A rapid culture system uninfluenced by an inoculum effect increases reliability and convenience for drug susceptibility testing of Mycobacterium tuberculosis.

Abstract:

:The Disc Agarose Channel (DAC) system utilizes microfluidics and imaging technologies and is fully automated and capable of tracking single cell growth to produce Mycobacterium tuberculosis (MTB) drug susceptibility testing (DST) results within 3~7 days. In particular, this system can be easily used to perform DSTs without the fastidious preparation of the inoculum of MTB cells. Inoculum effect is one of the major problems that causes DST errors. The DAC system was not influenced by the inoculum effect and produced reliable DST results. In this system, the minimum inhibitory concentration (MIC) values of the first-line drugs were consistent regardless of inoculum sizes ranging from ~103 to ~108 CFU/mL. The consistent MIC results enabled us to determine the critical concentrations for 12 anti-tuberculosis drugs. Based on the determined critical concentrations, further DSTs were performed with 254 MTB clinical isolates without measuring an inoculum size. There were high agreement rates (96.3%) between the DAC system and the absolute concentration method using Löwenstein-Jensen medium. According to these results, the DAC system is the first DST system that is not affected by the inoculum effect. It can thus increase reliability and convenience for DST of MTB. We expect that this system will be a potential substitute for conventional DST systems.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Jung YG,Kim H,Lee S,Kim S,Jo E,Kim EG,Choi J,Kim HJ,Yoo J,Lee HJ,Kim H,Jung H,Ryoo S,Kwon S

doi

10.1038/s41598-018-26419-z

subject

Has Abstract

pub_date

2018-06-05 00:00:00

pages

8651

issue

1

issn

2045-2322

pii

10.1038/s41598-018-26419-z

journal_volume

8

pub_type

杂志文章
  • Acquisition of the capsule locus by horizontal gene transfer in Neisseria meningitidis is often accompanied by the loss of UDP-GalNAc synthesis.

    abstract::Pathogenic meningococci have acquired a 24 kb capsule synthesis island (cps) by horizontal gene transfer which consists of a synthetic locus and associated capsule transport genes flanked by repetitive Regions D and D'. Regions D and D' contain an intact gene encoding a UDP-galactose epimerase (galE1) and a truncated ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep44442

    authors: Bartley SN,Mowlaboccus S,Mullally CA,Stubbs KA,Vrielink A,Maiden MC,Harrison OB,Perkins TT,Kahler CM

    更新日期:2017-03-14 00:00:00

  • Digit ratio (2D:4D) and transgender identity: new original data and a meta-analysis.

    abstract::Previously reported associations between second-to-fourth digit length ratio (2D:4D), a proxy for prenatal androgen load, and transgender identity have been inconsistent. The objectives of the present study were to provide additional original data and an updated meta-analysis concerning this association. In a study of...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-72486-6

    authors: Siegmann EM,Müller T,Dziadeck I,Mühle C,Lenz B,Kornhuber J

    更新日期:2020-11-09 00:00:00

  • How DNA barcoding can be more effective in microalgae identification: a case of cryptic diversity revelation in Scenedesmus (Chlorophyceae).

    abstract::Microalgae identification is extremely difficult. The efficiency of DNA barcoding in microalgae identification involves ideal gene markers and approaches employed, which however, is still under the way. Although Scenedesmus has obtained much research in producing lipids its identification is difficult. Here we present...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep36822

    authors: Zou S,Fei C,Wang C,Gao Z,Bao Y,He M,Wang C

    更新日期:2016-11-09 00:00:00

  • Development of a lateral flow test for bed bug detection.

    abstract::Lateral flow strip tests are a cost-effective method for detecting specific proteins in biological samples, which can be performed in the field without specialized expertise. While most recognizable in the pregnancy tests, there are many other applications for lateral flow strip technology. The pest control industry h...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-70200-0

    authors: Ko A,Choe DH

    更新日期:2020-08-07 00:00:00

  • Normally lethal amino acid substitutions suppress an ultramutator DNA Polymerase δ variant.

    abstract::In yeast, the pol3-01,L612M double mutant allele, which causes defects in DNA polymerase delta (Pol δ) proofreading (pol3-01) and nucleotide selectivity (pol3-L612M), confers an "ultramutator" phenotype that rapidly drives extinction of haploid and diploid MMR-proficient cells. Here, we investigate antimutator mutatio...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep46535

    authors: Dennis DG,McKay-Fleisch J,Eitzen K,Dowsett I,Kennedy SR,Herr AJ

    更新日期:2017-04-18 00:00:00

  • Molecular evidence of RNA polymerase II gene reveals the origin of worldwide cultivated barley.

    abstract::The origin and domestication of cultivated barley have long been under debate. A population-based resequencing and phylogenetic analysis of the single copy of RPB2 gene was used to address barley domestication, to explore genetic differentiation of barley populations on the worldwide scale, and to understand gene-pool...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep36122

    authors: Wang Y,Ren X,Sun D,Sun G

    更新日期:2016-10-27 00:00:00

  • Scanning tunneling microscopy on cleaved Mn3Sn(0001) surface.

    abstract::We have studied in-situ cleaved (0001) surfaces of the magnetic Weyl semimetal Mn3Sn by low-temperature scanning tunneling microscopy and spectroscopy (STM/S). It was found that freshly cleaved Mn3Sn surfaces are covered with unknown clusters, and the application of voltage pulses in the tunneling condition was needed...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-45958-7

    authors: Yang HH,Lee CC,Yoshida Y,Ikhlas M,Tomita T,Nugroho A,Ozaki T,Nakatsuji S,Hasegawa Y

    更新日期:2019-07-04 00:00:00

  • The theoretical molecular weight of NaYF 4 :RE upconversion nanoparticles.

    abstract::Upconversion nanoparticles (UCNPs) are utilized extensively for biomedical imaging, sensing, and therapeutic applications, yet the molecular weight of UCNPs has not previously been reported. Herein, we present a theory based upon the crystal structure of UCNPs to estimate the molecular weight of UCNPs: enabling insigh...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-19415-w

    authors: Mackenzie LE,Goode JA,Vakurov A,Nampi PP,Saha S,Jose G,Millner PA

    更新日期:2018-01-18 00:00:00

  • Schisandrin A inhibits dengue viral replication via upregulating antiviral interferon responses through STAT signaling pathway.

    abstract::Dengue virus (DENV) infects 400 million people worldwide annually. Infection of more than one serotype of DENV highly corresponds to dengue hemorrhagic fever and dengue shock syndrome, which are the leading causes of high mortality. Due to lack of effective vaccines and unavailable therapies against DENV, discovery of...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep45171

    authors: Yu JS,Wu YH,Tseng CK,Lin CK,Hsu YC,Chen YH,Lee JC

    更新日期:2017-03-24 00:00:00

  • Men increase contributions to a public good when under sexual competition.

    abstract::Why humans cooperate in large groups and with non-kin remains a puzzle for researchers across the natural and social sciences. Investigating whether cooperation is sexually selected could contribute to an understanding of the evolution of human cooperation. Competition for access to mates could indeed select for coope...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep29819

    authors: Tognetti A,Dubois D,Faurie C,Willinger M

    更新日期:2016-07-14 00:00:00

  • Synergy of AERONET and MODIS AOD products in the estimation of PM2.5 concentrations in Beijing.

    abstract::Satellite aerosol optical depth (AOD) is widely used to estimate particulate matter with aerodynamic diameter ≤2.5 µm (PM2.5) mass concentrations. Polar orbiting satellite retrieval 1-2 times each day is frequently affected by cloud, snow cover or misclassification of heavy pollution. Novel methods are therefore requi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-28535-2

    authors: Fu D,Xia X,Wang J,Zhang X,Li X,Liu J

    更新日期:2018-07-05 00:00:00

  • RAGE inhibition reduces acute lung injury in mice.

    abstract::The receptor for advanced glycation end-products (RAGE) is involved in inflammatory response during acute respiratory distress syndrome (ARDS). Growing body of evidence support strategies of RAGE inhibition in experimental lung injury, but its modalities and effects remain underinvestigated. Anesthetised C57BL/6JRj mi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-07638-2

    authors: Blondonnet R,Audard J,Belville C,Clairefond G,Lutz J,Bouvier D,Roszyk L,Gross C,Lavergne M,Fournet M,Blanchon L,Vachias C,Damon-Soubeyrand C,Sapin V,Constantin JM,Jabaudon M

    更新日期:2017-08-03 00:00:00

  • Functional conservation of EXA1 among diverse plant species for the infection by a family of plant viruses.

    abstract::Since the propagation of plant viruses depends on various host susceptibility factors, deficiency in them can prevent viral infection in cultivated and model plants. Recently, we identified the susceptibility factor Essential for poteXvirus Accumulation 1 (EXA1) in Arabidopsis thaliana, and revealed that EXA1-mediated...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-42400-w

    authors: Yusa A,Neriya Y,Hashimoto M,Yoshida T,Fujimoto Y,Hosoe N,Keima T,Tokumaru K,Maejima K,Netsu O,Yamaji Y,Namba S

    更新日期:2019-04-11 00:00:00

  • Autapse-induced multiple coherence resonance in single neurons and neuronal networks.

    abstract::We study the effects of electrical and chemical autapse on the temporal coherence or firing regularity of single stochastic Hodgkin-Huxley neurons and scale-free neuronal networks. Also, we study the effects of chemical autapse on the occurrence of spatial synchronization in scale-free neuronal networks. Irrespective ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep30914

    authors: Yilmaz E,Ozer M,Baysal V,Perc M

    更新日期:2016-08-02 00:00:00

  • Systematic comparison between methods for the detection of influential spreaders in complex networks.

    abstract::Influence maximization is the problem of finding the set of nodes of a network that maximizes the size of the outbreak of a spreading process occurring on the network. Solutions to this problem are important for strategic decisions in marketing and political campaigns. The typical setting consists in the identificatio...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-51209-6

    authors: Erkol Ş,Castellano C,Radicchi F

    更新日期:2019-10-22 00:00:00

  • Global identification and analysis of isozyme-specific possible substrates crosslinked by transglutaminases using substrate peptides in mouse liver fibrosis.

    abstract::The transglutaminase (TG) family comprises eight isozymes that form the isopeptide bonds between glutamine and lysine residues and contribute to the fibrotic diseases via crosslinking-mediated stabilization of ECM and the activation of TGF-β in several tissues. However, despite a growing body of evidence implicating T...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep45049

    authors: Tatsukawa H,Tani Y,Otsu R,Nakagawa H,Hitomi K

    更新日期:2017-03-22 00:00:00

  • 50 Years of Cetacean Strandings Reveal a Concerning Rise in Chilean Patagonia.

    abstract::Cetacean strandings (CS) have been reported in increasing numbers in coastal areas worldwide. Although the causes of these strandings are unknown, a number of anthropogenic and environmental factors have been suggested. This paper aims to characterize CS patterns and describe their fine-scale spatiotemporal dynamics. ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-66484-x

    authors: Alvarado-Rybak M,Toro F,Escobar-Dodero J,Kinsley AC,Sepúlveda MA,Capella J,Azat C,Cortés-Hinojosa G,Zimin-Veselkoff N,Mardones FO

    更新日期:2020-06-11 00:00:00

  • N-hypermannose glycosylation disruption enhances recombinant protein production by regulating secretory pathway and cell wall integrity in Saccharomyces cerevisiae.

    abstract::Saccharomyces cerevisiae is a robust host for heterologous protein expression. The efficient expression of cellulases in S. cerevisiae is important for the consolidated bioprocess that directly converts lignocellulose into valuable products. However, heterologous proteins are often N-hyperglycosylated in S. cerevisiae...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep25654

    authors: Tang H,Wang S,Wang J,Song M,Xu M,Zhang M,Shen Y,Hou J,Bao X

    更新日期:2016-05-09 00:00:00

  • Active site competition is the mechanism for the inhibition of lipoprotein-associated phospholipase A2 by detergent micelles or lipoproteins and for the efficacy reduction of darapladib.

    abstract::Lipoprotein associated phospholipase A2 (Lp-PLA2) has been characterized for its interfacial activation as well as inhibition by detergent micelles and lipoprotein particles. The enzyme has been shown to bind on the surfaces of hydrophobic aggregates, such as detergent micelles, lipoprotein particles and even polystyr...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-74236-0

    authors: Zhuo S,Yuan C

    更新日期:2020-10-14 00:00:00

  • Cholecystectomy is associated with higher risk of early recurrence and poorer survival after curative resection for early stage hepatocellular carcinoma.

    abstract::Although cholecystectomy has been reported to be associated with increased risk of developing hepatocellular carcinoma (HCC), the association between cholecystectomy and prognosis of HCC patients underwent curative resection has never been examined. Through retrospective analysis of the data of 3933 patients underwent...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep28229

    authors: Li T,Wang SK,Zhi XT,Zhou J,Dong ZR,Zhang ZL,Sun HC,Ye QH,Fan J

    更新日期:2016-06-20 00:00:00

  • Predicting 3D moisture sorption behavior of materials from 1D investigations.

    abstract::Moisture in materials can be a source of future outgassing and exacerbate unwanted changes in physical and chemical properties. Here, we investigate the effect of sample size and shape on the moisture transport phenomena through a combined experimental and modeling approach. Several different materials varying in size...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-74898-w

    authors: Sharma HN,Sun Y,Glascoe EA

    更新日期:2020-10-20 00:00:00

  • Self in vivo production of a synthetic biological drug CTLA4Ig using a minicircle vector.

    abstract::Cytotoxic T lymphocyte-associated antigen 4 immunoglobulin fusion protein (CTLA4Ig, abatacept) is a B7/CD28 costimulation inhibitor that can ward off the immune response by preventing the activation of naïve T cells. This therapeutic agent is administered to patients with autoimmune diseases such as rheumatoid arthrit...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep06935

    authors: Rim YA,Yi H,Kim Y,Park N,Jung H,Kim J,Jung SM,Park SH,Ju JH

    更新日期:2014-11-06 00:00:00

  • Application of a Limit-Cycle Oscillator Model for Prediction of Circadian Phase in Rotating Night Shift Workers.

    abstract::Practical alternatives to gold-standard measures of circadian timing in shift workers are needed. We assessed the feasibility of applying a limit-cycle oscillator model of the human circadian pacemaker to estimate circadian phase in 25 nursing and medical staff in a field setting during a transition from day/evening s...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-47290-6

    authors: Stone JE,Aubert XL,Maass H,Phillips AJK,Magee M,Howard ME,Lockley SW,Rajaratnam SMW,Sletten TL

    更新日期:2019-07-30 00:00:00

  • Isolation, identification, structural elucidation and bioactivity of Heneicos-1-ene from Coriandrum sativum L. foliage.

    abstract::Coriander foliage is a distinctive spice employed on a daily basis in curry and other Indian traditional food preparations mainly for the unique flavour attributes and health benefits. Radical scavenging activity has been demonstrated previously for coriander foliage. However, specific molecules responsible were not i...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-35836-z

    authors: Priyadarshi S,Harohally NV,Roopavathi C,Naidu MM

    更新日期:2018-11-27 00:00:00

  • Development of the muographic tephra deposit monitoring system.

    abstract::Measurements of volcanic tephra fallout deposits provide useful information about the magnitude and intensity of explosive volcanic eruptions and potential for remobilization of deposits as dangerous volcanic flows. However, gathering information in the vicinity of erupting craters is extremely dangerous, and moreover...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-71902-1

    authors: Tanaka HKM

    更新日期:2020-09-09 00:00:00

  • Photonic jet lens.

    abstract::Microsphere-assisted microscopy currently benefits from a considerable interest in the microscope-research community. Indeed, this new imaging technique enables the lateral resolution of optical microscopes to reach around λ/5 through a full-field and a far-field acquisition while being label-free. Despite the photoni...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-41193-2

    authors: Lecler S,Perrin S,Leong-Hoi A,Montgomery P

    更新日期:2019-03-18 00:00:00

  • NMR studies on the interactions between yeast Vta1 and Did2 during the multivesicular bodies sorting pathway.

    abstract::As an AAA-ATPase, Vps4 is important for function of multivesicular bodies (MVB) sorting pathway, which involves in cellular phenomena ranging from receptor down-regulation to viral budding to cytokinesis. The activity of Vps4 is stimulated by the interactions between Vta1 N-terminus (named as Vta1NTD) and Did2 fragmen...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep38710

    authors: Shen J,Yang Z,Wang J,Zhao B,Lan W,Wang C,Zhang X,Wild CJ,Liu M,Xu Z,Cao C

    更新日期:2016-12-07 00:00:00

  • Chimeric yellow fever 17D-Zika virus (ChimeriVax-Zika) as a live-attenuated Zika virus vaccine.

    abstract::Zika virus (ZIKV) is an emerging mosquito-borne pathogen representing a global health concern. It has been linked to fetal microcephaly and other birth defects and neurological disorders in adults. Sanofi Pasteur has engaged in the development of an inactivated ZIKV vaccine, as well as a live chimeric vaccine candidat...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-31375-9

    authors: Giel-Moloney M,Goncalvez AP,Catalan J,Lecouturier V,Girerd-Chambaz Y,Diaz F,Maldonado-Arocho F,Gomila RC,Bernard MC,Oomen R,Delagrave S,Burdin N,Kleanthous H,Jackson N,Heinrichs J,Pugachev KV

    更新日期:2018-09-04 00:00:00

  • Experimental and thermodynamic modeling decitabine anti cancer drug solubility in supercritical carbon dioxide.

    abstract::Design and development of efficient processes for continuous manufacturing of solid dosage oral formulations is of crucial importance for pharmaceutical industry in order to implement the Quality-by-Design paradigm. Supercritical solvent-based manufacturing can be utilized in pharmaceutical processing owing to its inh...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-80399-7

    authors: Pishnamazi M,Zabihi S,Jamshidian S,Borousan F,Hezave AZ,Marjani A,Shirazian S

    更新日期:2021-01-13 00:00:00

  • Differences in the diagnosis and management of pyriform sinus fistula between newborns and children.

    abstract::Pyriform sinus fistula (PSF) is a rare congenital entity. We hypothesized that clinical features, diagnosis and treatment may differ between newborns and children. 190 patients diagnosed with PSF were divided into two groups: neonatal (n = 15) and childhood (n = 175). The medical records including demographic and clin...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-55050-9

    authors: Sheng Q,Lv Z,Xu W,Liu J

    更新日期:2019-12-06 00:00:00