Abstract:
Background and Aims:Root architecture development determines the sites in soil where roots provide input of carbon and take up water and solutes. However, root architecture is difficult to determine experimentally when grown in opaque soil. Thus, root architecture models have been widely used and been further developed into functional-structural models that simulate the fate of water and solutes in the soil-root system. The root architecture model CRootBox presented here is a flexible framework to model root architecture and its interactions with static and dynamic soil environments. Methods:CRootBox is a C++-based root architecture model with Python binding, so that CRootBox can be included via a shared library into any Python code. Output formats include VTP, DGF, RSML and a plain text file containing coordinates of root nodes. Furthermore, a database of published root architecture parameters was created. The capabilities of CRootBox for the unconfined growth of single root systems, as well as the different parameter sets, are highlighted in a freely available web application. Key results:The capabilities of CRootBox are demonstrated through five different cases: (1) free growth of individual root systems; (2) growth of root systems in containers as a way to mimic experimental setups; (3) field-scale simulation; (4) root growth as affected by heterogeneous, static soil conditions; and (5) coupling CRootBox with code from the book Soil physics with Python to dynamically compute water flow in soil, root water uptake and water flow inside roots. Conclusions:CRootBox is a fast and flexible functional-structural root model that is based on state-of-the-art computational science methods. Its aim is to facilitate modelling of root responses to environmental conditions as well as the impact of roots on soil. In the future, this approach will be extended to the above-ground part of the plant.
journal_name
Ann Botjournal_title
Annals of botanyauthors
Schnepf A,Leitner D,Landl M,Lobet G,Mai TH,Morandage S,Sheng C,Zörner M,Vanderborght J,Vereecken Hdoi
10.1093/aob/mcx221subject
Has Abstractpub_date
2018-04-18 00:00:00pages
1033-1053issue
5eissn
0305-7364issn
1095-8290pii
4844040journal_volume
121pub_type
杂志文章相关文献
ANNALS OF BOTANY文献大全abstract:BACKGROUND AND AIMS:Polyploidy has played a major role in the origin of new plant species, probably because of the expansion of polyploid populations in the species' ecological niche, and because reproductive isolation can be established between a new polyploid population and its diploid progenitor species. It is well ...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcz058
更新日期:2019-08-02 00:00:00
abstract::Although active oxygen species are produced at high rates in both the chloroplasts and peroxisomes of the leaves of C3 plants, most attention has focused on the potentially damaging consequences of enhanced chloroplastic production in stress conditions such as drought. This article attempts to provide quantitative est...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcf096
更新日期:2002-06-01 00:00:00
abstract:Background and Aims:Plants usually compete with neighbouring plants for resources such as light as well as defend themselves against herbivorous insects. This requires investment of limiting resources, resulting in optimal resource distribution patterns and trade-offs between growth- and defence-related traits. A plant...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcx212
更新日期:2018-04-18 00:00:00
abstract:BACKGROUND AND AIMS:Epipogium aphyllum is a Eurasian achlorophyllous, mycoheterotrophic forest orchid. Due to its rarity, it is often protected, and its biology is poorly known. The identity and pattern of colonization of fungal associates providing carbon to this orchid have not been studied previously. METHODS:Using...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcn269
更新日期:2009-08-01 00:00:00
abstract:Background and Aims:Rubus subgenus Rubus is a group of mostly apomictic and polyploid species with a complicated taxonomy and history of ongoing hybridization. The only polyploid series with prevailing sexuality is the series Glandulosi , although the apomictic series Discolores and Radula also retain a high degree of ...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcx033
更新日期:2017-08-01 00:00:00
abstract:BACKGROUND:In this review we report on recent literature concerned with studies of gynodioecy, or the co-occurrence of female and hermaphrodite individuals in natural plant populations. Rather than review this literature in its entirety, our focus is on the interplay between theoretical and empirical approaches to the ...
journal_title:Annals of botany
pub_type: 杂志文章,评审
doi:10.1093/aob/mcp141
更新日期:2009-09-01 00:00:00
abstract:BACKGROUND AND AIMS:Although mangroves have been extensively studied, little is known about their ecological wood anatomy. This investigation examined the potential use of vessel density as a proxy for soil water salinity in the mangrove species Rhizophora mucronata (Rhizophoraceae) from Kenya. METHODS:In a time-stand...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcl224
更新日期:2006-12-01 00:00:00
abstract:BACKGROUND AND AIMS:High temperatures over 32-36 degrees C at anthesis induce spikelet sterility in rice. The use of a germplasm with an early-morning flowering (EMF) trait has been hypothesized as a way of avoiding this problem. In this study, the effect of the EMF trait on avoiding high temperature-induced sterility ...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcq124
更新日期:2010-09-01 00:00:00
abstract:BACKGROUND AND AIMS:The spatial distribution of cytotypes can provide valuable insights into evolutionary patterns of polyploid complexes. In a previous study the macro-scale distribution of the three main cytotypes in Senecio carniolicus (Asteraceae) within the Eastern Alps was characterized. Employing a roughly 12-fo...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcq192
更新日期:2010-12-01 00:00:00
abstract:Background and Aims:Capsella is a model genus for studying the transition from outcrossing to selfing, with or without change in ploidy levels. The genomic consequences and changes in reproductive traits (selfing syndrome) associated with these shifts have been studied in depth. However, potential ecological divergence...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcy014
更新日期:2018-05-11 00:00:00
abstract:Backgrounds and Aims:Gain or loss of floral nectar, an innovation in floral traits, has occurred in diverse lineages of flowering plants, but the causes of reverse transitions (gain of nectar) remain unclear. Phylogenetic studies show multiple gains and losses of floral nectar in the species-rich genus Pedicularis. Her...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcy102
更新日期:2019-01-23 00:00:00
abstract:BACKGROUND AND AIMS:Changes in the amount of repetitive DNA (dispersed and tandem repeats) are considered the main contributors to genome size variation across plant species in the absence of polyploidy. However, the study of repeatome dynamism in groups showing contrasting genomic features and complex evolutionary his...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcz183
更新日期:2020-03-29 00:00:00
abstract:BACKGROUND AND AIMS:Arachis batizocoi is a wild relative of cultivated peanut (A. hypogaea), an allotetraploid with an AABB genome. Arachis batizocoi was once considered the ancestral donor of the peanut B genome, but cytogenetics and DNA phylogenies have indicated a new genome classification, 'K'. These observations s...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcu237
更新日期:2015-02-01 00:00:00
abstract:BACKGROUND:Pollen is the male gametophyte of higher plants. Upon pollination, it germinates and develops into a fast-growing cytoplasmic extension, the pollen tube, which ultimately delivers the sperm into the ovary. The biological relevance of its role, and the uniqueness of this kind of cellular organization, have ma...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcm208
更新日期:2007-12-01 00:00:00
abstract:Background and Aims:Long terminal repeat-retrotransposons (LTR-RTs) comprise a large portion of plant genomes, with massive repeat blocks distributed across the chromosomes. Eleocharis species have holocentric chromosomes, and show a positive correlation between chromosome numbers and the amount of nuclear DNA. To eval...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcy066
更新日期:2018-08-01 00:00:00
abstract:BACKGROUND AND AIMS:In microdensitometry and flow cytometry, estimation of nuclear DNA content in a sample requires a standard with a known nuclear DNA content. It is assumed that dye accessibility to DNA is the same in the sample and standard nuclei. Stoichiometric error arises when dye accessibility is not proportion...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mci006
更新日期:2005-01-01 00:00:00
abstract::The present study evaluated waterlogging tolerance, root porosity and radial O(2) loss (ROL) from the adventitious roots, of seven upland, three paddy, and two deep-water genotypes of rice (Oryza sativa L.). Upland types, with the exception of one genotype, were as tolerant of 30 d soil waterlogging as the paddy and d...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcf114
更新日期:2003-01-01 00:00:00
abstract:BACKGROUND AND AIMS:Sexually deceptive orchids achieve cross-pollination by mimicking the mating signals of female insects, generally hymenopterans. This pollination mechanism is often highly specific as it is based primarily on the mimicry of mating signals, especially the female sex pheromones of the targeted pollina...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcp208
更新日期:2009-11-01 00:00:00
abstract:BACKGROUND AND AIMS:Lessons from above-ground trait ecology and resource economics theory may not be directly translatable to below-ground traits due to differences in function, trade-offs and environmental constraints. Here we examine root functional traits within and across species along a fine-scale hydrological gra...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcaa175
更新日期:2020-09-23 00:00:00
abstract::Young trees 0.03-1.7 m high of three coexisting Betula species were investigated in four sites of varying soil fertility, but all in full daylight, to separate nutrient and plant size controls on leaf dry mass per unit area (MA), light-saturated foliar photosynthetic electron transport rate (J) and the fraction of pla...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcf025
更新日期:2002-02-01 00:00:00
abstract::Elevated CO(2) and ozone effects were studied singly and in combination on the crown structure of two Betula pendula clones. Measurements were made at the end of the second fumigation period in an open-top-chamber experiment with 9-year-old trees. Shoot ramification (number of long and short daughter shoots), shoot le...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcg052
更新日期:2003-04-01 00:00:00
abstract:BACKGROUND AND AIMS:Stigmatic receptivity plays a clear role in pollination dynamics; however, little is known about the factors that confer to a stigma the competence to be receptive for the germination of pollen grains. In this work, a developmental approach is used to evaluate the acquisition of stigmatic receptivit...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcs116
更新日期:2012-08-01 00:00:00
abstract:AIMS AND BACKGROUND:While the temperature response of soil respiration (R(S)) has been well studied, the partitioning of heterotrophic respiration (R(H)) by soil microbes from autotrophic respiration (R(A)) by roots, known to have distinct temperature sensitivities, has been problematic. Further complexity stems from t...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcs073
更新日期:2012-07-01 00:00:00
abstract:BACKGROUND:Most of the water on Earth is seawater, each kilogram of which contains about 35 g of salts, and yet most plants cannot grow in this solution; less than 0·2% of species can develop and reproduce with repeated exposure to seawater. These 'extremophiles' are called halophytes. SCOPE:Improved knowledge of halo...
journal_title:Annals of botany
pub_type:
doi:10.1093/aob/mcu267
更新日期:2015-02-01 00:00:00
abstract:BACKGROUND AND AIMS:The Marantaceae (550 spp.) is the most derived family in the order Zingiberales and exhibits a complex explosive pollination mechanism. To understand the evolutionary significance of this unique process of pollen transfer, comparative morphological and ecological studies were conducted in Gabon. ME...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcp106
更新日期:2009-07-01 00:00:00
abstract:Background and Aims:Interstitial telomeric repeat (ITR) sites, consisting of tandem repeats of telomeric motifs localized at intrachromosomal sites, have been reported in a few unrelated organisms including plants. However, the causes for the occurrence of ITRs outside of the chromosomal termini are not fully understoo...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcy079
更新日期:2018-08-27 00:00:00
abstract:BACKGROUND AND AIMS:Recent studies of reproductive biology in ancient angiosperm lineages are beginning to shed light on the early evolution of flowering plants, but comparative studies are restricted by fragmented and meagre species representation in these angiosperm clades. In the present study, the progamic phase, f...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcp276
更新日期:2010-02-01 00:00:00
abstract:BACKGROUND AND AIMS:Although allopolyploidy is a prevalent speciation mechanism in plants, its adaptive consequences are poorly understood. In addition, the effects of allopolyploidy per se (i.e. hybridization and chromosome doubling) can be confounded with those of subsequent evolutionary divergence between allopolypl...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcl137
更新日期:2006-09-01 00:00:00
abstract:BACKGROUND AND AIMS:It remains unclear whether invasive species can maintain both high biomass and reproductive output across their invaded range. Along latitudinal gradients, allocation theory predicts that faster flowering onset at high latitudes results in maturation at smaller size and thus reduced reproductive out...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcaa110
更新日期:2020-10-30 00:00:00
abstract:BACKGROUND AND AIMS:The evolution of complex rooting systems during the Devonian had significant impacts on global terrestrial ecosystems and the evolution of plant body plans. However, detailed understanding of the pathways of root evolution and the architecture of early rooting systems is currently lacking. We descri...
journal_title:Annals of botany
pub_type: 杂志文章
doi:10.1093/aob/mcw006
更新日期:2016-04-01 00:00:00