Proteomic assessment of host-associated microevolution in the fungus Thielaviopsis basicola.

abstract：:The advances in synthetic biology bring exciting new opportunities to reprogram microorganisms with novel functionalities for environmental applications. For real-world applications, a genetic tool that enables genetic engineering in a stably genomic inherited manner is greatly desired. In this work, we design a novel...

journal_title：Environmental microbiology

authors： Fan YY,Tang Q,Li Y,Li FH,Wu JH,Li WW,Yu HQ

更新日期：2020-12-28 00:00:00

abstract：:Coralline algae are a crucial component of reef systems, stabilising reef substrate, providing habitat and contributing to accretion. Coralline algae and their surface microbial biofilms are also important as settlement cues for marine invertebrates, yet few studies address the impact of future environmental condition...

journal_title：Environmental microbiology

authors： Huggett MJ,McMahon K,Bernasconi R

更新日期：2018-08-01 00:00:00

abstract：:In order to study the effect of different chloroethenes (electron acceptors) on the bacterial composition of dechlorinating communities, two reductive dechlorinating enrichment cultures were developed that were able to reduce trichloroethene (TCE) and cis-1,2-dichloroethene (cis-DCE) to ethene using hydrogen as electr...

journal_title：Environmental microbiology

authors： Gu AZ,Hedlund BP,Staley JT,Strand SE,Stensel HD

更新日期：2004-01-01 00:00:00

abstract：:Metarhizium robertsii occupies a wide array of ecological niches and has diverse lifestyle options (saprophyte, insect pathogen and plant symbiont), that renders it an unusually effective model for studying genetic mechanisms for fungal adaptation. Here over 20,000 M. robertsii T-DNA mutants were screened in order to ...

journal_title：Environmental microbiology

authors： Zeng G,Chen X,Zhang X,Zhang Q,Xu C,Mi W,Guo N,Zhao H,You Y,Dryburgh FJ,Bidochka MJ,St Leger RJ,Zhang L,Fang W

更新日期：2017-10-01 00:00:00

abstract：:In January 1997, the tanker Nakhodka sank in the Japan Sea, and more than 5000 tons of heavy oil leaked. The released oil contaminated more than 500 km of the coastline, and some still remained even by June 1999. To investigate the long-term influence of the Nakhodka oil spill on marine bacterial populations, sea wate...

journal_title：Environmental microbiology

authors： Kasai Y,Kishira H,Syutsubo K,Harayama S

更新日期：2001-04-01 00:00:00

abstract：:The Deepwater Horizon oil spill resulted in a massive influx of hydrocarbons into the Gulf of Mexico (the Gulf). To better understand the fate of the oil, we enriched and isolated indigenous hydrocarbon-degrading bacteria from deep, uncontaminated waters from the Gulf with oil (Macondo MC252) and dispersant used durin...

journal_title：Environmental microbiology

authors： Baelum J,Borglin S,Chakraborty R,Fortney JL,Lamendella R,Mason OU,Auer M,Zemla M,Bill M,Conrad ME,Malfatti SA,Tringe SG,Holman HY,Hazen TC,Jansson JK

更新日期：2012-09-01 00:00:00

abstract：:Studies assessing the effects of anthropogenic inputs on the taxonomic and functional diversity of bacterioplankton communities in lotic ecosystems are limited. Here, we applied 16S rRNA gene amplicon and whole-genome shotgun sequencing to examine the microbial diversity in samples from the Kalamas River (Northwest Gr...

journal_title：Environmental microbiology

authors： Meziti A,Tsementzi D,Ar Kormas K,Karayanni H,Konstantinidis KT

更新日期：2016-12-01 00:00:00

abstract：:Raphidiopsis raciborskii is an invasive bloom-forming cyanobacteria with the flexibility to utilize atmospheric and fixed nitrogen. Since nitrogen-fixation has a high requirement for iron as an ezyme cofactor, we hypothesize that iron availability would determine the success of the species under nitrogen-fixing condit...

journal_title：Environmental microbiology

authors： D'Agostino PM,Yeung ACY,Poljak A,David Waite T,Neilan BA

更新日期：2021-01-01 00:00:00

abstract：:To reveal mycovirus diversity, we conducted a search of as-yet-unexplored Mediterranean isolates of the phytopathogenic ascomycete Rosellinia necatrix for virus infections. Of seventy-nine, eleven fungal isolates tested RNA virus-positive, with many showing coinfections, indicating a virus incidence of 14%, which is s...

journal_title：Environmental microbiology

authors： Arjona-Lopez JM,Telengech P,Jamal A,Hisano S,Kondo H,Yelin MD,Arjona-Girona I,Kanematsu S,Lopez-Herrera CJ,Suzuki N

更新日期：2018-04-01 00:00:00

abstract：:Although Escherichia coli is an important model organism for bacterial research, few studies have explored the nature of temporal variation in E. coli strains within the intestinal tracts of host individuals. In this study the E. coli strains of 54 mountain brushtail possums were sampled on four occasions during a yea...

journal_title：Environmental microbiology

authors： Blyton MD,Banks SC,Peakall R,Gordon DM

更新日期：2013-08-01 00:00:00

abstract：:To determine whether the distribution of estuarine ammonia-oxidizing bacteria (AOB) was influenced by salinity, the community structure of betaproteobacterial ammonia oxidizers (AOB) was characterized along a salinity gradient in sediments of the Ythan estuary, on the east coast of Scotland, UK, by denaturant gradient...

journal_title：Environmental microbiology

authors： Freitag TE,Chang L,Prosser JI

更新日期：2006-04-01 00:00:00

abstract：:Biuret is a minor component of urea fertilizer and an intermediate in s-triazine herbicide biodegradation. The microbial metabolism of biuret has never been comprehensively studied. Here, we enriched and isolated bacteria from a potato field that grew on biuret as a sole nitrogen source. We sequenced the genome of the...

journal_title：Environmental microbiology

authors： Robinson SL,Badalamenti JP,Dodge AG,Tassoulas LJ,Wackett LP

更新日期：2018-06-01 00:00:00

abstract：:A laboratory scale sequencing batch reactor (SBR) operating for enhanced biological phosphorus removal (EBPR) and fed with a mixture of volatile fatty acids (VFAs) showed stable and efficient EBPR capacity over a four-year-period. Phosphorus (P), poly-beta-hydroxyalkanoate (PHA) and glycogen cycling consistent with cl...

journal_title：Environmental microbiology

authors： Levantesi C,Serafim LS,Crocetti GR,Lemos PC,Rossetti S,Blackall LL,Reis MA,Tandoi V

更新日期：2002-10-01 00:00:00

abstract：:Although common knowledge dictates that the lichen thallus is formed solely by a fungus (mycobiont) that develops a symbiotic relationship with an alga and/or cyanobacterium (photobiont), the non-photoautotrophic bacteria found in lichen microbiomes are increasingly regarded as integral components of lichen thalli. Fo...

journal_title：Environmental microbiology

authors： Hodkinson BP,Gottel NR,Schadt CW,Lutzoni F

更新日期：2012-01-01 00:00:00

abstract：:The underlying mechanisms of microbial community assembly in connective coastal environments are unclear. The coastal water area of northern Zhejiang, East China Sea, is a complex marine ecosystem with multiple environmental gradients, where the distributions and determinants of bacterioplankton communities remain unc...

journal_title：Environmental microbiology

authors： Wang K,Ye X,Chen H,Zhao Q,Hu C,He J,Qian Y,Xiong J,Zhu J,Zhang D

更新日期：2015-10-01 00:00:00

abstract：:Cyanobacteria are important primary producers in many marine ecosystems and their abundances and growth rates depend on their ability to assimilate various nitrogen sources. To examine the diversity of nitrate-utilizing marine cyanobacteria, we developed PCR primers specific for cyanobacterial assimilatory nitrate red...

journal_title：Environmental microbiology

authors： Jenkins BD,Zehr JP,Gibson A,Campbell L

更新日期：2006-12-01 00:00:00

abstract：:Interactions between phytoplankton and bacteria play major roles in global biogeochemical cycles and oceanic nutrient fluxes. These interactions occur in the microenvironment surrounding phytoplankton cells, known as the phycosphere. Bacteria in the phycosphere use either chemotaxis or attachment to benefit from algal...

journal_title：Environmental microbiology

authors： Fei C,Ochsenkühn MA,Shibl AA,Isaac A,Wang C,Amin SA

更新日期：2020-11-01 00:00:00

abstract：:Microbial reduction of soluble selenium (Se) or tellurium (Te) species results in immobilization as elemental forms and this process has been employed in soil bioremediation. However, little is known of direct and indirect fungal interactions with Se-/Te-bearing ores. In this research, the ability of Phoma glomerata t...

journal_title：Environmental microbiology

authors： Liang X,Perez MAM,Zhang S,Song W,Armstrong JG,Bullock LA,Feldmann J,Parnell J,Csetenyi L,Gadd GM

更新日期：2020-06-01 00:00:00

abstract：:Fungi can be highly efficient biogeochemical agents and accumulators of soluble and particulate forms of metals. This work aims to understand some of the physico-chemical mechanisms involved in toxic metal transformations focusing on the speciation of metals accumulated by fungi and mycorrhizal associations. The amorp...

journal_title：Environmental microbiology

authors： Fomina M,Charnock J,Bowen AD,Gadd GM

更新日期：2007-02-01 00:00:00

abstract：:Many bacterial genes and virulence factors are regulated by interbacterial and/or host-parasite chemical signals. We demonstrate that toxin production by a free-living freshwater cyanobacterium is regulated in part by the presence of extracellular products of a eukaryotic green alga. In growth experiments, extracellul...

journal_title：Environmental microbiology

authors： Kearns KD,Hunter MD

更新日期：2000-06-01 00:00:00

abstract：:The distribution of nitrifying bacteria of the genera Nitrosomonas, Nitrosospira, Nitrobacter and Nitrospira was investigated in a membrane-bound biofilm system with opposed supply of oxygen and ammonium. Gradients of oxygen, pH, nitrite and nitrate were determined by means of microsensors while the nitrifying populat...

journal_title：Environmental microbiology

authors： Schramm A,De Beer D,Gieseke A,Amann R

更新日期：2000-12-01 00:00:00

abstract：:The release of abiotic methane from marine seeps into the atmosphere is a major source of this potent greenhouse gas. Methanotrophic microorganisms in methane seeps use methane as carbon and energy source, thus significantly mitigating global methane emissions. Here, we investigated microbial methane oxidation at the ...

journal_title：Environmental microbiology

authors： Taubert M,Grob C,Crombie A,Howat AM,Burns OJ,Weber M,Lott C,Kaster AK,Vollmers J,Jehmlich N,von Bergen M,Chen Y,Murrell JC

更新日期：2019-10-01 00:00:00

abstract：:Molecular signatures of new, as yet uncultured mollicute-like organisms (MLOs) have been detected in total rRNA and DNA extracted from tissues, gut contents and casts of four species of the earthworm family Lumbricidae. The MLO 16S rRNA sequences exhibited low identity to those of known Mollicutes species and formed a...

journal_title：Environmental microbiology

authors： Nechitaylo TY,Timmis KN,Golyshin PN

更新日期：2009-04-01 00:00:00

abstract：:Yersinia ruckeri is the causative agent of enteric redmouth in fish and one of the major bacterial pathogens causing losses in salmonid aquaculture. Previously typing methods, including restriction enzyme analysis, pulsed-field gel electrophoresis and multilocus enzyme electrophoresis (MLEE) have indicated a clonal po...

journal_title：Environmental microbiology

authors： Bastardo A,Ravelo C,Romalde JL

更新日期：2012-08-01 00:00:00

abstract：:The bacteria in the fruitfly Drosophila melanogaster of different life stages was quantified by 454 pyrosequencing of 16S rRNA gene amplicons. The sequence reads were dominated by 5 operational taxonomic units (OTUs) at ≤ 97% sequence identity that could be assigned to Acetobacter pomorum, A. tropicalis, Lactobacillus...

journal_title：Environmental microbiology

authors： Wong CN,Ng P,Douglas AE

更新日期：2011-07-01 00:00:00

abstract：:The biofilm phenotype of Pseudomonas aeruginosa enables this opportunistic pathogen to develop resistance to the immune system and antimicrobial agents. Pseudomonas aeruginosa biofilms are generated under varying levels of shear stress, depending on the infection site. In the lung mucus of cystic fibrosis (CF) patient...

journal_title：Environmental microbiology

authors： Crabbé A,De Boever P,Van Houdt R,Moors H,Mergeay M,Cornelis P

更新日期：2008-08-01 00:00:00

abstract：:Organisms at hydrothermal vents inhabit discontinuous chemical 'islands' along mid-ocean ridges, a scenario that may promote genetic divergence among populations. The 2003 discovery of mussels at the Lost City Hydrothermal Field provided a means of evaluating factors that govern the biogeography of symbiotic bacteria ...

journal_title：Environmental microbiology

authors： DeChaine EG,Bates AE,Shank TM,Cavanaugh CM

更新日期：2006-11-01 00:00:00

abstract：:Antibiotics are routinely used in modern livestock farming. The manure from medicated animals is used for the fertilization of arable crops, which in turn leads to the accumulation of antibiotic resistance genes (ARGs) in the environment. This is a potentially serious public health issue, yet the identities of the bac...

journal_title：Environmental microbiology

authors： Leclercq SO,Wang C,Sui Z,Wu H,Zhu B,Deng Y,Feng J

更新日期：2016-10-01 00:00:00

abstract：:Microbial community analysis via high-throughput sequencing of amplified 16S rRNA genes is an essential microbiology tool. We found the popular primer pair 515F (515F-C) and 806R greatly underestimated (e.g. SAR11) or overestimated (e.g. Gammaproteobacteria) common marine taxa. We evaluated marine samples and mock com...

journal_title：Environmental microbiology

authors： Parada AE,Needham DM,Fuhrman JA

更新日期：2016-05-01 00:00:00

abstract：:The contribution of Chloroflexi-type SAR202 cells to total picoplankton and bacterial abundance and uptake of D- and L-aspartic acids (Asp) was determined in the different meso- and bathypelagic water masses of the (sub)tropical Atlantic (from 35 degrees N to 5 degrees S). Fluorescence in situ hybridization (FISH) rev...

journal_title：Environmental microbiology

authors： Varela MM,van Aken HM,Herndl GJ

更新日期：2008-07-01 00:00:00