about the phylogeneti...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2014.01.001

    authors: Chen IC,Griesenauer B,Yu YT,Velicer GJ

    更新日期:2014-04-01 00:00:00

  • Phylogeny and age of diversification of the planitibia species group of the Hawaiian Drosophila.

    abstract::The Hawaiian Drosophila offer a unique opportunity to examine evolutionary questions because of the known ages of the Hawaiian Islands and the large number of species endemic to this archipelago. One of the more well studied groups of Hawaiian Drosophila is the planitibia species group, a long-standing population gene...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2005.03.008

    authors: Bonacum J,O'Grady PM,Kambysellis M,Desalle R

    更新日期:2005-10-01 00:00:00

  • Each flying fox on its own branch: a phylogenetic tree for Pteropus and related genera (Chiroptera: Pteropodidae).

    abstract::Pteropodidae is a diverse Old World family of non-echolocating, frugivorous and nectarivorous bats that includes the flying foxes (genus Pteropus) and allied genera. The subfamily Pteropodinae includes the largest living bats and is distributed across an immense geographic range from islands in East Africa to the Cook...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2014.03.009

    authors: Almeida FC,Giannini NP,Simmons NB,Helgen KM

    更新日期:2014-08-01 00:00:00

  • Phylogenetic relationships of the enigmatic angiosperm family Podostemaceae inferred from 18S rDNA and rbcL sequence data.

    abstract::The phylogenetic relationships of some angiosperm families have remained enigmatic despite broad phylogenetic analyses of rbcL sequences. One example is the aquatic family Podostemaceae, the relationships of which have long been controversial because of major morphological modifications associated with their aquatic h...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1006/mpev.1998.0577

    authors: Soltis DE,Mort ME,Soltis PS,Hibsch-Jetter C,Zimmer EA,Morgan D

    更新日期:1999-03-01 00:00:00

  • A novel BLAST-Based Relative Distance (BBRD) method can effectively group members of protein arginine methyltransferases and suggest their evolutionary relationship.

    abstract::We developed a novel BLAST-Based Relative Distance (BBRD) method by Pearson's correlation coefficient to avoid the problems of tedious multiple sequence alignment and complicated outgroup selection. We showed its application on reconstructing reliable phylogeny for nucleotide and protein sequences as exemplified by th...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2014.12.002

    authors: Wang YC,Wang JD,Chen CH,Chen YW,Li C

    更新日期:2015-03-01 00:00:00

  • Shark tales: a molecular species-level phylogeny of sharks (Selachimorpha, Chondrichthyes).

    abstract::Sharks are a diverse and ecologically important group, including some of the ocean's largest predatory animals. Sharks are also commercially important, with many species suffering overexploitation and facing extinction. However, despite a long evolutionary history, commercial, and conservation importance, phylogenetic...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2010.11.018

    authors: Vélez-Zuazo X,Agnarsson I

    更新日期:2011-02-01 00:00:00

  • Biogeography and diversification dynamics of the African woodpeckers.

    abstract::The dynamics of species accumulation of African terrestrial vertebrates over time remains underexplored in comparison with those in the New World, despite Africa hosting about 25% of the world's avian diversity. This lack of knowledge hampers our understanding of the fundamental processes that drive biodiversity and t...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2017.01.007

    authors: Fuchs J,Pons JM,Bowie RC

    更新日期:2017-03-01 00:00:00

  • Compositional heterogeneity and outgroup choice influence the internal phylogeny of the ants.

    abstract::Knowledge of the internal phylogeny and evolutionary history of ants (Formicidae), the world's most species-rich clade of eusocial organisms, has dramatically improved since the advent of molecular phylogenetics. A number of relationships at the subfamily level, however, remain uncertain. Key unresolved issues include...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2019.01.024

    authors: Borowiec ML,Rabeling C,Brady SG,Fisher BL,Schultz TR,Ward PS

    更新日期:2019-05-01 00:00:00

  • Molecular phylogenetics and evolution of host plant use in the Neotropical rolled leaf 'hispine' beetle genus Cephaloleia (Chevrolat) (Chrysomelidae: Cassidinae).

    abstract::Here, we report the results of a species level phylogenetic study of Cephaloleia beetles designed to clarify relationships and patterns of host plant taxon and tissue use among species. Our study is based on up to 2088bp of mtDNA sequence data. Maximum parsimony, maximum likelihood, and Bayesian methods of phylogeneti...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2005.06.011

    authors: McKenna DD,Farrell BD

    更新日期:2005-10-01 00:00:00

  • Phylotranscriptomics resolves interspecific relationships and indicates multiple historical out-of-North America dispersals through the Bering Land Bridge for the genus Picea (Pinaceae).

    abstract::A robust phylogeny is prerequisite to understand the evolution and biogeography of organisms. However, ancient and recent evolutionary radiations occurred in many plant lineages, which pose great challenges for phylogenetic analysis, especially for conifers characterized by large effective population sizes and long ge...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2019.106610

    authors: Shao CC,Shen TT,Jin WT,Mao HJ,Ran JH,Wang XQ

    更新日期:2019-12-01 00:00:00

  • Swimming through the sands of the Sahara and Arabian deserts: Phylogeny of sandfish skinks (Scincidae, Scincus) reveals a recent and rapid diversification.

    abstract::Large parts of the Sahara Desert and Arabia are covered by sand seas and sand dunes, which are inhabited by specialized animal communities. For example, many lizards have developed adaptations to life in loose sand, including sand-swimming behavior. The best-known sand swimmers of the Saharo-Arabia are the sandfish sk...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2020.107012

    authors: Šmíd J,Uvizl M,Shobrak M,Salim AFA,AlGethami RHM,Algethami AR,Alanazi ASK,Alsubaie SD,Busais S,Carranza S

    更新日期:2021-02-01 00:00:00

  • Phylogeny and diversification of mountain vipers (Montivipera, Nilson et al., 2001) triggered by multiple Plio-Pleistocene refugia and high-mountain topography in the Near and Middle East.

    abstract::The Near and Middle East is a hotspot of biodiversity, but the region remains underexplored at the level of genetic biodiversity. Here, we present an extensive molecular phylogeny of the viperid snake genus Montivipera, including all known taxa. Based on nuclear and mitochondrial data, we present novel insights into t...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2016.04.025

    authors: Stümpel N,Rajabizadeh M,Avcı A,Wüster W,Joger U

    更新日期:2016-08-01 00:00:00

  • Contrasting patterns of genetic structure in two species of the coral trout Plectropomus (Serranidae) from east and west Australia: introgressive hybridisation or ancestral polymorphisms.

    abstract::Inter-specific genetic relationships among regional populations of two species of grouper (Plectropomus maculatus and Plectropomus leopardus) were examined using mitochondrial and nuclear markers. mtDNA revealed contrasting regional inter-specific patterns whilst nuclear markers revealed contrasting patterns among mar...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2006.04.024

    authors: van Herwerden L,Choat JH,Dudgeon CL,Carlos G,Newman SJ,Frisch A,van Oppen M

    更新日期:2006-11-01 00:00:00

  • Amphibian phylogeography in the Antipodes: Refugia and postglacial colonization explain mitochondrial haplotype distribution in the Patagonian frog Eupsophus calcaratus (Cycloramphidae).

    abstract::Climatic oscillations, heterogeneity in elevation, topographical position, and isolation time in southwestern Patagonia have been important in promoting diversification of the biota. Geological studies have shown that this region had wide ice-free areas during periods of the last glacial maximum and provided forested ...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2010.11.026

    authors: Nuñez JJ,Wood NK,Rabanal FE,Fontanella FM,Sites JW Jr

    更新日期:2011-02-01 00:00:00

  • Phylogeny of xantusiid lizards: concern for data and analysis.

    abstract::Phylogenetic analyses of new DNA sequence data from the mitochondrial 16S rRNA gene in xantusiid lizards support the intergeneric relationships obtained previously (S.B. Hedges, R.L. Bezy, and L.B. Maxson, 1991, Mol. Biol. Evol. 8:767-780) with data from the 12S rRNA and cytochrome b (cyt b) genes. The total data set ...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1006/mpev.1993.1008

    authors: Hedges SB,Bezy RL

    更新日期:1993-03-01 00:00:00

  • Phylogeny of Drosophilinae (Diptera: Drosophilidae), with comments on combined analysis and character support.

    abstract::Drosophilidae (Diptera) is a diverse, cosmopolitan family of flies. Here, we present a combined analysis phylogeny of Drosophilinae, one of the two subfamilies of Drosophilidae, based on data from six different data partitions, including both molecular and morphological characters. Although our data show support for t...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/s1055-7903(02)00226-9

    authors: Remsen J,O'Grady P

    更新日期:2002-08-01 00:00:00

  • Starting to unravel the toxoglossan knot: molecular phylogeny of the "turrids" (Neogastropoda: Conoidea).

    abstract::The superfamily Conoidea is one of the most speciose groups of marine mollusks, with estimates of about 340 recent valid genera and subgenera, and 4000 named living species. Previous classifications were based on shell and anatomical characters, and clades and phylogenetic relationships are far from well assessed. Bas...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2007.11.007

    authors: Puillandre N,Samadi S,Boisselier MC,Sysoev AV,Kantor YI,Cruaud C,Couloux A,Bouchet P

    更新日期:2008-06-01 00:00:00

  • A cladistic analysis of mitochondrial ribosomal DNA from the Bovidae.

    abstract::There is a huge data base of genetic information for the domestic artiodactyl species Bos taurus (cow), Ovis aries (sheep), and Capra hircus (goat). However, the phylogenetic relationships of these economically critical taxa and their close relatives, family Bovidae, remain for the most part unresolved. In this report...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1006/mpev.1997.0402

    authors: Gatesy J,Amato G,Vrba E,Schaller G,DeSalle R

    更新日期:1997-06-01 00:00:00

  • Evolution of South American spiny rats (Rodentia, Echimyidae): the star-phylogeny hypothesis revisited.

    abstract::We analyzed the phylogenetic relationships of echimyid genera based on sequences of the cytochrome b, 12S, and 16S mitochondrial genes. Our results corroborate the monophyly of Octodontoidea and the rapid diversification of echimyid rodents as previously proposed. The analyses indicate that the family Echimyidae, incl...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/s1055-7903(02)00279-8

    authors: Leite YL,Patton JL

    更新日期:2002-12-01 00:00:00

  • Nucleotide substitution analyses of the glaucophyte Cyanophora suggest an ancestrally lower mutation rate in plastid vs mitochondrial DNA for the Archaeplastida.

    abstract::A lot is known about the evolution and architecture of plastid, mitochondrial, and nuclear genomes, but surprisingly little is known about their relative rates of mutation. Most available relative-rate data come from seed plants, which, with few exceptions, have a mitochondrial mutation rate that is lower than those o...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2014.07.001

    authors: Smith DR,Jackson CJ,Reyes-Prieto A

    更新日期:2014-10-01 00:00:00

  • Molecular phylogeny of truffles (Pezizales: Terfeziaceae, Tuberaceae) derived from nuclear rDNA sequence analysis.

    abstract::Extensive morphological convergence or divergence, a common occurrence in fungi, tends to obscure recognition of phylogenetic relationships among Pezizales, widespread filamentous Ascomycetes with either enclosed underground (hypogeous) or exposed (epigeous) fruit bodies, that often establish mutualistic interactions ...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1006/mpev.1999.0638

    authors: Percudani R,Trevisi A,Zambonelli A,Ottonello S

    更新日期:1999-10-01 00:00:00

  • Phylogeographic and diversification patterns of the white-nosed coati (Nasua narica): Evidence for south-to-north colonization of North America.

    abstract::White-nosed coatis (Nasua narica) are widely distributed throughout North, Central, and South America, but the patterns of temporal and spatial diversification that have contributed to this distribution are unknown. In addition, the biogeographic history of procyonid species in the Americas remains contentious. Using ...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2018.11.011

    authors: Nigenda-Morales SF,Gompper ME,Valenzuela-Galván D,Lay AR,Kapheim KM,Hass C,Booth-Binczik SD,Binczik GA,Hirsch BT,McColgin M,Koprowski JL,McFadden K,Wayne RK,Koepfli KP

    更新日期:2019-02-01 00:00:00

  • Phylogeography of a morphologically diverse Neotropical montane species, the Common Bush-Tanager (Chlorospingus ophthalmicus).

    abstract::The Common Bush-Tanager (Chlorospingus ophthalmicus) is distributed in Neotropical cloud-forests from Mexico to Argentina and contains 25 subspecies divided into eight subspecies groups based on biogeography, eye coloration, presence of a postocular spot and chest band. All of Central America is occupied by a single s...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2008.02.004

    authors: Weir JT,Bermingham E,Miller MJ,Klicka J,González MA

    更新日期:2008-05-01 00:00:00

  • Fruiting and non-fruiting myxobacteria: a phylogenetic perspective of cultured and uncultured members of this group.

    abstract::The diversity of myxobacteria present in campus garden soil was surveyed by both cultivation-based and cultivation-independent methods. Detailed phylogenetic analysis of cultured and uncultured myxobacteria 16S rRNA gene sequences revealed that many undescribed relatives of the myxobacteria exist in nature. Molecular ...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2007.04.004

    authors: Jiang DM,Wu ZH,Zhao JY,Li YZ

    更新日期:2007-08-01 00:00:00

  • A very short, functionally constrained sequence diagnoses cone snails in several Conasprella clades.

    abstract::The traditional taxonomy of ca. 700 cone snails assigns all species to a single genus, Conus Linnaeus 1758. However, an increasing body of evidence suggests that some belong to a phylogenetically distinct clade that is sometimes referred to as Conasprella. Previous work (Kraus et al., 2011) showed that a short (259 bp...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2012.06.014

    authors: Kraus NJ,Watkins M,Bandyopadhyay PK,Seger J,Olivera BM,Corneli PS

    更新日期:2012-10-01 00:00:00

  • Historical biogeography and speciation in the reef fish genus Haemulon (Teleostei: Haemulidae).

    abstract::The high biodiversity of tropical marine hotspots has long intrigued evolutionary biologists and biogeographers. The genus Haemulon (grunts) is one of the most important (numerically, ecologically, and economically) reef fish groups in the New World and an excellent candidate to test hypotheses of speciation and diver...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2008.05.024

    authors: Rocha LA,Lindeman KC,Rocha CR,Lessios HA

    更新日期:2008-09-01 00:00:00

  • BaCoCa--a heuristic software tool for the parallel assessment of sequence biases in hundreds of gene and taxon partitions.

    abstract::BaCoCa (BAse COmposition CAlculator) is a user-friendly software that combines multiple statistical approaches (like RCFV and C value calculations) to identify biases in aligned sequence data which potentially mislead phylogenetic reconstructions. As a result of its speed and flexibility, the program provides the poss...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2013.09.011

    authors: Kück P,Struck TH

    更新日期:2014-01-01 00:00:00

  • Epigenetic phenomena and the evolution of plant allopolyploids.

    abstract::Allopolyploid speciation is widespread in plants, yet the molecular requirements for successful orchestration of coordinated gene expression for two divergent and reunited genomes are poorly understood. Recent studies in several plant systems have revealed that allopolyploid genesis under both synthetic and natural co...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章,评审

    doi:10.1016/s1055-7903(03)00213-6

    authors: Liu B,Wendel JF

    更新日期:2003-12-01 00:00:00

  • Exploring the radiation of a diverse reef fish family: phylogenetics of the damselfishes (Pomacentridae), with new classifications based on molecular analyses of all genera.

    abstract::The damselfishes (Perciformes, Pomacentridae) are an important family of marine reef fishes that occupy a range of ecological positions in the world's oceans. In order to determine the evolutionary pattern of their radiation, we used multiple methods to examine molecular data from 104 species representing all extant g...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/j.ympev.2008.12.010

    authors: James Cooper W,Smith LL,Westneat MW

    更新日期:2009-07-01 00:00:00

  • Amino acid vs. nucleotide characters: challenging preconceived notions.

    abstract::The 567-terminal analysis of atpB, rbcL, and 18S rDNA was used as an empirical example to test the use of amino acid vs. nucleotide characters for protein-coding genes at deeper taxonomic levels. Nucleotides for atpB and rbcL had 6.5 times the amount of possible synapomorphy as amino acids. Based on parsimony analyses...

    journal_title:Molecular phylogenetics and evolution

    pub_type: 杂志文章

    doi:10.1016/s1055-7903(02)00202-6

    authors: Simmons MP,Ochoterena H,Freudenstein JV

    更新日期:2002-07-01 00:00:00