Conventional wisdom.

Abstract:

:Recent agreement on stable reference sequences for reporting human genetic variants now allows us to mandate the use of the allele naming conventions developed by the Human Genome Variation Society.

journal_name

Nat Genet

journal_title

Nature genetics

authors

doi

10.1038/ng0510-363

subject

Has Abstract

pub_date

2010-05-01 00:00:00

pages

363

issue

5

eissn

1061-4036

issn

1546-1718

pii

ng0510-363

journal_volume

42

pub_type

社论
  • Population genomic analysis of outcrossing and recombination in yeast.

    abstract::The budding yeast Saccharomyces cerevisiae has been used by humans for millennia to make wine, beer and bread. More recently, it became a key model organism for studies of eukaryotic biology and for genomic analysis. However, relatively little is known about the natural lifestyle and population genetics of yeast. One ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1859

    authors: Ruderfer DM,Pratt SC,Seidel HS,Kruglyak L

    更新日期:2006-09-01 00:00:00

  • Mutations in SNORD118 cause the cerebral microangiopathy leukoencephalopathy with calcifications and cysts.

    abstract::Although ribosomes are ubiquitous and essential for life, recent data indicate that monogenic causes of ribosomal dysfunction can confer a remarkable degree of specificity in terms of human disease phenotype. Box C/D small nucleolar RNAs (snoRNAs) are evolutionarily conserved non-protein-coding RNAs involved in riboso...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3661

    authors: Jenkinson EM,Rodero MP,Kasher PR,Uggenti C,Oojageer A,Goosey LC,Rose Y,Kershaw CJ,Urquhart JE,Williams SG,Bhaskar SS,O'Sullivan J,Baerlocher GM,Haubitz M,Aubert G,Barañano KW,Barnicoat AJ,Battini R,Berger A,Blair EM

    更新日期:2016-10-01 00:00:00

  • Soundbites.

    abstract::Dentinogenesis imperfecta (DGI) is characterized by discolored teeth with an opalescent sheen and dentin that fails to support enamel, causing it to easily chip. Two new studies show that DGI is associated with mutations in DSPP, a gene encoding dentin sialophosphoprotein that is processed into two proteins: dentin si...

    journal_title:Nature genetics

    pub_type: 评论,杂志文章

    doi:10.1038/84728

    authors: Patel P

    更新日期:2001-02-01 00:00:00

  • Genome-wide association analysis of 19,629 individuals identifies variants influencing regional brain volumes and refines their genetic co-architecture with cognitive and mental health traits.

    abstract::Volumetric variations of the human brain are heritable and are associated with many brain-related complex traits. Here we performed genome-wide association studies (GWAS) of 101 brain volumetric phenotypes using the UK Biobank sample including 19,629 participants. GWAS identified 365 independent genetic variants excee...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/s41588-019-0516-6

    authors: Zhao B,Luo T,Li T,Li Y,Zhang J,Shan Y,Wang X,Yang L,Zhou F,Zhu Z,Alzheimer’s Disease Neuroimaging Initiative.,Pediatric Imaging, Neurocognition and Genetics.,Zhu H

    更新日期:2019-11-01 00:00:00

  • Mutation of ALMS1, a large gene with a tandem repeat encoding 47 amino acids, causes Alström syndrome.

    abstract::Alström syndrome (OMIM 203800) is an autosomal recessive disease, characterized by cone-rod retinal dystrophy, cardiomyopathy and type 2 diabetes mellitus, that has been mapped to chromosome 2p13 (refs 1-5). We have studied an individual with Alström syndrome carrying a familial balanced reciprocal chromosome transloc...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng874

    authors: Hearn T,Renforth GL,Spalluto C,Hanley NA,Piper K,Brickwood S,White C,Connolly V,Taylor JF,Russell-Eggitt I,Bonneau D,Walker M,Wilson DI

    更新日期:2002-05-01 00:00:00

  • Probabilistic fine-mapping of transcriptome-wide association studies.

    abstract::Transcriptome-wide association studies using predicted expression have identified thousands of genes whose locally regulated expression is associated with complex traits and diseases. In this work, we show that linkage disequilibrium induces significant gene-trait associations at non-causal genes as a function of the ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/s41588-019-0367-1

    authors: Mancuso N,Freund MK,Johnson R,Shi H,Kichaev G,Gusev A,Pasaniuc B

    更新日期:2019-04-01 00:00:00

  • Plectin deficiency results in muscular dystrophy with epidermolysis bullosa.

    abstract::We report that mutation in the gene for plectin, a cytoskeleton-membrane anchorage protein, is a cause of autosomal recessive muscular dystrophy associated with skin blistering (epidermolysis bullosa simplex). The evidence comes from absence of plectin by antibody staining in affected individuals from four families, s...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0896-450

    authors: Smith FJ,Eady RA,Leigh IM,McMillan JR,Rugg EL,Kelsell DP,Bryant SP,Spurr NK,Geddes JF,Kirtschig G,Milana G,de Bono AG,Owaribe K,Wiche G,Pulkkinen L,Uitto J,McLean WH,Lane EB

    更新日期:1996-08-01 00:00:00

  • Systematic assessment of copy number variant detection via genome-wide SNP genotyping.

    abstract::SNP genotyping has emerged as a technology to incorporate copy number variants (CNVs) into genetic analyses of human traits. However, the extent to which SNP platforms accurately capture CNVs remains unclear. Using independent, sequence-based CNV maps, we find that commonly used SNP platforms have limited or no probe ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.236

    authors: Cooper GM,Zerr T,Kidd JM,Eichler EE,Nickerson DA

    更新日期:2008-10-01 00:00:00

  • Another piece of the autism puzzle.

    abstract::A new study has identified rare de novo mutations in SHANK2 in individuals with autism and/or mental retardation. SHANK2 encodes a scaffolding protein present in excitatory synapses. This finding sheds some light on the pathophysiology of social and cognitive disability. ...

    journal_title:Nature genetics

    pub_type: 评论,新闻

    doi:10.1038/ng0610-478

    authors: State MW

    更新日期:2010-06-01 00:00:00

  • Ataxia with isolated vitamin E deficiency is caused by mutations in the alpha-tocopherol transfer protein.

    abstract::Ataxia with isolated vitamin E deficiency (AVED) is an autosomal recessive neurodegenerative disease which maps to chromosome 8q13. AVED patients have an impaired ability to incorporate alpha-tocopherol into lipoproteins secreted by the liver, a function putatively attributable to the alpha-tocopherol transfer protein...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0295-141

    authors: Ouahchi K,Arita M,Kayden H,Hentati F,Ben Hamida M,Sokol R,Arai H,Inoue K,Mandel JL,Koenig M

    更新日期:1995-02-01 00:00:00

  • ATM and RPA in meiotic chromosome synapsis and recombination.

    abstract::ATM is a member of the phosphatidylinositol 3-kinase (PIK)-like kinases, some of which are active in regulating DNA damage-induced mitotic cell-cycle checkpoints. ATM also plays a role in meiosis. Spermatogenesis in Atm-/- male mice is disrupted, with chromosome fragmentation leading to meiotic arrest; in human patien...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1297-457

    authors: Plug AW,Peters AH,Xu Y,Keegan KS,Hoekstra MF,Baltimore D,de Boer P,Ashley T

    更新日期:1997-12-01 00:00:00

  • A gene encoding a liver-specific ABC transporter is mutated in progressive familial intrahepatic cholestasis.

    abstract::The progressive familial intrahepatic cholestases (PFIC) are a group of inherited disorders with severe cholestatic liver disease from early infancy. A subgroup characterized by normal serum cholesterol and gamma-glutamyltranspeptidase (gammaGT) levels is genetically heterogeneous with loci on chromosomes 2q (PFIC2) a...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/3034

    authors: Strautnieks SS,Bull LN,Knisely AS,Kocoshis SA,Dahl N,Arnell H,Sokal E,Dahan K,Childs S,Ling V,Tanner MS,Kagalwalla AF,Németh A,Pawlowska J,Baker A,Mieli-Vergani G,Freimer NB,Gardiner RM,Thompson RJ

    更新日期:1998-11-01 00:00:00

  • Genome-wide association study identifies five loci associated with susceptibility to pancreatic cancer in Chinese populations.

    abstract::Pancreatic cancer has the lowest survival rate among human cancers, and there are no effective markers for its screening and early diagnosis. To identify genetic susceptibility markers for this cancer, we carried out a genome-wide association study on 981 individuals with pancreatic cancer (cases) and 1,991 cancer-fre...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.1020

    authors: Wu C,Miao X,Huang L,Che X,Jiang G,Yu D,Yang X,Cao G,Hu Z,Zhou Y,Zuo C,Wang C,Zhang X,Zhou Y,Yu X,Dai W,Li Z,Shen H,Liu L,Chen Y,Zhang S,Wang X,Zhai K,Chang J,Liu Y,Sun M,Cao W,Gao J,Ma Y,Zheng X

    更新日期:2011-12-11 00:00:00

  • Correcting CRISPR for copy number.

    abstract::The CRISPR-Cas9 system enables global screens of gene function with high sensitivity and specificity, but off-target effects have been reported for CRISPR guide RNAs targeting genes that are amplified at high copy number. A new study describes a computational approach to correct for this copy number effect, increasing...

    journal_title:Nature genetics

    pub_type: 评论,杂志文章

    doi:10.1038/ng.3994

    authors: Shen JP,Ideker T

    更新日期:2017-11-29 00:00:00

  • Epilepsy and brain abnormalities in mice lacking the Otx1 gene.

    abstract::The morphogenesis of the brain and the differentiation of the neural structures are highly complex processes. A series of temporally and spatially regulated morphogenetic events gives rise to smaller areas that are phylogenetically, functionally and often morphogenetically different. Candidate genes for positional inf...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1096-218

    authors: Acampora D,Mazan S,Avantaggiato V,Barone P,Tuorto F,Lallemand Y,Brûlet P,Simeone A

    更新日期:1996-10-01 00:00:00

  • Mutations in embryonic myosin heavy chain (MYH3) cause Freeman-Sheldon syndrome and Sheldon-Hall syndrome.

    abstract::The genetic basis of most conditions characterized by congenital contractures is largely unknown. Here we show that mutations in the embryonic myosin heavy chain (MYH3) gene cause Freeman-Sheldon syndrome (FSS), one of the most severe multiple congenital contracture (that is, arthrogryposis) syndromes, and nearly one-...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1775

    authors: Toydemir RM,Rutherford A,Whitby FG,Jorde LB,Carey JC,Bamshad MJ

    更新日期:2006-05-01 00:00:00

  • Molecular basis of Thomsen's disease (autosomal dominant myotonia congenita).

    abstract::Thomsen's disease (autosomal dominant myotonia congenita) has recently been linked to chromosome 7q35 in the region of the human skeletal muscle chloride channel gene (HUMCLC). Single strand conformation polymorphism analysis (SSCP) was used to screen DNA from members of four unrelated pedigrees with this disorder for...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0493-305

    authors: George AL Jr,Crackower MA,Abdalla JA,Hudson AJ,Ebers GC

    更新日期:1993-04-01 00:00:00

  • Targeted mutation in the col5a2 gene reveals a regulatory role for type V collagen during matrix assembly.

    abstract::The tissue-specific organization of collagen molecules into tridimensional macroaggregates determines the physiomechanical properties of most connective tissues, but the factors and mechanisms controlling this process are unknown. It has been postulated that quantitatively minor types V and XI collagen regulate the gr...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0195-31

    authors: Andrikopoulos K,Liu X,Keene DR,Jaenisch R,Ramirez F

    更新日期:1995-01-01 00:00:00

  • Regulatory defects in liver and intestine implicate abnormal hepcidin and Cybrd1 expression in mouse hemochromatosis.

    abstract::Individuals with hereditary hemochromatosis suffer from systemic iron overload due to duodenal hyperabsorption. Most cases arise from a founder mutation in HFE (845G-->A; ref. 2) that results in the amino-acid substitution C282Y and prevents the association of HFE with beta2-microglobulin. Mice homozygous with respect...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1152

    authors: Muckenthaler M,Roy CN,Custodio AO,Miñana B,deGraaf J,Montross LK,Andrews NC,Hentze MW

    更新日期:2003-05-01 00:00:00

  • A mutant PTH/PTHrP type I receptor in enchondromatosis.

    abstract::Enchondromas are common benign cartilage tumors of bone. They can occur as solitary lesions or as multiple lesions in enchondromatosis (Ollier and Maffucci diseases). Clinical problems caused by enchondromas include skeletal deformity and the potential for malignant change to chondrosarcoma. The extent of skeletal inv...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng844

    authors: Hopyan S,Gokgoz N,Poon R,Gensure RC,Yu C,Cole WG,Bell RS,Jüppner H,Andrulis IL,Wunder JS,Alman BA

    更新日期:2002-03-01 00:00:00

  • A missense mutation in the neuronal nicotinic acetylcholine receptor alpha 4 subunit is associated with autosomal dominant nocturnal frontal lobe epilepsy.

    abstract::Epilepsy affects at least 2% of the population at some time in their lives. The epilepsies are a heterogeneous group of disorders, many with an inherited component. Although specific genes have been identified in a few rare diseases causing seizures as part of a more diffuse brain disorder, the molecular pathology of ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1095-201

    authors: Steinlein OK,Mulley JC,Propping P,Wallace RH,Phillips HA,Sutherland GR,Scheffer IE,Berkovic SF

    更新日期:1995-10-01 00:00:00

  • LMNA, encoding lamin A/C, is mutated in partial lipodystrophy.

    abstract::The lipodystrophies are a group of disorders characterized by the absence or reduction of subcutaneous adipose tissue. Partial lipodystrophy (PLD; MIM 151660) is an inherited condition in which a regional (trunk and limbs) loss of fat occurs during the peri-pubertal phase. Additionally, variable degrees of resistance ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/72807

    authors: Shackleton S,Lloyd DJ,Jackson SN,Evans R,Niermeijer MF,Singh BM,Schmidt H,Brabant G,Kumar S,Durrington PN,Gregory S,O'Rahilly S,Trembath RC

    更新日期:2000-02-01 00:00:00

  • Cas9 activates the p53 pathway and selects for p53-inactivating mutations.

    abstract::Cas9 is commonly introduced into cell lines to enable CRISPR-Cas9-mediated genome editing. Here, we studied the genetic and transcriptional consequences of Cas9 expression itself. Gene expression profiling of 165 pairs of human cancer cell lines and their Cas9-expressing derivatives revealed upregulation of the p53 pa...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/s41588-020-0623-4

    authors: Enache OM,Rendo V,Abdusamad M,Lam D,Davison D,Pal S,Currimjee N,Hess J,Pantel S,Nag A,Thorner AR,Doench JG,Vazquez F,Beroukhim R,Golub TR,Ben-David U

    更新日期:2020-07-01 00:00:00

  • Identification of enterotoxigenic Escherichia coli (ETEC) clades with long-term global distribution.

    abstract::Enterotoxigenic Escherichia coli (ETEC), a major cause of infectious diarrhea, produce heat-stable and/or heat-labile enterotoxins and at least 25 different colonization factors that target the intestinal mucosa. The genes encoding the enterotoxins and most of the colonization factors are located on plasmids found acr...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3145

    authors: von Mentzer A,Connor TR,Wieler LH,Semmler T,Iguchi A,Thomson NR,Rasko DA,Joffre E,Corander J,Pickard D,Wiklund G,Svennerholm AM,Sjöling Å,Dougan G

    更新日期:2014-12-01 00:00:00

  • Microarray databases: standards and ontologies.

    abstract::A single microarray can provide information on the expression of tens of thousands of genes. The amount of information generated by a microarray-based experiment is sufficiently large that no single study can be expected to mine each nugget of scientific information. As a consequence, the scale and complexity of micro...

    journal_title:Nature genetics

    pub_type: 杂志文章,评审

    doi:10.1038/ng1028

    authors: Stoeckert CJ Jr,Causton HC,Ball CA

    更新日期:2002-12-01 00:00:00

  • Heterozygous missense mutations in BSCL2 are associated with distal hereditary motor neuropathy and Silver syndrome.

    abstract::Distal hereditary motor neuropathy (dHMN) or distal spinal muscular atrophy (OMIM #182960) is a heterogeneous group of disorders characterized by an almost exclusive degeneration of motor nerve fibers, predominantly in the distal part of the limbs. Silver syndrome (OMIM #270685) is a rare form of hereditary spastic pa...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng1313

    authors: Windpassinger C,Auer-Grumbach M,Irobi J,Patel H,Petek E,Hörl G,Malli R,Reed JA,Dierick I,Verpoorten N,Warner TT,Proukakis C,Van den Bergh P,Verellen C,Van Maldergem L,Merlini L,De Jonghe P,Timmerman V,Crosby AH,Wagn

    更新日期:2004-03-01 00:00:00

  • Understanding multicellular function and disease with human tissue-specific networks.

    abstract::Tissue and cell-type identity lie at the core of human physiology and disease. Understanding the genetic underpinnings of complex tissues and individual cell lineages is crucial for developing improved diagnostics and therapeutics. We present genome-wide functional interaction networks for 144 human tissues and cell t...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.3259

    authors: Greene CS,Krishnan A,Wong AK,Ricciotti E,Zelaya RA,Himmelstein DS,Zhang R,Hartmann BM,Zaslavsky E,Sealfon SC,Chasman DI,FitzGerald GA,Dolinski K,Grosser T,Troyanskaya OG

    更新日期:2015-06-01 00:00:00

  • Autosomal dominant cerebellar ataxia (SCA6) associated with small polyglutamine expansions in the alpha 1A-voltage-dependent calcium channel.

    abstract::A polymorphic CAG repeat was identified in the human alpha 1A voltage-dependent calcium channel subunit. To test the hypothesis that expansion of this CAG repeat could be the cause of an inherited progressive ataxia, we genotyped a large number of unrelated controls and ataxia patients. Eight unrelated patients with l...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng0197-62

    authors: Zhuchenko O,Bailey J,Bonnen P,Ashizawa T,Stockton DW,Amos C,Dobyns WB,Subramony SH,Zoghbi HY,Lee CC

    更新日期:1997-01-01 00:00:00

  • Mutations in X-linked PORCN, a putative regulator of Wnt signaling, cause focal dermal hypoplasia.

    abstract::Focal dermal hypoplasia is an X-linked dominant disorder characterized by patchy hypoplastic skin and digital, ocular and dental malformations. We used array comparative genomic hybridization to identify a 219-kb deletion in Xp11.23 in two affected females. We sequenced genes in this region and found heterozygous and ...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng2057

    authors: Wang X,Reid Sutton V,Omar Peraza-Llanes J,Yu Z,Rosetta R,Kou YC,Eble TN,Patel A,Thaller C,Fang P,Van den Veyver IB

    更新日期:2007-07-01 00:00:00

  • Meta-analysis of three genome-wide association studies identifies susceptibility loci for colorectal cancer at 1q41, 3q26.2, 12q13.13 and 20q13.33.

    abstract::Genome-wide association studies (GWAS) have identified ten loci harboring common variants that influence risk of developing colorectal cancer (CRC). To enhance the power to identify additional CRC risk loci, we conducted a meta-analysis of three GWAS from the UK which included a total of 3,334 affected individuals (ca...

    journal_title:Nature genetics

    pub_type: 杂志文章

    doi:10.1038/ng.670

    authors: Houlston RS,Cheadle J,Dobbins SE,Tenesa A,Jones AM,Howarth K,Spain SL,Broderick P,Domingo E,Farrington S,Prendergast JG,Pittman AM,Theodoratou E,Smith CG,Olver B,Walther A,Barnetson RA,Churchman M,Jaeger EE,Penegar

    更新日期:2010-11-01 00:00:00