A proposal for further integration of the cyanobacteria under the Bacteriological Code.

Abstract:

:This taxonomic note reviews the present status of the nomenclature of the cyanobacteria under the Bacteriological Code. No more than 13 names of cyanobacterial species have been proposed so far in the International Journal of Systematic and Evolutionary Microbiology (IJSEM)/International Journal of Systematic Bacteriology (IJSB), and of these only five are validly published. The cyanobacteria (Cyanophyta, blue-green algae) are also named under the Botanical Code, and the dual nomenclature system causes considerable confusion. This note calls for a more intense involvement of the International Committee on Systematics of Prokaryotes (ICSP), its Judicial Commission and its Subcommittee on the Taxonomy of Photosynthetic Prokaryotes in the nomenclature of the cyanobacteria under the Bacteriological Code. The establishment of minimal standards for the description of new species and genera should be encouraged in a way that will be acceptable to the botanical authorities as well. This should be followed by the publication of an 'Approved List of Names of Cyanobacteria' in IJSEM. The ultimate goal is to achieve a consensus nomenclature that is acceptable both to bacteriologists and to botanists, anticipating the future implementation of a universal 'Biocode' that would regulate the nomenclature of all organisms living on Earth.

authors

Oren A

doi

10.1099/ijs.0.03008-0

keywords:

subject

Has Abstract

pub_date

2004-09-01 00:00:00

pages

1895-1902

issue

Pt 5

eissn

1466-5026

issn

1466-5034

journal_volume

54

pub_type

杂志文章
  • Polaribacter vadi sp. nov., isolated from a marine gastropod.

    abstract::A Gram-reaction-negative, non-motile, yellow-pigmented, NaCl-requiring bacterial strain, designated LPB0003T, was isolated from a marine gastropod, the granulated dogwhelk (Thais luteostoma). The complete genome sequence of strain LPB0003T (GenBank accession number CP017477), sized 3.81 Mb, had 3296 protein-coding gen...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001591

    authors: Kim E,Shin SK,Choi S,Yi H

    更新日期:2017-01-01 00:00:00

  • Alistipes inops sp. nov. and Coprobacter secundus sp. nov., isolated from human faeces.

    abstract::Culture-based study of the faecal microbiome in two adult female subjects revealed the presence of two obligately anaerobic, non-spore-forming, rod-shaped, non-motile, Gram-negative bacterial strains that represent novel species. The first strain, designated 627T, was a fastidious, slow-growing, indole-positive bacter...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000617

    authors: Shkoporov AN,Chaplin AV,Khokhlova EV,Shcherbakova VA,Motuzova OV,Bozhenko VK,Kafarskaia LI,Efimov BA

    更新日期:2015-12-01 00:00:00

  • Hymenobacter glacieicola sp. nov., isolated from glacier ice.

    abstract::A Gram-stain-negative, rod-shaped, non-motile and red-pink-pigmented bacterial strain, designated B1909T, was isolated from an ice core drilled from Muztagh Glacier on the Tibetan Plateau, China. A phylogenetic tree based on 16S rRNA gene sequences showed that strain B1909T formed a lineage within the genus Hymenobact...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001266

    authors: Liu K,Liu Y,Wang N,Gu Z,Shen L,Xu B,Zhou Y,Liu H,Jiao N

    更新日期:2016-10-01 00:00:00

  • Bacillus halochares sp. nov., a halophilic bacterium isolated from a solar saltern.

    abstract::A novel halophilic bacterium, designated strain MSS4(T), was isolated from the solar salterns of Mesolongi, Greece. The micro-organism, a motile, Gram-stain-positive, aerobic rod, proliferated at salinities of 1.0-4.0 M NaCl, with optimal growth at 2.5 M NaCl. Endospores were not observed. Strain MSS4(T) showed optima...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.014233-0

    authors: Pappa A,Sánchez-Porro C,Lazoura P,Kallimanis A,Perisynakis A,Ventosa A,Drainas C,Koukkou AI

    更新日期:2010-06-01 00:00:00

  • Nomenclature and taxonomy of the genus Salmonella.

    abstract::The nomenclature of the genus Salmonella has reached an unsatisfactory state of affairs, with two systems of nomenclature in circulation. One system, proposed in the 1980s by Le Minor and Popoff, has received wide acceptance, although it does not conform to the rules of the Bacteriological Code. The other system, whic...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 评论,杂志文章

    doi:10.1099/ijs.0.63580-0

    authors: Tindall BJ,Grimont PAD,Garrity GM,Euzéby JP

    更新日期:2005-01-01 00:00:00

  • Hymenobacter psychrophilus sp. nov., a psychrophilic bacterium isolated from soil.

    abstract::A non-motile, rod-shaped, red-pigmented bacterium, designated strain BZ33r(T), was isolated from soil of an industrial site. Cells stained Gram-negative and were aerobic and psychrophilic, showing good growth at 1-20 °C. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain BZ33r(T) was related to ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.023465-0

    authors: Zhang DC,Busse HJ,Liu HC,Zhou YG,Schinner F,Margesin R

    更新日期:2011-04-01 00:00:00

  • Soonwooa purpurea sp. nov., isolated from a fresh water river.

    abstract::A pale-brown-coloured, rod-shaped, non-motile, and Gram-reaction-negative bacterium, strain I54T, was isolated from a water sample of a freshwater river in Iksan, Republic of Korea. The phylogenetic affiliation based on 16S rRNA gene sequence analysis showed that strain I54T belonged to the genus Soonwooa of the famil...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.002441

    authors: Sirra MRS,Padakandla SR,Chae JC

    更新日期:2017-12-01 00:00:00

  • Actinaurispora siamensis gen. nov., sp. nov., a new member of the family Micromonosporaceae.

    abstract::Two actinomycete strains, CM2-8(T) and CM2-12, were isolated from temperate peat swamp forest soil in Chiang Mai Province, Thailand. Their taxonomic positions were determined using a polyphasic approach. Chemotaxonomic characteristics of these strains coincided with those of the family Micromonosporaceae, i.e. cell wa...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.013763-0

    authors: Thawai C,Tanasupawat S,Suwanborirux K,Kudo T

    更新日期:2010-07-01 00:00:00

  • Mesorhizobium waimense sp. nov. isolated from Sophora longicarinata root nodules and Mesorhizobium cantuariense sp. nov. isolated from Sophora microphylla root nodules.

    abstract::In total 14 strains of Gram-stain-negative, rod-shaped bacteria were isolated from Sophora longicarinata and Sophora microphylla root nodules and authenticated as rhizobia on these hosts. Based on the 16S rRNA gene phylogeny, they were shown to belong to the genus Mesorhizobium, and the strains from S. longicarinata w...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.000430

    authors: De Meyer SE,Wee Tan H,Heenan PB,Andrews M,Willems A

    更新日期:2015-10-01 00:00:00

  • Parvibacter caecicola gen. nov., sp. nov., a bacterium of the family Coriobacteriaceae isolated from the caecum of a mouse.

    abstract::A single strain, NR06(T), was isolated from the intestine of a TNF(deltaARE) mouse. Based on phylogenetic analysis of partial 16S rRNA gene sequences, strain NR06(T) belongs in the family Coriobacteriaceae within the Actinobacteria. The most closely related species with validly published names are members of the gener...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.045344-0

    authors: Clavel T,Charrier C,Wenning M,Haller D

    更新日期:2013-07-01 00:00:00

  • Thiobacter subterraneus gen. nov., sp. nov., an obligately chemolithoautotrophic, thermophilic, sulfur-oxidizing bacterium from a subsurface hot aquifer.

    abstract::A novel, thermophilic, obligately chemolithoautotrophic, sulfur/thiosulfate-oxidizing bacterium was isolated from subsurface geothermal aquifer water (temperature approximately 70 degrees C) in the Hishikari gold mine, Japan. Cells of the isolate, designated strain C55T, were motile, straight rods with a single polar ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63389-0

    authors: Hirayama H,Takai K,Inagaki F,Nealson KH,Horikoshi K

    更新日期:2005-01-01 00:00:00

  • Jeongeupia chitinilytica sp. nov., a chitinolytic bacterium isolated from soil.

    abstract::A novel bacterium, designated strain Jchi(T), was isolated from soil in Taiwan and characterized using a polyphasic approach. Cells of strain Jchi(T) were aerobic, Gram-stain-negative, motile and rod-shaped. They contained poly-β-hydroxybutyrate granules and formed dark-yellow colonies. Growth occurred at 20-37 °C (op...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.043125-0

    authors: Chen WM,Chang RC,Cheng CY,Shiau YW,Sheu SY

    更新日期:2013-03-01 00:00:00

  • Pukyongiella litopenaei gen. nov., sp. nov., a novel bacterium isolated from the gut content of a whiteleg shrimp Litopenaeus vannamei.

    abstract::A Gram-negative, aerobic bacterium, designated as SH-1T, was isolated from the gut content of a whiteleg shrimp, Litopenaeus vannamei collected in a shrimp farm in South Korea. The bacterial cells were ovoid rod-shaped, non-motile, oxidase-positive and catalase-negative. Growth was observed at 20-35 °C (optimum, 30 °C...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.004269

    authors: Kim YS,Kim SE,Kim SJ,Jung HK,Kim KH

    更新日期:2020-07-01 00:00:00

  • Hippea jasoniae sp. nov. and Hippea alviniae sp. nov., thermoacidophilic members of the class Deltaproteobacteria isolated from deep-sea hydrothermal vent deposits.

    abstract::Thirteen novel, obligately anaerobic, thermoacidophilic bacteria were isolated from deep-sea hydrothermal vent sites. Four of the strains, designated EP5-r(T), KM1, Mar08-272r(T) and Mar08-368r, were selected for metabolic and physiological characterization. With the exception of strain EP5-r(T), all strains were shor...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.033001-0

    authors: Flores GE,Hunter RC,Liu Y,Mets A,Schouten S,Reysenbach AL

    更新日期:2012-06-01 00:00:00

  • Mycobacterium lacus sp. nov., a novel slowly growing, non-chromogenic clinical isolate.

    abstract::A strain of a novel non-chromogenic mycobacterium was isolated from synovial tissue from a 68-year-old female with bursitis of her right elbow. The slowly growing strain had a unique PCR-restriction enzyme analysis (PRA) profile of the hsp65 gene and 16S rRNA gene sequence in comparison with other mycobacterium specie...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-52-6-2135

    authors: Turenne C,Chedore P,Wolfe J,Jamieson F,Broukhanski G,May K,Kabani A

    更新日期:2002-11-01 00:00:00

  • Noviherbaspirillum suwonense sp. nov., isolated from an air sample.

    abstract::A Gram-stain-negative bacterium, strain 5410S-62T, was isolated from an air sample collected in Suwon, Republic of Korea. It was aerobic, motile, mesophilic and formed rod-shaped cells. Colonies on R2A agar were convex, circular and pale orange with entire margins. Growth occurred at pH 5-9 (optimally at pH 7) and at ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.057372-0

    authors: Kim SJ,Moon JY,Weon HY,Hong SB,Seok SJ,Kwon SW

    更新日期:2014-05-01 00:00:00

  • Nocardioides vastitatis sp. nov., isolated from Taklamakan desert soil.

    abstract::A Gram-stain-positive, aerobic, non-motile, rod-shaped actinobacterium, designated strain 21Sc5-5T, was isolated from a soil sample collected in the Taklamakan desert in Xinjiang Uygur Autonomous Region, PR China and investigated by using a polyphasic approach. Strain 21Sc5-5T grew at 10-37 °C (optimum, 28-30 °C), pH ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.003718

    authors: Liu SW,Xue CM,Li FN,Sun CH

    更新日期:2020-01-01 00:00:00

  • Bensingtonia changbaiensis sp. nov. and Bensingtonia sorbi sp. nov., novel ballistoconidium-forming yeast species from plant leaves.

    abstract::Six ballistoconidium-forming yeast strains that were isolated from plant leaves collected on Changbai Mountain, north-east China, were assigned to the genus Bensingtonia Ingold emend. Nakase & Boekhout due to the formation of asymmetrical ballistoconidia, cream-coloured colonies and Q-9 as the major ubiquinone. Two se...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02736-0

    authors: Wang QM,Bai FY,Zhao JH,Jia JH

    更新日期:2003-11-01 00:00:00

  • Characterization of two urostylid ciliates, Metaurostylopsis flavicana spec. nov. and Tunicothrix wilberti (Lin & Song, 2004) Xu et al., 2006 (Ciliophora, Stichotrichia), from a mangrove nature protection area in China.

    abstract::Two marine stichotrich ciliates, Metaurostylopsis flavicana spec. nov. and Tunicothrix wilberti (Lin & Song, 2004) Xu et al., 2006, isolated from the Shenzhen Mangrove Protection Area on the coast of the South China Sea, were investigated using live observation and protargol impregnation techniques. Metaurostylopsis f...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.024935-0

    authors: Wang Y,Hu X,Huang J,Al-Rasheid KAS,Warren A

    更新日期:2011-07-01 00:00:00

  • Massilia eurypsychrophila sp. nov. a facultatively psychrophilic bacteria isolated from ice core.

    abstract::Strain B528-3(T), a Gram-stain-negative, rod-shaped, aerobic, facultatively psychrophilic bacterium with polar flagella, was isolated from an ice core drilled from Muztagh Glacier, Xinjiang, China. The novel isolate was classified into the genus Massilia. The 16S rRNA gene sequence of the novel isolate shares a pairwi...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.000229

    authors: Shen L,Liu Y,Gu Z,Xu B,Wang N,Jiao N,Liu H,Zhou Y

    更新日期:2015-07-01 00:00:00

  • Candida sorbosivorans sp. nov., a new member of the genus Candida Berkhout.

    abstract::A yeast, strain NCYC 2938T, was isolated from contaminated industrial material. This material was involved in a cascade continuous process for oxidizing sorbitol (D-glucitol) to L-sorbose. The isolate is similar, although not identical, to Candida geochares and Candida magnoliae in its physiological characteristics. S...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/00207713-51-3-1215

    authors: James SA,Bond CJ,Roberts IN

    更新日期:2001-05-01 00:00:00

  • Elstera litoralis gen. nov., sp. nov., isolated from stone biofilms of Lake Constance, Germany.

    abstract::An alphaproteobacterium, strain Dia-1(T), was isolated from algae-dominated biofilms on stones from the littoral zone of Lake Constance, Germany. This bacterium was isolated after initial enrichment in spent medium obtained after growth of a diatom culture. Numerous sugars and some organic acids and alcohols served as...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.026609-0

    authors: Rahalkar M,Bahulikar RA,Deutzmann JS,Kroth PG,Schink B

    更新日期:2012-08-01 00:00:00

  • Detection and identification of a novel 16SrXIII subgroup phytoplasma associated with strawberry red leaf disease in Argentina.

    abstract::Strawberry red leaf phytoplasma was found in strawberry plants from production fields in Lules (Tucumán province) and Bella Vista (Corrientes province), Argentina. Characteristic strawberry red leaf symptoms were stunting, young leaves with yellowing at the edges, mature leaves which curled and were reddish at the aba...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.000276

    authors: Fernández FD,Meneguzzi NG,Guzmán FA,Kirschbaum DS,Conci VC,Nome CF,Conci LR

    更新日期:2015-08-01 00:00:00

  • Mucilaginibacter polytrichastri sp. nov., isolated from a moss (Polytrichastrum formosum), and emended description of the genus Mucilaginibacter.

    abstract::A Gram-staining-negative, rod-shaped, non-spore-forming bacterium, designated strain RG4-7(T), was isolated from the moss Polytrichastrum formosum collected from Gawalong glacier in Tibet, China, and characterized by using a polyphasic taxonomic approach. The predominant fatty acids of strain RG4-7(T) were summed feat...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.055335-0

    authors: Chen XY,Zhao R,Tian Y,Kong BH,Li XD,Chen ZL,Li YH

    更新日期:2014-04-01 00:00:00

  • Natranaerobius thermophilus gen. nov., sp. nov., a halophilic, alkalithermophilic bacterium from soda lakes of the Wadi An Natrun, Egypt, and proposal of Natranaerobiaceae fam. nov. and Natranaerobiales ord. nov.

    abstract::Novel halophilic, alkalithermophilic, Gram-type-positive bacterial strains were isolated from sediment of alkaline, hypersaline lakes of the Wadi An Natrun, Egypt. Cells of strain JW/NM-WN-LFT were rod-shaped, non-spore-forming and non-motile. Strain JW/NM-WN-LFT grew (at pH55 degrees C 9.5) between 35 and 56 degrees ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65068-0

    authors: Mesbah NM,Hedrick DB,Peacock AD,Rohde M,Wiegel J

    更新日期:2007-11-01 00:00:00

  • Gene sequences useful for predicting relatedness of whole genomes in bacteria.

    abstract::Thirty-two protein-encoding genes that are distributed widely among bacterial genomes were tested for the potential usefulness of their DNA sequences in assigning bacterial strains to species. From publicly available data, it was possible to make 49 pairwise comparisons of whole bacterial genomes that were related at ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.02713-0

    authors: Zeigler DR

    更新日期:2003-11-01 00:00:00

  • Polaribacter lacunae sp. nov., isolated from a lagoon.

    abstract::An aerobic, Gram-stain-negative, rod-shaped bacterium, designated strain HMF2268T, was isolated from a lagoon in the Republic of Korea. Comparative 16S rRNA gene sequence analysis showed that strain HMF2268T belonged to the genus Polaribacter and was most closely related to Polaribacter huanghezhanensisSM1202T (96.8 %...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijsem.0.001694

    authors: Kang H,Kim H,Joung Y,Joh K

    更新日期:2017-03-01 00:00:00

  • Treponema berlinense sp. nov. and Treponema porcinum sp. nov., novel spirochaetes isolated from porcine faeces.

    abstract::Limit-dilution procedures were used to isolate seven, helically coiled bacterial strains from faeces of swine that constituted two unidentified taxa. Comparative 16S rRNA gene sequence analysis showed highest similarity values with species of the genus Treponema indicating that the isolates are members of this genus. ...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.63388-0

    authors: Nordhoff M,Taras D,Macha M,Tedin K,Busse HJ,Wieler LH

    更新日期:2005-07-01 00:00:00

  • Candida ecuadorensis sp. nov., an ascomycetous yeast species found in two separate regions of Ecuador.

    abstract::In the course of an on-going study aimed at cataloguing the natural yeast biodiversity found in Ecuador, two strains (CLQCA 13-025 and CLQCA 20-004(T)) were isolated from samples of cow manure and rotten wood collected in two separate provinces of the country (Orellana and Bolívar). These strains were found to represe...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.047555-0

    authors: James SA,Carvajal Barriga EJ,Barahona PP,Cross K,Bond CJ,Roberts IN

    更新日期:2013-01-01 00:00:00

  • Desulfovibrio marinisediminis sp. nov., a novel sulfate-reducing bacterium isolated from coastal marine sediment via enrichment with Casamino acids.

    abstract::To obtain amino acid-utilizing sulfate reducers, enrichment culture was carried out with a medium containing Casamino acids and sulfate and inoculated with coastal marine sediment from the eutrophic Tokyo Bay, Japan. A sulfate reducer, designated strain C/L2(T), was isolated from the sulfide-producing enrichment cultu...

    journal_title:International journal of systematic and evolutionary microbiology

    pub_type: 杂志文章

    doi:10.1099/ijs.0.65750-0

    authors: Takii S,Hanada S,Hase Y,Tamaki H,Uyeno Y,Sekiguchi Y,Matsuura K

    更新日期:2008-10-01 00:00:00