Insights on the evolution of trehalose biosynthesis.

Abstract:

BACKGROUND:The compatible solute trehalose is a non-reducing disaccharide, which accumulates upon heat, cold or osmotic stress. It was commonly accepted that trehalose is only present in extremophiles or cryptobiotic organisms. However, in recent years it has been shown that although higher plants do not accumulate trehalose at significant levels they have actively transcribed genes encoding the corresponding biosynthetic enzymes. RESULTS:In this study we show that trehalose biosynthesis ability is present in eubacteria, archaea, plants, fungi and animals. In bacteria there are five different biosynthetic routes, whereas in fungi, plants and animals there is only one. We present phylogenetic analyses of the trehalose-6-phosphate synthase (TPS) and trehalose-phosphatase (TPP) domains and show that there is a close evolutionary relationship between these domains in proteins from diverse organisms. In bacteria TPS and TPP genes are clustered, whereas in eukaryotes these domains are fused in a single protein. CONCLUSION:We have demonstrated that trehalose biosynthesis pathways are widely distributed in nature. Interestingly, several eubacterial species have multiple pathways, while eukaryotes have only the TPS/TPP pathway. Vertebrates lack trehalose biosynthetic capacity but can catabolise it. TPS and TPP domains have evolved mainly in parallel and it is likely that they have experienced several instances of gene duplication and lateral gene transfer.

journal_name

BMC Evol Biol

journal_title

BMC evolutionary biology

authors

Avonce N,Mendoza-Vargas A,Morett E,Iturriaga G

doi

10.1186/1471-2148-6-109

subject

Has Abstract

pub_date

2006-12-19 00:00:00

pages

109

issn

1471-2148

pii

1471-2148-6-109

journal_volume

6

pub_type

杂志文章
  • Molecular phylogeny of the subfamily Stevardiinae Gill, 1858 (Characiformes: Characidae): classification and the evolution of reproductive traits.

    abstract:BACKGROUND:The subfamily Stevardiinae is a diverse and widely distributed clade of freshwater fishes from South and Central America, commonly known as "tetras" (Characidae). The group was named "clade A" when first proposed as a monophyletic unit of Characidae and later designated as a subfamily. Stevardiinae includes ...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-015-0403-4

    authors: Thomaz AT,Arcila D,Ortí G,Malabarba LR

    更新日期:2015-07-21 00:00:00

  • Evolutionary insights about bacterial GlxRS from whole genome analyses: is GluRS2 a chimera?

    abstract:BACKGROUND:Evolutionary histories of glutamyl-tRNA synthetase (GluRS) and glutaminyl-tRNA synthetase (GlnRS) in bacteria are convoluted. After the divergence of eubacteria and eukarya, bacterial GluRS glutamylated both tRNAGln and tRNAGlu until GlnRS appeared by horizontal gene transfer (HGT) from eukaryotes or a dupli...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-14-26

    authors: Dasgupta S,Basu G

    更新日期:2014-02-12 00:00:00

  • The phylogeny of brown lacewings (Neuroptera: Hemerobiidae) reveals multiple reductions in wing venation.

    abstract:BACKGROUND:The last time the phylogenetic relationships among members of the family Hemerobiidae were studied quantitatively was over 12 years ago and based exclusively on morphology. Our study builds upon this morphological evidence by adding sequence data from three gene loci to provide a total evidence phylogeny of ...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-016-0746-5

    authors: Garzón-Orduña IJ,Menchaca-Armenta I,Contreras-Ramos A,Liu X,Winterton SL

    更新日期:2016-09-20 00:00:00

  • Interspecific and interploidal gene flow in Central European Arabidopsis (Brassicaceae).

    abstract:BACKGROUND:Effects of polyploidisation on gene flow between natural populations are little known. Central European diploid and tetraploid populations of Arabidopsis arenosa and A. lyrata are here used to study interspecific and interploidal gene flow, using a combination of nuclear and plastid markers. RESULTS:Ploidal...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-11-346

    authors: Jørgensen MH,Ehrich D,Schmickl R,Koch MA,Brysting AK

    更新日期:2011-11-29 00:00:00

  • Mating success and potential male-worker conflict in a male-dimorphic ant.

    abstract:BACKGROUND:Males of many species adjust their reproductive tactics with regard to their condition and status. For example, large males may develop weapons and fight for access to females, whereas small or undernourished males do not express costly weapons or ornaments and sneak copulations. Different condition-dependen...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-7-114

    authors: Schrempf A,Darrouzet E,Heinze J

    更新日期:2007-07-10 00:00:00

  • Molecular phylogeny and taxonomic revision of the sportive lemurs (Lepilemur, Primates).

    abstract:BACKGROUND:The number of species within the Malagasy genus Lepilemur and their phylogenetic relationships is disputed and controversial. In order to establish their evolutionary relationships, a comparative cytogenetic and molecular study was performed. We sequenced the complete mitochondrial cytochrome b gene (1140 bp...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-6-17

    authors: Andriaholinirina N,Fausser JL,Roos C,Zinner D,Thalmann U,Rabarivola C,Ravoarimanana I,Ganzhorn JU,Meier B,Hilgartner R,Walter L,Zaramody A,Langer C,Hahn T,Zimmermann E,Radespiel U,Craul M,Tomiuk J,Tattersall I,Rumpl

    更新日期:2006-02-23 00:00:00

  • Tracing early stages of species differentiation: ecological, morphological and genetic divergence of Galápagos sea lion populations.

    abstract:BACKGROUND:Oceans are high gene flow environments that are traditionally believed to hamper the build-up of genetic divergence. Despite this, divergence appears to occur occasionally at surprisingly small scales. The Galápagos archipelago provides an ideal opportunity to examine the evolutionary processes of local dive...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-8-150

    authors: Wolf JB,Harrod C,Brunner S,Salazar S,Trillmich F,Tautz D

    更新日期:2008-05-16 00:00:00

  • Phylogeny and androgenesis in the invasive Corbicula clams (Bivalvia, Corbiculidae) in Western Europe.

    abstract:BACKGROUND:The genus Corbicula is one of the most invasive groups of molluscs. It includes both sexual and androgenetic lineages. The present study re-assessed the different morphotypes and haplotypes of West European Corbicula in order to clarify their taxonomic identification and phylogenetic relationships with Ameri...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-11-147

    authors: Pigneur LM,Marescaux J,Roland K,Etoundi E,Descy JP,Van Doninck K

    更新日期:2011-05-27 00:00:00

  • Changes in ontogenetic patterns facilitate diversification in skull shape of Australian agamid lizards.

    abstract:BACKGROUND:Morphological diversity among closely related animals can be the result of differing growth patterns. The Australian radiation of agamid lizards (Amphibolurinae) exhibits great ecological and morphological diversity, which they have achieved on a continent-wide scale, in a relatively short period of time (30...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-018-1335-6

    authors: Gray JA,Sherratt E,Hutchinson MN,Jones MEH

    更新日期:2019-01-08 00:00:00

  • Similar rates of protein adaptation in Drosophila miranda and D. melanogaster, two species with different current effective population sizes.

    abstract:BACKGROUND:Adaptive protein evolution is common in several Drosophila species investigated. Some studies point to very weak selection operating on amino-acid mutations, with average selection intensities on the order of Nes approximately in D. melanogaster and D. simulans. Species with lower effective population sizes ...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-8-334

    authors: Bachtrog D

    更新日期:2008-12-18 00:00:00

  • The mitochondrial phylogeny of an ancient lineage of ray-finned fishes (Polypteridae) with implications for the evolution of body elongation, pelvic fin loss, and craniofacial morphology in Osteichthyes.

    abstract:BACKGROUND:The family Polypteridae, commonly known as "bichirs", is a lineage that diverged early in the evolutionary history of Actinopterygii (ray-finned fish), but has been the subject of far less evolutionary study than other members of that clade. Uncovering patterns of morphological change within Polypteridae pro...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-10-21

    authors: Suzuki D,Brandley MC,Tokita M

    更新日期:2010-01-25 00:00:00

  • Horizontal gene transfer of epigenetic machinery and evolution of parasitism in the malaria parasite Plasmodium falciparum and other apicomplexans.

    abstract:BACKGROUND:The acquisition of complex transcriptional regulatory abilities and epigenetic machinery facilitated the transition of the ancestor of apicomplexans from a free-living organism to an obligate parasite. The ability to control sophisticated gene expression patterns enabled these ancient organisms to evolve sev...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-13-37

    authors: Kishore SP,Stiller JW,Deitsch KW

    更新日期:2013-02-11 00:00:00

  • A mitogenomic phylogeny of chitons (Mollusca: Polyplacophora).

    abstract:BACKGROUND:Polyplacophora, or chitons, have long fascinated malacologists for their distinct and rather conserved morphology and lifestyle compared to other mollusk classes. However, key aspects of their phylogeny and evolution remain unclear due to the few morphological, molecular, or combined phylogenetic analyses, p...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-019-1573-2

    authors: Irisarri I,Uribe JE,Eernisse DJ,Zardoya R

    更新日期:2020-02-05 00:00:00

  • Differential expression of three galaxin-related genes during settlement and metamorphosis in the scleractinian coral Acropora millepora.

    abstract:BACKGROUND:The coral skeleton consists of CaCO3 deposited upon an organic matrix primarily as aragonite. Currently galaxin, from Galaxea fascicularis, is the only soluble protein component of the organic matrix that has been characterized from a coral. Three genes related to galaxin were identified in the coral Acropor...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-9-178

    authors: Reyes-Bermudez A,Lin Z,Hayward DC,Miller DJ,Ball EE

    更新日期:2009-07-29 00:00:00

  • Persistence of duplicated PAC1 receptors in the teleost, Sparus auratus.

    abstract:BACKGROUND:: Duplicated genes are common in vertebrate genomes. Their persistence is assumed to be either a consequence of gain of novel function (neofunctionalisation) or partitioning of the function of the ancestral molecule (sub-functionalisation). Surprisingly few studies have evaluated the extent of such modificat...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-7-221

    authors: Cardoso JC,de Vet EC,Louro B,Elgar G,Clark MS,Power DM

    更新日期:2007-11-12 00:00:00

  • Genetic basis of allochronic differentiation in the fall armyworm.

    abstract:BACKGROUND:Very little is known on how changes in circadian rhythms evolve. The noctuid moth Spodoptera frugiperda (Lepidoptera: Noctuidae) consists of two strains that exhibit allochronic differentiation in their mating time, which acts as a premating isolation barrier between the strains. We investigated the genetic ...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-017-0911-5

    authors: Hänniger S,Dumas P,Schöfl G,Gebauer-Jung S,Vogel H,Unbehend M,Heckel DG,Groot AT

    更新日期:2017-03-06 00:00:00

  • Environment-dependent microevolution in a Mediterranean pine (Pinus pinaster Aiton).

    abstract:BACKGROUND:A central question for understanding the evolutionary responses of plant species to rapidly changing environments is the assessment of their potential for short-term (in one or a few generations) genetic change. In our study, we consider the case of Pinus pinaster Aiton (maritime pine), a widespread Mediterr...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-014-0200-5

    authors: Alía R,Chambel R,Notivol E,Climent J,González-Martínez SC

    更新日期:2014-09-23 00:00:00

  • CpG islands under selective pressure are enriched with H3K4me3, H3K27ac and H3K36me3 histone modifications.

    abstract:BACKGROUND:Histone modification is an epigenetic mechanism that influences gene regulation in eukaryotes. In particular, histone modifications in CpG islands (CGIs) are associated with different chromatin states and with transcription activity. Changes in gene expression play a crucial role in adaptation and evolution....

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-13-145

    authors: Akhtar MM,Scala G,Cocozza S,Miele G,Monticelli A

    更新日期:2013-07-10 00:00:00

  • Forewing color pattern in Micropterigidae (Insecta: Lepidoptera): homologies between contrast boundaries, and a revised hypothesis for the origin of symmetry systems.

    abstract:BACKGROUND:Despite the great importance of lepidopteran wing patterns in various biological disciplines, homologies between wing pattern elements in different moth and butterfly lineages are still not understood. Among other reasons, this may be due to an incomplete understanding of the relationship between color patte...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-016-0687-z

    authors: Schachat SR,Brown RL

    更新日期:2016-05-26 00:00:00

  • Fused eco29kIR- and M genes coding for a fully functional hybrid polypeptide as a model of molecular evolution of restriction-modification systems.

    abstract:BACKGROUND:The discovery of restriction endonucleases and modification DNA methyltransferases, key instruments of genetic engineering, opened a new era of molecular biology through development of the recombinant DNA technology. Today, the number of potential proteins assigned to type II restriction enzymes alone is bey...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-11-35

    authors: Mokrishcheva ML,Solonin AS,Nikitin DV

    更新日期:2011-02-03 00:00:00

  • Patterns of kinesin evolution reveal a complex ancestral eukaryote with a multifunctional cytoskeleton.

    abstract:BACKGROUND:The genesis of the eukaryotes was a pivotal event in evolution and was accompanied by the acquisition of numerous new cellular features including compartmentalization by cytoplasmic organelles, mitosis and meiosis, and ciliary motility. Essential for the development of these features was the tubulin cytoskel...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-10-110

    authors: Wickstead B,Gull K,Richards TA

    更新日期:2010-04-27 00:00:00

  • Mitochondrial genome evolution in fire ants (Hymenoptera: Formicidae).

    abstract:BACKGROUND:Complete mitochondrial genome sequences have become important tools for the study of genome architecture, phylogeny, and molecular evolution. Despite the rapid increase in available mitogenomes, the taxonomic sampling often poorly reflects phylogenetic diversity and is often also biased to represent deeper (...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-10-300

    authors: Gotzek D,Clarke J,Shoemaker D

    更新日期:2010-10-07 00:00:00

  • Limited genomic divergence between intraspecific forms of Culex pipiens under different ecological pressures.

    abstract:BACKGROUND:Divergent selection can be a major driver of ecological speciation. In insects of medical importance, understanding the speciation process is both of academic interest and public health importance. In the West Nile virus vector Culex pipiens, intraspecific pipiens and molestus forms vary in ecological and ph...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-015-0477-z

    authors: Gomes B,Wilding CS,Weetman D,Sousa CA,Novo MT,Savage HM,Almeida AP,Pinto J,Donnelly MJ

    更新日期:2015-09-16 00:00:00

  • Contrasting effects of historical contingency on phenotypic and genomic trajectories during a two-step evolution experiment with bacteria.

    abstract:BACKGROUND:The impact of historical contingency, i.e. the past evolutionary history of a population, on further adaptation is mostly unknown at both the phenotypic and genomic levels. We addressed this question using a two-step evolution experiment. First, replicate populations of Escherichia coli were propagated in fo...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-016-0662-8

    authors: Plucain J,Suau A,Cruveiller S,Médigue C,Schneider D,Le Gac M

    更新日期:2016-04-23 00:00:00

  • Duplicate gene evolution and expression in the wake of vertebrate allopolyploidization.

    abstract:BACKGROUND:The mechanism by which duplicate genes originate - whether by duplication of a whole genome or of a genomic segment - influences their genetic fates. To study events that trigger duplicate gene persistence after whole genome duplication in vertebrates, we have analyzed molecular evolution and expression of h...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-8-43

    authors: Chain FJ,Ilieva D,Evans BJ

    更新日期:2008-02-08 00:00:00

  • Evidence for a high mutation rate at rapidly evolving yeast centromeres.

    abstract:BACKGROUND:Although their role in cell division is essential, centromeres evolve rapidly in animals, plants and yeasts. Unlike the complex centromeres of plants and aminals, the point centromeres of Saccharomcyes yeasts can be readily sequenced to distinguish amongst the possible explanations for fast centromere evolut...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-11-211

    authors: Bensasson D

    更新日期:2011-07-18 00:00:00

  • Neutral genomic signatures of host-parasite coevolution.

    abstract:BACKGROUND:Coevolution is a selective process of reciprocal adaptation in hosts and parasites or in mutualistic symbionts. Classic population genetics theory predicts the signatures of selection at the interacting loci of both species, but not the neutral genome-wide polymorphism patterns. To bridge this gap, we build ...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-019-1556-3

    authors: Živković D,John S,Verin M,Stephan W,Tellier A

    更新日期:2019-12-19 00:00:00

  • Patterns of genetic variation among geographic and host-plant associated populations of the peach fruit moth Carposina sasakii (Lepidoptera: Carposinidae).

    abstract:BACKGROUND:Populations of herbivorous insects may become genetically differentiated because of local adaptation to different hosts and climates as well as historical processes, and further genetic divergence may occur following the development of reproductive isolation among populations. Here we investigate the populat...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/s12862-017-1116-7

    authors: Wang YZ,Li BY,Hoffmann AA,Cao LJ,Gong YJ,Song W,Zhu JY,Wei SJ

    更新日期:2017-12-20 00:00:00

  • Barriers to antigenic escape by pathogens: trade-off between reproductive rate and antigenic mutability.

    abstract:BACKGROUND:A single measles vaccination provides lifelong protection. No antigenic variants that escape immunity have been observed. By contrast, influenza continually evolves new antigenic variants, and the vaccine has to be updated frequently with new strains. Both measles and influenza are RNA viruses with high muta...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-7-229

    authors: Frank SA,Bush RM

    更新日期:2007-11-15 00:00:00

  • Evolution of a hotspot genus: geographic variation in speciation and extinction rates in Banksia (Proteaceae).

    abstract:BACKGROUND:Hotspots of angiosperm species richness and endemism in Mediterranean-climate regions are among the most striking, but least well-understood, geographic patterns of biodiversity. Recent studies have emphasized the importance of rapid diversification within hotspots, compared to non-hotspot regions, as a majo...

    journal_title:BMC evolutionary biology

    pub_type: 杂志文章

    doi:10.1186/1471-2148-13-155

    authors: Cardillo M,Pratt R

    更新日期:2013-08-19 00:00:00