Abstract:
:We have developed an improved method for photofootprinting in vivo which utilizes the thermostable DNA polymerase from T. aquaticus (Taq) in a primer extension assay. UV light is used to introduce photoproducts into the genomic DNA of intact yeast cells. The photoproducts are then detected and mapped at the nucleotide level by multiple rounds of annealing and extension using Taq polymerase, which is blocked by photoproducts in the template DNA. The method is more rapid, sensitive, and reproducible than the previously described chemical photofootprinting procedure developed in this laboratory (Nature 325. 173-177), and detects photoproducts with a specificity which is similar, but not identical to that of the previously described procedure. Binding of GAL4 protein to its binding sites within the GAL1-10 upstream activating sequence is demonstrated using the primer extension photofootprinting method. The primer extension assay can also be used to map DNA strand breakage generated by other footprinting methods, and to determine DNA sequence directly from the yeast genome.
journal_name
Nucleic Acids Resjournal_title
Nucleic acids researchauthors
Axelrod JD,Majors Jdoi
10.1093/nar/17.1.171subject
Has Abstractpub_date
1989-01-11 00:00:00pages
171-83issue
1eissn
0305-1048issn
1362-4962journal_volume
17pub_type
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更新日期:2013-02-01 00:00:00
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