A forward chemical screen using zebrafish embryos with novel 2-substituted 2H-chromene derivatives.

Abstract:

:We synthesized 2-substituted 2H-chromene derivatives from salicylaldehyde using potassium vinylic borates in the presence of secondary amines. Our goal was to generate novel compounds that might modulate transforming growth factor-beta signaling, based on limited rational design. Potassium vinyl trifluoroborates react with salicylaldehydes at 80 degrees C in the presence of a secondary amine and produce 2-substituted 2H-chromene derivatives with a 70-90% yield. A small library of these compounds, predicted to potentially interact with transforming growth factor-beta receptors, was screened for bioactivity in living zebrafish embryos. We found that the related compounds differentially affect development, and demonstrate one compound that produces severe body axis alterations in early embryogenesis and at lower doses affects specifically cardiovascular development. This compound modulates specifically a Smad-independent transforming growth factor-beta-regulated mitogen-activated protein kinase pathway, namely p-SAPK/JNK. These compounds, as suggested by our biological assays, may prove useful to manipulate developmental programs and develop therapeutic tools.

journal_name

Chem Biol Drug Des

authors

Torregroza I,Evans T,Das BC

doi

10.1111/j.1747-0285.2009.00782.x

subject

Has Abstract

pub_date

2009-03-01 00:00:00

pages

339-45

issue

3

eissn

1747-0277

issn

1747-0285

pii

JPP782

journal_volume

73

pub_type

杂志文章
  • Transport characteristics of endomorphin-2 analogues in brain capillary endothelial cells.

    abstract::Because of their poor metabolic stability and limited blood-brain barrier permeability, endomorphins have a low analgesic efficacy when administered systemically. Therefore, it is of great importance to design analogues with improved peptidase resistance and better delivery to the central nervous system. Recently, nov...

    journal_title:Chemical biology & drug design

    pub_type: 杂志文章

    doi:10.1111/j.1747-0285.2011.01306.x

    authors: Mallareddy JR,Tóth G,Fazakas C,Molnár J,Nagyőszi P,Lipkowski AW,Krizbai IA,Wilhelm I

    更新日期:2012-04-01 00:00:00

  • Conjugation of Uridine with Oleanolic Acid Derivatives as Potential Antitumor Agents.

    abstract::According to fused two bioactive moieties together by bonds covalently and available as a new single hybrid entity known as pharmacophore hybridization, a total of 10 targeted uridine-oleanolic acid hybrids were synthesized. Most of these hybrids showed excellent proliferation inhibition against tested Hep-G2, A549, B...

    journal_title:Chemical biology & drug design

    pub_type: 杂志文章

    doi:10.1111/cbdd.12758

    authors: Cheng KG,Su CH,Huang JY,Liu J,Zheng YT,Chen ZF

    更新日期:2016-09-01 00:00:00

  • On the origins of enzyme inhibitor selectivity and promiscuity: a case study of protein kinase binding to staurosporine.

    abstract::Relationships between ligand binding and the shapes of the binding sites in families of homologous enzymes are investigated by comparing matrices of distances between key binding site atoms. Multiple linear regression is used to help identify key distances that influence ligand binding affinity. In order to illustrate...

    journal_title:Chemical biology & drug design

    pub_type: 杂志文章

    doi:10.1111/j.1747-0285.2009.00832.x

    authors: Tanramluk D,Schreyer A,Pitt WR,Blundell TL

    更新日期:2009-07-01 00:00:00

  • Molecular dynamics insights on the role β-augmentation of the peptide N-terminus with binding site β-hairpin of proprotein convertase subtilisin/kexin 9.

    abstract::PCSK9, a member of the proprotein convertase family, is a key negative regulator of hepatic low-density lipoprotein receptor (LDLR) concentrations in the blood plasma and is associated with the risk of coronary artery disease (CAD). Peptide inhibitors designed to block PCSK9-LDLR interactions could reduce the risk of ...

    journal_title:Chemical biology & drug design

    pub_type: 杂志文章

    doi:10.1111/cbdd.13612

    authors: Pasam B,Medicherla KM,Rathore RS,Upadhyayula RS

    更新日期:2019-12-01 00:00:00

  • Mapping ligand-receptor interfaces: approaching the resolution limit of benzophenone-based photoaffinity scanning.

    abstract::Photoaffinity crosslinking has yielded important insights in the study of G protein-coupled receptors and the mode of ligand binding. The most widely used photolabile moiety is p-benzoylphenylalanine largely because of its reportedly high site specificity, reduced reactivity to water and light, photokinetics, and ease...

    journal_title:Chemical biology & drug design

    pub_type: 信件

    doi:10.1111/j.1747-0285.2008.00646.x

    authors: Wittelsberger A,Mierke DF,Rosenblatt M

    更新日期:2008-04-01 00:00:00

  • Lycorine derivatives against Trichomonas vaginalis.

    abstract::Six lycorine derivatives were prepared, characterized, and evaluated for their in vitro anti-Trichomonas vaginalis activity. Compounds bearing an acetyl (2), lauroyl (3), benzoyl (4 and 5), and p-nitrobenzoyl (6 and 7) groups were synthesized. The best activity was achieved with lycorine esterified at C-2 position wit...

    journal_title:Chemical biology & drug design

    pub_type: 信件

    doi:10.1111/j.1747-0285.2012.01333.x

    authors: Giordani RB,Junior CO,de Andrade JP,Bastida J,Zuanazzi JA,Tasca T,de Almeida MV

    更新日期:2012-07-01 00:00:00

  • RelACCS-FP: a structural minimalist approach to fingerprint design.

    abstract::The design and evaluation of structural key-type fingerprints is reported that consist of only 10-30 substructures isolated from randomly generated fragment populations of different classes of active compounds. To identify minimal sets of fragments that carry substantial compound class-specific information, fragment f...

    journal_title:Chemical biology & drug design

    pub_type: 杂志文章

    doi:10.1111/j.1747-0285.2008.00723.x

    authors: Hu Y,Lounkine E,Batista J,Bajorath J

    更新日期:2008-11-01 00:00:00

  • AVCpred: an integrated web server for prediction and design of antiviral compounds.

    abstract::Viral infections constantly jeopardize the global public health due to lack of effective antiviral therapeutics. Therefore, there is an imperative need to speed up the drug discovery process to identify novel and efficient drug candidates. In this study, we have developed quantitative structure-activity relationship (...

    journal_title:Chemical biology & drug design

    pub_type: 杂志文章

    doi:10.1111/cbdd.12834

    authors: Qureshi A,Kaur G,Kumar M

    更新日期:2017-01-01 00:00:00

  • Homology modeling, docking studies and molecular dynamic simulations using graphical processing unit architecture to probe the type-11 phosphodiesterase catalytic site: a computational approach for the rational design of selective inhibitors.

    abstract::Phosphodiesterase 11 (PDE11) is the latest isoform of the PDEs family to be identified, acting on both cyclic adenosine monophosphate and cyclic guanosine monophosphate. The initial reports of PDE11 found evidence for PDE11 expression in skeletal muscle, prostate, testis, and salivary glands; however, the tissue distr...

    journal_title:Chemical biology & drug design

    pub_type: 杂志文章

    doi:10.1111/cbdd.12193

    authors: Cichero E,D'Ursi P,Moscatelli M,Bruno O,Orro A,Rotolo C,Milanesi L,Fossa P

    更新日期:2013-12-01 00:00:00

  • Membrane permeability of acylated cystatin depends on the fatty acyl chain length.

    abstract::Hydrophobization of proteins, such as chemical acylation, has been recognized as an efficient method for improving their membrane permeability. In this research, chicken cystatin, a model protein inhibitor of cysteine proteinases, was acylated with fatty acyl residues of 6-18 carbon atoms. The chemical modification wa...

    journal_title:Chemical biology & drug design

    pub_type: 杂志文章

    doi:10.1111/j.1747-0285.2008.00693.x

    authors: Kocevar N,Obermajer N,Kreft S

    更新日期:2008-09-01 00:00:00

  • Anticancer activity of selected phenolic compounds: QSAR studies using ridge regression and neural networks.

    abstract::Phenol and its congeners are known to induce caspase-mediated apoptosis activity and cytotoxicity on various cancer cell lines. Apoptosis, scavenging of radicals, antioxidant, and pro-oxidant characteristics are primarily responsible for the antitumor activities of phenolic compounds. Quantitative structure-activity r...

    journal_title:Chemical biology & drug design

    pub_type: 杂志文章

    doi:10.1111/j.1747-0285.2007.00575.x

    authors: Nandi S,Vracko M,Bagchi MC

    更新日期:2007-11-01 00:00:00

  • Ensemble-Based Virtual Screening and Experimental Validation of Inhibitors Targeting a Novel Site of Human DNMT1.

    abstract::Human DNA methyltransferase1 (hDNMT1) is responsible for preserving DNA methylation patterns that play important regulatory roles in differentiation and development. Misregulation of DNA methylation has thus been linked to many syndromes, life style diseases, and cancers. Developing specific inhibitors of hDNMT1 is an...

    journal_title:Chemical biology & drug design

    pub_type: 社论

    doi:10.1111/cbdd.12741

    authors: Joshi M,Rajpathak SN,Narwade SC,Deobagkar D

    更新日期:2016-07-01 00:00:00

  • High throughput receptor-based virtual screening under ZINC database, synthesis, and biological evaluation of ketol-acid reductoisomerase inhibitors.

    abstract::Ketol-acid reductoisomerase (KARI; EC 1.1.1.86) catalyzes the second common step in branched-chain amino acid biosynthesis. This enzyme is an important target for drug design. Based on the crystal structure of ketol-acid reductoisomerase/N-hydroxy-N-isopropyloxamate (IpOHA) complex, we have carried out high throughput...

    journal_title:Chemical biology & drug design

    pub_type: 杂志文章

    doi:10.1111/j.1747-0285.2009.00924.x

    authors: Liu XH,Chen PQ,Wang BL,Dong WL,Li YH,Xie XQ,Li ZM

    更新日期:2010-02-01 00:00:00

  • Highly selective cyclic peptide ligands for NeutrAvidin and avidin identified by phage display.

    abstract::Screening combinatorial libraries of conformationally constrained peptides against macromolecular targets is utilized in identifying novel drug leads and in developing new reagents for chemical biology. In methods such as phage-display selections, biotinylated macromolecular targets are often immobilized on avidin- an...

    journal_title:Chemical biology & drug design

    pub_type: 杂志文章

    doi:10.1111/j.1747-0285.2006.00401.x

    authors: Meyer SC,Gaj T,Ghosh I

    更新日期:2006-07-01 00:00:00

  • Design, synthesis and activity against Staphylococcus epidermidis of 5-chloro-2- or 5-chloro-4-methyl-9H-xanthen-9-one and some of its derivatives.

    abstract::Ten new xanthone derivatives have been designed and synthesized for their potential antibacterial activity. All compounds have been screened against Staphylococcus epidermidis strains ATCC 12228 and clinical K/12/8915. The highest antibacterial activity was observed for compound 3: 5-chloro-2-((4-(2-hydroxyethyl)piper...

    journal_title:Chemical biology & drug design

    pub_type: 杂志文章

    doi:10.1111/cbdd.13803

    authors: Mazur G,Skiba-Kurek I,Karczewska E,Pańczyk-Straszak K,Jaworska J,Waszkielewicz AM

    更新日期:2020-10-08 00:00:00

  • Effects of drug hydrophobicity on liposomal stability.

    abstract::A major obstacle in drug delivery is the inability to effectively deliver drugs to their intended biological target without deleterious side-effects. Delivery vehicles such as liposomes can minimize toxic side-effects by shielding the drug from reaction with unintended targets while in systemic circulation. Liposomes ...

    journal_title:Chemical biology & drug design

    pub_type: 杂志文章

    doi:10.1111/j.1747-0285.2007.00610.x

    authors: Khan DR,Rezler EM,Lauer-Fields J,Fields GB

    更新日期:2008-01-01 00:00:00

  • Synthesis of 2-(4-substitutedbenzyl-[1,4]diazepan-1-yl)-n-(1-methyl-4,5-dihydro-[1,2,4]triazolo[4,3-a]quinolin-7-yl)acetamides as inotropic agents.

    abstract::In an attempt to search for more potent positive inotropic agents, a series of N-(4,5-dihydro-1-methyl-[1,2,4]triazolo[4,3-a]quinolin-7-yl)-2-(substitutedbenzyl-[1,4]diazepan-1-yl)acetamides were synthesized and evaluated for positive inotropic activity by measuring left atrium stroke volume in isolated rabbit heart p...

    journal_title:Chemical biology & drug design

    pub_type: 信件

    doi:10.1111/j.1747-0285.2010.01057.x

    authors: Ye BJ,Liu XK,Jiang SM,Cui X,Piao HR

    更新日期:2011-01-01 00:00:00

  • On application of constitutional descriptors for merging of quinoxaline data sets using linear statistical methods.

    abstract::The present paper is an attempt for unifying two different quinoxaline data sets with a wide range of substituents in 2, 3, 7, and 8 positions having excellent antitubercular activities with a view to developing robust and reliable structure-activity relationships. The merging has been performed for these two sets of ...

    journal_title:Chemical biology & drug design

    pub_type: 杂志文章

    doi:10.1111/j.1747-0285.2008.00686.x

    authors: Ghosh P,Vracko M,Chattopadhyay AK,Bagchi MC

    更新日期:2008-08-01 00:00:00

  • Cholesteryl-functionalized ADNF-9 peptide: enhanced membrane transport through mouse neuroblastoma Neuro-2a cells.

    abstract::A cholesteryl-functionalized derivative of activity dependent neurotrophic factor-9 peptide (a nine amino acid core peptide of activity-dependent neurotrophic factor, acting against Alzheimer's disease) was synthesized aiming at the improvement of its bioavailability. Therefore, its uptake was comparatively investigat...

    journal_title:Chemical biology & drug design

    pub_type: 信件

    doi:10.1111/j.1747-0285.2012.01381.x

    authors: Katsari E,Zikos C,Tziveleka LA,Paravatou-Petsotas M,Paleos CM

    更新日期:2012-07-01 00:00:00

  • Genome-wide DNA methylation and transcriptome and proteome changes in Mycobacterium tuberculosis with para-aminosalicylic acid resistance.

    abstract::Previous studies have reported that genome-wide DNA methylation and differentially expressed genes and proteins are closely associated with drug resistance in Mycobacterium tuberculosis (M. tuberculosis). However, no reports have explored such associations in para-aminosalicylic acid (PAS)-resistant M. tuberculosis H3...

    journal_title:Chemical biology & drug design

    pub_type: 杂志文章

    doi:10.1111/cbdd.13625

    authors: Li HC,Chen T,Yu L,Guo HX,Chen L,Chen YH,Chen M,Zhao J,Yan HM,Zhou L,Wang W

    更新日期:2020-01-01 00:00:00

  • The mimic of type II aldolases chemistry: asymmetric synthesis of beta-hydroxy ketones by direct aldol reaction.

    abstract::An efficient direct aldol reaction has been developed for the synthesis of chiral beta-hydroxy ketone using a combination of C(1)-symmetric chiral prolinamides based on o-phenylenediamine and zinc triflate as catalyst. The reaction was convenient to carry out in aqueous media with up to 98% chemical yields and up to 9...

    journal_title:Chemical biology & drug design

    pub_type: 杂志文章

    doi:10.1111/j.1747-0285.2010.00998.x

    authors: Lu Z,Mei H,Han J,Pan Y

    更新日期:2010-08-01 00:00:00

  • Synthesis and antifungal activity of 1-[(2-benzyloxy)phenyl]-2-(azol-1-yl)ethanone derivatives: exploring the scaffold flexibility.

    abstract::Based on the N-(phenethyl)azole backbone of azole antifungals, we designed 1-[(2-benzyloxy)phenyl]-2-(azol-1-yl)ethanone derivatives 2 and 3, containing benzyloxyphenyl scaffold of croconazole. Also these compounds can be considered as flexible analogs, resulted from C2-C3 disconnection of 3'-chloro-3-imidazolylflavan...

    journal_title:Chemical biology & drug design

    pub_type: 杂志文章

    doi:10.1111/j.1747-0285.2011.01243.x

    authors: Emami S,Kazemi-Najafabadi M,Pashangzadeh S,Foroumadi A,Faramarzi MA,Samadi N,Falahati M,Fateh R,Ashrafi-Khozani M

    更新日期:2011-12-01 00:00:00

  • Mapping the druggable allosteric space of G-protein coupled receptors: a fragment-based molecular dynamics approach.

    abstract::To address the problem of specificity in G-protein coupled receptor (GPCR) drug discovery, there has been tremendous recent interest in allosteric drugs that bind at sites topographically distinct from the orthosteric site. Unfortunately, structure-based drug design of allosteric GPCR ligands has been frustrated by th...

    journal_title:Chemical biology & drug design

    pub_type: 杂志文章

    doi:10.1111/j.1747-0285.2010.01012.x

    authors: Ivetac A,McCammon JA

    更新日期:2010-09-01 00:00:00

  • Study of chemical ligation via 17-, 18- and 19-membered cyclic transition states.

    abstract::Unprotected S-acylated cysteine isopeptides containing α-, β- or γ-amino acid units have been synthesized, and their conversion to native hexapeptides by S- to the N-terminus ligations involving 17-, 18- and 19-membered cyclic transition states have been demonstrated both experimentally and computationally to be more ...

    journal_title:Chemical biology & drug design

    pub_type: 杂志文章

    doi:10.1111/cbdd.12053

    authors: Panda SS,El-Nachef C,Bajaj K,Al-Youbi AO,Oliferenko A,Katritzky AR

    更新日期:2012-12-01 00:00:00

  • 2-(2,6-Dihalo-phenyl)-3-heteroaryl-2-ylmethyl-1, 3-thiazolidin-4-ones: anti-HIV agents.

    abstract::A diversity of novel 2-aryl-3-heteroaryl-2-ylmethyl-1,3-thiazolidin-4-ones were designed and synthesized by reacting heteroaryl-2-ylmethyl amine with various 2,6-dihalosubstituted benzaldehydes and mercaptoacetic acid. The title compounds were evaluated for human immunodeficiency virus type-1 (HIV-1) reverse transcrip...

    journal_title:Chemical biology & drug design

    pub_type: 杂志文章

    doi:10.1111/j.1747-0285.2008.00683.x

    authors: Rawal RK,Tripathi R,Kulkarni S,Paranjape R,Katti SB,Pannecouque C,De Clercq E

    更新日期:2008-08-01 00:00:00

  • Triterpenes from Poria cocos are revealed as potential retinoid X receptor selective agonists based on cell and in silico evidence.

    abstract::Poria cocos is an edible and medicinal fungus that is widely used in Traditional Chinese Medicines as well as in modern applications. Retinoid X receptor (RXR) occupies a central place in nuclear receptor signaling, and a pharmacological RXR-dependent pathway is involved in myeloid cell function. Here, structural info...

    journal_title:Chemical biology & drug design

    pub_type: 杂志文章

    doi:10.1111/cbdd.13610

    authors: Xu H,Wang Y,Zhao J,Jurutka PW,Huang D,Liu L,Zhang L,Wang S,Chen Y,Cheng S

    更新日期:2020-05-01 00:00:00

  • Design, Synthesis and in vivo Evaluation of Novel C-Aryl Glucosides as Potent Sodium-Dependent Glucose Cotransporters Inhibitors for the Treatment of Diabetes.

    abstract::A series of novel C-aryl glucosides with substituents at the 3'-position or cyclization at 3', 4'-positions of the distal aryl ring were designed and synthesized, which might decrease the oxidative metabolism of dapagliflozin. Preliminary evaluation for hypoglycemic effect and the risk of hypoglycemia were carried out...

    journal_title:Chemical biology & drug design

    pub_type: 杂志文章

    doi:10.1111/cbdd.12547

    authors: Li Z,Wang X,Xu X,Qiu Q,Jiao L,Huang W,Qian H

    更新日期:2015-10-01 00:00:00

  • Fullerene isoniazid conjugate--a tuberculostat with increased lipophilicity: synthesis and evaluation of antimycobacterial activity.

    abstract::A fullerene-isoniazid conjugate has been synthesized by 1, 3 dipolar cycloaddition reaction of fullerene (C(60)) with isonicotinic acid (4-formyl-benzylidene) hydrazide and N-methylglycine. The identity and purity of the compound was confirmed by elemental analysis, (1)H NMR, (13)C NMR and MALDI-TOF mass spectral anal...

    journal_title:Chemical biology & drug design

    pub_type: 信件

    doi:10.1111/j.1747-0285.2009.00804.x

    authors: Kumar A,Patel G,Menon SK

    更新日期:2009-05-01 00:00:00

  • Design, synthesis, and biological evaluation of chrysin derivatives as potential FabH inhibitors.

    abstract::New series of chrysin derivatives (4a-4t) were designed and synthesized by introducing different substituted piperazines at C-7 position. Their inhibitory effects on FabH were evaluated using two Gram-negative bacterial strains, Escherichia coli and Pseudomonas aeruginosa, and two Gram-positive bacterial strains, Baci...

    journal_title:Chemical biology & drug design

    pub_type: 杂志文章

    doi:10.1111/cbdd.12839

    authors: Li HX,Wang ZC,Qian YM,Yan XQ,Lu YD,Zhu HL

    更新日期:2017-01-01 00:00:00

  • The design, synthesis and potential utility of fluorescence probes that target DFG-out conformation of p38alpha for high throughput screening binding assay.

    abstract::The design, synthesis and utility of fluorescence probes that bind to the DFG-out conformation of p38alpha kinase are described. Probes that demonstrate good affinity for p38alpha, have been identified and one of the probes, PF-04438255, has been successfully used in an high throughput screening (HTS) assay to identif...

    journal_title:Chemical biology & drug design

    pub_type: 杂志文章

    doi:10.1111/j.1747-0285.2009.00884.x

    authors: Tecle H,Feru F,Liu H,Kuhn C,Rennie G,Morris M,Shao J,Cheng AC,Gikunju D,Miret J,Coli R,Xi SH,Clugston SL,Low S,Kazmirski S,Ding YH,Cao Q,Johnson TL,Deshmukh GD,DiNitto JP,Wu JC,English JM

    更新日期:2009-12-01 00:00:00