Comparative mouse brain tractography of diffusion magnetic resonance imaging.

Abstract:

:Diffusion magnetic resonance imaging (dMRI) tractography can be employed to simultaneously analyze three-dimensional white matter tracts in the brain. Numerous methods have been proposed to model diffusion-weighted magnetic resonance data for tractography, and we have explored the functionality of some of these for studying white and grey matter pathways in ex vivo mouse brain. Using various deterministic and probabilistic algorithms across a range of regions of interest we found that probabilistic tractography provides a more robust means of visualizing both white and grey matter pathways than deterministic tractography. Importantly, we demonstrate the sensitivity of probabilistic tractography profiles to streamline number, step size, curvature, fiber orientation distribution threshold, and wholebrain versus region of interest seeding. Using anatomically well-defined corticothalamic pathways, we show how projection maps can permit the topographical assessment of probabilistic tractography. Finally, we show how different tractography approaches can impact on dMRI assessment of tract changes in a mouse deficient for the frontal cortex morphogen, fibroblast growth factor 17. In conclusion, probabilistic tractography can elucidate the phenotypes of mice with neurodegenerative or neurodevelopmental disorders in a quantitative manner.

journal_name

Neuroimage

journal_title

NeuroImage

authors

Moldrich RX,Pannek K,Hoch R,Rubenstein JL,Kurniawan ND,Richards LJ

doi

10.1016/j.neuroimage.2010.03.035

subject

Has Abstract

pub_date

2010-07-01 00:00:00

pages

1027-36

issue

3

eissn

1053-8119

issn

1095-9572

pii

S1053-8119(10)00322-8

journal_volume

51

pub_type

杂志文章
  • Memory of music: roles of right hippocampus and left inferior frontal gyrus.

    abstract::We investigated neural correlates of retrieval success for music memory using event-related functional magnetic resonance imaging. To minimize the interference from MRI scan noise, we used sparse temporal sampling technique. Newly composed music materials were employed as stimuli, which enabled us to detect regions in...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2007.08.024

    authors: Watanabe T,Yagishita S,Kikyo H

    更新日期:2008-01-01 00:00:00

  • Exploring experimental autoimmune optic neuritis using multimodal imaging.

    abstract:BACKGROUND:Neuro-axonal injury is a key contributor to non-reversible long-term disability in multiple sclerosis (MS). However, the underlying mechanisms are not yet fully understood. Visual impairment is common among MS patients, in which episodes of optic neuritis (ON) are often followed by structural retinal damage ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2018.04.004

    authors: Manogaran P,Walker-Egger C,Samardzija M,Waschkies C,Grimm C,Rudin M,Schippling S

    更新日期:2018-07-15 00:00:00

  • Cerebral artery segmentation based on magnetization-prepared two rapid acquisition gradient echo multi-contrast images in 7 Tesla magnetic resonance imaging.

    abstract::Cerebral artery segmentation plays an important role in the direct visualization of the human brain to obtain vascular system information. On ultra-high field magnetic resonance imaging, cerebral arteries appearing hyperintense on T1 weighted (T1w) images could be segmented from brain tissues such as gray and white ma...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2020.117259

    authors: Choi US,Kawaguchi H,Kida I

    更新日期:2020-11-15 00:00:00

  • Adaptive and aberrant reward prediction signals in the human brain.

    abstract::Theories of the positive symptoms of schizophrenia hypothesize a role for aberrant reinforcement signaling driven by dysregulated dopamine transmission. Recently, we provided evidence of aberrant reward learning in symptomatic, but not asymptomatic patients with schizophrenia, using a novel paradigm, the Salience Attr...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2009.11.075

    authors: Roiser JP,Stephan KE,den Ouden HE,Friston KJ,Joyce EM

    更新日期:2010-04-01 00:00:00

  • The functional anatomy of single-digit arithmetic in children with developmental dyslexia.

    abstract::Some arithmetic procedures, such as addition of small numbers, rely on fact retrieval mechanisms supported by left hemisphere perisylvian language areas, while others, such as subtraction, rely on procedural-based mechanisms subserved by bilateral parietal cortices. Previous work suggests that developmental dyslexia, ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2014.07.028

    authors: Evans TM,Flowers DL,Napoliello EM,Olulade OA,Eden GF

    更新日期:2014-11-01 00:00:00

  • The posterior cingulate and medial prefrontal cortex mediate the anticipatory allocation of spatial attention.

    abstract::The purpose of this study was to identify brain regions underlying internally generated anticipatory biases toward locations where significant events are expected to occur. Subjects fixated centrally and responded to peripheral targets preceded by a spatially valid (predictive), invalid (misleading), or neutral centra...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/s1053-8119(02)00012-5

    authors: Small DM,Gitelman DR,Gregory MD,Nobre AC,Parrish TB,Mesulam MM

    更新日期:2003-03-01 00:00:00

  • Reduced functional segregation between the default mode network and the executive control network in healthy older adults: A longitudinal study.

    abstract::The effects of age on functional connectivity (FC) of intrinsic connectivity networks (ICNs) have largely been derived from cross-sectional studies. Far less is known about longitudinal changes in FC and how they relate to ageing-related cognitive decline. We evaluated intra- and inter-network FC in 78 healthy older a...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2016.03.029

    authors: Ng KK,Lo JC,Lim JKW,Chee MWL,Zhou J

    更新日期:2016-06-01 00:00:00

  • Coupling of gamma band activity to sleep spindle oscillations - a combined EEG/MEG study.

    abstract::Sleep spindles are crucial to memory consolidation. Cortical gamma oscillations (30-100 Hz) are considered to reflect processing of memory in local cortical networks. The temporal and regulatory relationship between spindles and gamma activity might therefore provide clues into how sleep strengthens cortical memory re...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2020.117452

    authors: Weber FD,Supp GG,Klinzing JG,Mölle M,Engel AK,Born J

    更新日期:2021-01-01 00:00:00

  • Local temporal variability reflects functional integration in the human brain.

    abstract::Local moment-to-moment variability exists at every level of neural organization, but its driving forces remain opaque. Inspired by animal work demonstrating that local temporal variability may reflect synaptic input rather than locally-generated "noise," we used publicly-available high-temporal-resolution fMRI data (N...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2018.08.019

    authors: Garrett DD,Epp SM,Perry A,Lindenberger U

    更新日期:2018-12-01 00:00:00

  • Neural correlates of artificial grammar learning.

    abstract::Artificial grammar learning (AGL) is a form of nondeclarative memory that involves the nonconscious acquisition of abstract rules. While data from amnesic patients indicate that AGL does not depend on the medial temporal lobe, the neural basis of this type of memory is unknown and was therefore examined using event-re...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1006/nimg.2002.1291

    authors: Skosnik PD,Mirza F,Gitelman DR,Parrish TB,Mesulam MM,Reber PJ

    更新日期:2002-11-01 00:00:00

  • Integration of visual and non-visual self-motion cues during voluntary head movements in the human brain.

    abstract::Our phenomenological experience of the stable world is maintained by continuous integration of visual self-motion with extra-retinal signals. However, due to conventional constraints of fMRI acquisition in humans, neural responses to visuo-vestibular integration have only been studied using artificial stimuli, in the ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2018.02.006

    authors: Schindler A,Bartels A

    更新日期:2018-05-15 00:00:00

  • Spatial attention increases high-frequency gamma synchronisation in human medial visual cortex.

    abstract::Visual information processing involves the integration of stimulus and goal-driven information, requiring neuronal communication. Gamma synchronisation is linked to neuronal communication, and is known to be modulated in visual cortex both by stimulus properties and voluntarily-directed attention. Stimulus-driven modu...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2013.04.108

    authors: Koelewijn L,Rich AN,Muthukumaraswamy SD,Singh KD

    更新日期:2013-10-01 00:00:00

  • The role of left inferior frontal cortex during audiovisual speech perception in infants.

    abstract::In the first year of life, infants' speech perception attunes to their native language. While the behavioral changes associated with native language attunement are fairly well mapped, the underlying mechanisms and neural processes are still only poorly understood. Using fNIRS and eye tracking, the current study invest...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2016.02.061

    authors: Altvater-Mackensen N,Grossmann T

    更新日期:2016-06-01 00:00:00

  • It takes two to tango: Suppression of task-irrelevant features requires (spatial) competition.

    abstract::In a recent electrophysiological study, we reported on global facilitation but local suppression of color stimuli in feature-based attention in human early visual cortex. Subjects attended to one of two centrally located superimposed red/blue random dot kinematograms (RDKs). Task-irrelevant single RDKs in the same col...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2018.05.073

    authors: Müller MM,Gundlach C,Forschack N,Brummerloh B

    更新日期:2018-09-01 00:00:00

  • Small-world directed networks in the human brain: multivariate Granger causality analysis of resting-state fMRI.

    abstract::Small-world organization is known to be a robust and consistent network architecture, and is a hallmark of the structurally and functionally connected human brain. However, it remains unknown if the same organization is present in directed influence brain networks whose connectivity is inferred by the transfer of info...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2010.11.007

    authors: Liao W,Ding J,Marinazzo D,Xu Q,Wang Z,Yuan C,Zhang Z,Lu G,Chen H

    更新日期:2011-02-14 00:00:00

  • Expertise for conspecific face individuation in the human brain.

    abstract::Humans exhibit a marked specialization to process the most experienced facial morphologies. In particular, nonhuman primate faces are poorly discriminated compared to human faces in behavioral tasks. So far however, a clear and consistent marker that quantifies our expertise in human over monkey face discrimination di...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2019.116218

    authors: Damon F,Leleu A,Rekow D,Poncet F,Baudouin JY

    更新日期:2020-01-01 00:00:00

  • Fast structural brain imaging using an MDEFT sequence with a FLASH-EPI hybrid readout.

    abstract::A sequence for the fast acquisition of T1 weighted structural brain images with whole brain coverage and isotropic resolution of 1mm is presented. It is based on MDEFT with a FLASH-EPI hybrid readout. Several techniques for artefact suppression are implemented, like echo time shifting, asymmetric k-space sampling, and...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2006.08.005

    authors: Deichmann R

    更新日期:2006-12-01 00:00:00

  • Dispersion of functional gradients across the adult lifespan.

    abstract::Ageing is commonly associated with changes to segregation and integration of functional brain networks, but, in isolation, current network-based approaches struggle to elucidate changes across the many axes of functional organisation. However, the advent of gradient mapping techniques in neuroimaging provides a new me...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2020.117299

    authors: Bethlehem RAI,Paquola C,Seidlitz J,Ronan L,Bernhardt B,Consortium CC,Tsvetanov KA

    更新日期:2020-11-15 00:00:00

  • Multivariate combination of magnetization transfer, T2* and B0 orientation to study the myelo-architecture of the in vivo human cortex.

    abstract::Recently, T2* imaging at 7Tesla (T) MRI was shown to reveal microstructural features of the cortical myeloarchitecture thanks to an increase in contrast-to-noise ratio. However, several confounds hamper the specificity of T2* measures (iron content, blood vessels, tissues orientation). Another metric, magnetization tr...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2015.06.033

    authors: Mangeat G,Govindarajan ST,Mainero C,Cohen-Adad J

    更新日期:2015-10-01 00:00:00

  • Differential impact of reward and punishment on functional connectivity after skill learning.

    abstract::Reward and punishment shape behavior, but the mechanisms underlying their effect on skill learning are not well understood. Here, we tested whether the functional connectivity of premotor cortex (PMC), a region known to be critical for learning of sequencing skills, is altered after training when reward or punishment ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2019.01.009

    authors: Steel A,Silson EH,Stagg CJ,Baker CI

    更新日期:2019-04-01 00:00:00

  • Cross-adaptation combined with TMS reveals a functional overlap between vision and imagery in the early visual cortex.

    abstract::The extent to which the generation of mental images draws on the neuronal representations involved in visual perception has been the subject of much debate. To investigate this overlap, we assessed whether adaptation to visual stimuli affects the ability to generate visual mental images; such cross-adaptation would in...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2011.10.022

    authors: Cattaneo Z,Bona S,Silvanto J

    更新日期:2012-02-01 00:00:00

  • Reward motivation and neurostimulation interact to improve working memory performance in healthy older adults: A simultaneous tDCS-fNIRS study.

    abstract::Several studies have evaluated the effect of anodal transcranial direct current stimulation (tDCS) over the prefrontal cortex (PFC) for the enhancement of working memory (WM) performance in healthy older adults. However, the mixed results obtained so far suggest the need for concurrent brain imaging, in order to more ...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2019.116062

    authors: Di Rosa E,Brigadoi S,Cutini S,Tarantino V,Dell'Acqua R,Mapelli D,Braver TS,Vallesi A

    更新日期:2019-11-15 00:00:00

  • Origins of the BOLD post-stimulus undershoot.

    abstract::The interpretation of the blood-oxygenation level-dependent (BOLD) post-stimulus undershoot has been a topic of considerable interest, as the mechanisms behind this prominent BOLD transient may provide valuable clues on the neurovascular response process and energy supply routes of the brain. Biomechanical theories ex...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2009.03.015

    authors: Chen JJ,Pike GB

    更新日期:2009-07-01 00:00:00

  • A mesostate-space model for EEG and MEG.

    abstract::We present a multi-scale generative model for EEG, that entails a minimum number of assumptions about evoked brain responses, namely: (1) bioelectric activity is generated by a set of distributed sources, (2) the dynamics of these sources can be modelled as random fluctuations about a small number of mesostates, (3) m...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2007.06.034

    authors: Daunizeau J,Friston KJ

    更新日期:2007-10-15 00:00:00

  • Neural correlates of individual ratings of emotional salience: a trial-related fMRI study.

    abstract::Accurate appraisal of meaningful environmental signals involves the interpretation of salient information for their intrinsic emotional value and personal relevance. We examined the neural basis for these components of endogenous salience during such appraisals using trial-related functional magnetic resonance imaging...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2003.09.072

    authors: Phan KL,Taylor SF,Welsh RC,Ho SH,Britton JC,Liberzon I

    更新日期:2004-02-01 00:00:00

  • Automatic prediction error responses to hands with unexpected laterality: an electrophysiological study.

    abstract::Little is known about how the human brain keeps track of body parts in the visual field. Here we show that unattended images of right/left hands elicit a mismatch response when they violate a regularity established by repeated visual presentations of the other hand. In a visual oddball experiment we found mismatch res...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2012.06.068

    authors: Stefanics G,Czigler I

    更新日期:2012-10-15 00:00:00

  • Measuring temporal dynamics of functional networks using phase spectrum of fMRI data.

    abstract::We present a novel method to measure relative latencies between functionally connected regions using phase-delay of functional magnetic resonance imaging data. Derived from the phase component of coherency, this quantity estimates the linear delay between two time-series. In conjunction with coherence, derived from th...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2005.05.043

    authors: Sun FT,Miller LM,D'Esposito M

    更新日期:2005-10-15 00:00:00

  • Can magnetoencephalography track the afferent information flow along white matter thalamo-cortical fibers?

    abstract::White matter thalamo-cortical fibers allow the communication of distant brain regions by carrying neuronal signals. Mapping non-invasively the information flow within white matter fibers is regarded so far as impossible. We investigated here whether information flow propagating along thalamo-cortical fibers can be det...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2012.01.054

    authors: Papadelis C,Leonardelli E,Staudt M,Braun C

    更新日期:2012-04-02 00:00:00

  • Real-time motion analytics during brain MRI improve data quality and reduce costs.

    abstract::Head motion systematically distorts clinical and research MRI data. Motion artifacts have biased findings from many structural and functional brain MRI studies. An effective way to remove motion artifacts is to exclude MRI data frames affected by head motion. However, such post-hoc frame censoring can lead to data los...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2017.08.025

    authors: Dosenbach NUF,Koller JM,Earl EA,Miranda-Dominguez O,Klein RL,Van AN,Snyder AZ,Nagel BJ,Nigg JT,Nguyen AL,Wesevich V,Greene DJ,Fair DA

    更新日期:2017-11-01 00:00:00

  • Human reversal learning under conditions of certain versus uncertain outcomes.

    abstract::Reversal learning tasks assess behavioral flexibility by requiring subjects to switch from one learned response choice to a different response choice when task contingencies change. This requires both the processing of negative feedback once a learned response is no longer reinforced, and the capacity for flexible res...

    journal_title:NeuroImage

    pub_type: 杂志文章

    doi:10.1016/j.neuroimage.2011.01.068

    authors: D'Cruz AM,Ragozzino ME,Mosconi MW,Pavuluri MN,Sweeney JA

    更新日期:2011-05-01 00:00:00