Selected articles from the Third International Workshop on Semantics-Powered Data Analytics (SEPDA 2018).

Abstract:

:In this editorial, we first summarize the Third International Workshop on Semantics-Powered Data Analytics (SEPDA 2018) held on December 3, 2018 in conjunction with the 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2018) in Madrid, Spain, and then briefly introduce five research articles included in this supplement issue, covering topics including Data Analytics, Data Visualization, Text Mining, and Ontology Evaluation.

authors

He Z,Bian J,Tao C,Zhang R

doi

10.1186/s12911-019-0855-3

subject

Has Abstract

pub_date

2019-08-08 00:00:00

pages

148

issue

Suppl 4

issn

1472-6947

pii

10.1186/s12911-019-0855-3

journal_volume

19

pub_type

社论
  • Data mining EEG signals in depression for their diagnostic value.

    abstract:BACKGROUND:Quantitative electroencephalogram (EEG) is one neuroimaging technique that has been shown to differentiate patients with major depressive disorder (MDD) and non-depressed healthy volunteers (HV) at the group-level, but its diagnostic potential for detecting differences at the individual level has yet to be r...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章

    doi:10.1186/s12911-015-0227-6

    authors: Mohammadi M,Al-Azab F,Raahemi B,Richards G,Jaworska N,Smith D,de la Salle S,Blier P,Knott V

    更新日期:2015-12-23 00:00:00

  • Evaluation of infectious diseases and clinical microbiology specialists' preferences for hand hygiene: analysis using the multi-attribute utility theory and the analytic hierarchy process methods.

    abstract:BACKGROUND:Hand hygiene is one of the most effective attempts to control nosocomial infections, and it is an important measure to avoid the transmission of pathogens. However, the compliance of healthcare workers (HCWs) with hand washing is still poor worldwide. Herein, we aimed to determine the best hand hygiene prefe...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章

    doi:10.1186/s12911-017-0528-z

    authors: Suner A,Oruc OE,Buke C,Ozkaya HD,Kitapcioglu G

    更新日期:2017-08-31 00:00:00

  • A community assessment of privacy preserving techniques for human genomes.

    abstract::To answer the need for the rigorous protection of biomedical data, we organized the Critical Assessment of Data Privacy and Protection initiative as a community effort to evaluate privacy-preserving dissemination techniques for biomedical data. We focused on the challenge of sharing aggregate human genomic data (e.g.,...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章

    doi:10.1186/1472-6947-14-S1-S1

    authors: Jiang X,Zhao Y,Wang X,Malin B,Wang S,Ohno-Machado L,Tang H

    更新日期:2014-01-01 00:00:00

  • Evidence-based medicine among internal medicine residents in a community hospital program using smart phones.

    abstract:BACKGROUND:This study implemented and evaluated a point-of-care, wireless Internet access using smart phones for information retrieval during daily clinical rounds and academic activities of internal medicine residents in a community hospital. We did the project to assess the feasibility of using smart phones as an alt...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章

    doi:10.1186/1472-6947-7-5

    authors: León SA,Fontelo P,Green L,Ackerman M,Liu F

    更新日期:2007-02-21 00:00:00

  • Addressing health literacy in patient decision aids.

    abstract:BACKGROUND:Effective use of a patient decision aid (PtDA) can be affected by the user's health literacy and the PtDA's characteristics. Systematic reviews of the relevant literature can guide PtDA developers to attend to the health literacy needs of patients. The reviews reported here aimed to assess: METHODS:We revie...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章,评审

    doi:10.1186/1472-6947-13-S2-S10

    authors: McCaffery KJ,Holmes-Rovner M,Smith SK,Rovner D,Nutbeam D,Clayman ML,Kelly-Blake K,Wolf MS,Sheridan SL

    更新日期:2013-01-01 00:00:00

  • Evaluating predictive modeling algorithms to assess patient eligibility for clinical trials from routine data.

    abstract:BACKGROUND:The necessity to translate eligibility criteria from free text into decision rules that are compatible with data from the electronic health record (EHR) constitutes the main challenge when developing and deploying clinical trial recruitment support systems. Recruitment decisions based on case-based reasoning...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章

    doi:10.1186/1472-6947-13-134

    authors: Köpcke F,Lubgan D,Fietkau R,Scholler A,Nau C,Stürzl M,Croner R,Prokosch HU,Toddenroth D

    更新日期:2013-12-09 00:00:00

  • An algorithm to identify patients with treated type 2 diabetes using medico-administrative data.

    abstract:BACKGROUND:National authorities have to follow the evolution of diabetes to implement public health policies. An algorithm was developed to identify patients with treated type 2 diabetes and estimate its annual prevalence in Luxembourg using health insurance claims when no diagnosis code is available. METHODS:The DIAB...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章

    doi:10.1186/1472-6947-11-23

    authors: Renard LM,Bocquet V,Vidal-Trecan G,Lair ML,Couffignal S,Blum-Boisgard C

    更新日期:2011-04-14 00:00:00

  • Development of a validation algorithm for 'present on admission' flagging.

    abstract:BACKGROUND:The use of routine hospital data for understanding patterns of adverse outcomes has been limited in the past by the fact that pre-existing and post-admission conditions have been indistinguishable. The use of a 'Present on Admission' (or POA) indicator to distinguish pre-existing or co-morbid conditions from...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章

    doi:10.1186/1472-6947-9-48

    authors: Jackson TJ,Michel JL,Roberts R,Shepheard J,Cheng D,Rust J,Perry C

    更新日期:2009-12-01 00:00:00

  • Data cleaning process for HIV-indicator data extracted from DHIS2 national reporting system: a case study of Kenya.

    abstract:BACKGROUND:The District Health Information Software-2 (DHIS2) is widely used by countries for national-level aggregate reporting of health-data. To best leverage DHIS2 data for decision-making, countries need to ensure that data within their systems are of the highest quality. Comprehensive, systematic, and transparent...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章

    doi:10.1186/s12911-020-01315-7

    authors: Gesicho MB,Were MC,Babic A

    更新日期:2020-11-13 00:00:00

  • RESTORE: an exploratory trial of a web-based intervention to enhance self-management of cancer-related fatigue: findings from a qualitative process evaluation.

    abstract:BACKGROUND:Cancer-related fatigue is a distressing symptom experienced by many after cancer treatment. An exploratory randomised controlled trial was conducted to test proof of concept of RESTORE: a web-based tool to enhance self-efficacy to manage cancer-related fatigue. This paper reports findings from a qualitative ...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章,随机对照试验

    doi:10.1186/s12911-015-0214-y

    authors: Myall M,May CR,Grimmett C,May CM,Calman L,Richardson A,Foster CL

    更新日期:2015-11-14 00:00:00

  • Development of a web-based patient decision aid for initiating disease modifying anti-rheumatic drugs using user-centred design methods.

    abstract:BACKGROUND:A main element of patient-centred care, Patient Decision Aids (PtDAs) facilitate shared decision-making (SDM). A recent update of the International Patient Decision Aids Standards (IPDAS) emphasised patient involvement during PtDA development, but omitted a methodology for doing so. This article reports on t...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章

    doi:10.1186/s12911-017-0433-5

    authors: Nota I,Drossaert CHC,Melissant HC,Taal E,Vonkeman HE,Haagsma CJ,van de Laar MAFJ

    更新日期:2017-04-26 00:00:00

  • Decision support at home (DS@HOME)--system architectures and requirements.

    abstract:BACKGROUND:Demographic change with its consequences of an aging society and an increase in the demand for care in the home environment has triggered intensive research activities in sensor devices and smart home technologies. While many advanced technologies are already available, there is still a lack of decision supp...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章,评审

    doi:10.1186/1472-6947-12-43

    authors: Marschollek M

    更新日期:2012-05-28 00:00:00

  • Factors associated with the performance of routine health information system in Yaoundé-Cameroon: a cross-sectional survey.

    abstract:BACKGROUND:Routine Health Information Systems (RHIS) of low-income countries function below the globally expected standard, characterised by the production and use of poor-quality data, or the non-use of good quality data for informed decision making. This has negatively influenced the health service delivery and uptak...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章

    doi:10.1186/s12911-020-01357-x

    authors: Nguefack-Tsague G,Tamfon BB,Ngnie-Teta I,Ngoufack MN,Keugoung B,Bataliack SM,Bilounga Ndongo C

    更新日期:2020-12-17 00:00:00

  • Quantile-based fecal hemoglobin concentration for assessing colorectal neoplasms with 1,263,717 Taiwanese screenees.

    abstract:BACKGROUND:Although fecal hemoglobin concentration (f-Hb) was highly associated with the risk of colorectal neoplasms, current studies on this subject are hampered by skewedness of the data and the ordinal property of f-Hb has not been well studied yet. Our aim was to develop a quantile-based method to estimate adjuste...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章

    doi:10.1186/s12911-019-0812-1

    authors: Peng SM,Chiu HM,Jen HH,Hsu CY,Chen SL,Chiu SY,Yen AM,Fann JC,Lee YC,Chen HH

    更新日期:2019-05-02 00:00:00

  • An app for supporting older people receiving home care - usage, aspects of health and health literacy: a quasi-experimental study.

    abstract:BACKGROUND:During the last decade, there has been an increase in studies describing use of mHealth, using smartphones with apps, in the healthcare system by a variety of populations. Despite this, few interventions including apps are targeting older people receiving home care. Developing mobile technology to its full p...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章

    doi:10.1186/s12911-020-01246-3

    authors: Göransson C,Wengström Y,Hälleberg-Nyman M,Langius-Eklöf A,Ziegert K,Blomberg K

    更新日期:2020-09-15 00:00:00

  • A practical approach for incorporating dependence among fields in probabilistic record linkage.

    abstract:BACKGROUND:Methods for linking real-world healthcare data often use a latent class model, where the latent, or unknown, class is the true match status of candidate record-pairs. This commonly used model assumes that agreement patterns among multiple fields within a latent class are independent. When this assumption is ...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章

    doi:10.1186/1472-6947-13-97

    authors: Daggy JK,Xu H,Hui SL,Gamache RE,Grannis SJ

    更新日期:2013-08-30 00:00:00

  • Predicting patient-reported outcomes following hip and knee replacement surgery using supervised machine learning.

    abstract:BACKGROUND:Machine-learning classifiers mostly offer good predictive performance and are increasingly used to support shared decision-making in clinical practice. Focusing on performance and practicability, this study evaluates prediction of patient-reported outcomes (PROs) by eight supervised classifiers including a l...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章

    doi:10.1186/s12911-018-0731-6

    authors: Huber M,Kurz C,Leidl R

    更新日期:2019-01-08 00:00:00

  • Data-driven approach for creating synthetic electronic medical records.

    abstract:BACKGROUND:New algorithms for disease outbreak detection are being developed to take advantage of full electronic medical records (EMRs) that contain a wealth of patient information. However, due to privacy concerns, even anonymized EMRs cannot be shared among researchers, resulting in great difficulty in comparing the...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章

    doi:10.1186/1472-6947-10-59

    authors: Buczak AL,Babin S,Moniz L

    更新日期:2010-10-14 00:00:00

  • Caregivers' role in using a personal electronic health record: a qualitative study of cancer patients and caregivers in Germany.

    abstract:BACKGROUND:Particularly in the context of severe diseases like cancer, many patients wish to include caregivers in the planning of treatment and care. Many caregivers like to be involved but feel insufficiently enabled. This study aimed at providing insight into patients' and caregivers' perspectives on caregivers' rol...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章

    doi:10.1186/s12911-020-01172-4

    authors: Weis A,Pohlmann S,Poss-Doering R,Strauss B,Ullrich C,Hofmann H,Ose D,Winkler EC,Szecsenyi J,Wensing M

    更新日期:2020-07-13 00:00:00

  • Improving bone mineral density reporting to patients with an illustration of personal fracture risk.

    abstract:BACKGROUND:To determine patients' preferences for, and understanding of, FRAX® fracture risk conveyed through illustrations. METHODS:Drawing on examples from published studies, four illustrations of fracture risk were designed and tested for patient preference, ease of understanding, and perceived risk. We enrolled a ...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章,多中心研究

    doi:10.1186/s12911-014-0101-y

    authors: Edmonds SW,Cram P,Lu X,Roblin DW,Wright NC,Saag KG,Solimeo SL,PAADRN Investigators.

    更新日期:2014-11-25 00:00:00

  • The FeverApp registry - ecological momentary assessment (EMA) of fever management in families regarding conformity to up-to-date recommendations.

    abstract:BACKGROUND:Fever is one of the most common symptoms of pediatric consultations and its mismanagement is a health care burden. Guidelines on fever management are incoherent and data on fever management are still missing. This study protocol describes an app-based registry to evaluate the fever management of parents. OB...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章

    doi:10.1186/s12911-020-01269-w

    authors: Martin D,Wachtmeister J,Ludwigs K,Jenetzky E

    更新日期:2020-10-01 00:00:00

  • Evaluation of syndromic algorithms for detecting patients with potentially transmissible infectious diseases based on computerised emergency-department data.

    abstract:BACKGROUND:The objective of this study was to ascertain the performance of syndromic algorithms for the early detection of patients in healthcare facilities who have potentially transmissible infectious diseases, using computerised emergency department (ED) data. METHODS:A retrospective cohort in an 810-bed University...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章

    doi:10.1186/1472-6947-13-101

    authors: Gerbier-Colomban S,Gicquel Q,Millet AL,Riou C,Grando J,Darmoni S,Potinet-Pagliaroli V,Metzger MH

    更新日期:2013-09-03 00:00:00

  • A usability design checklist for Mobile electronic data capturing forms: the validation process.

    abstract:BACKGROUND:New Specific Application Domain (SAD) heuristics or design principles are being developed to guide the design and evaluation of mobile applications in a bid to improve on the usability of these applications. This is because the existing heuristics are rather generic and are often unable to reveal a large num...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章

    doi:10.1186/s12911-018-0718-3

    authors: Mugisha A,Nankabirwa V,Tylleskär T,Babic A

    更新日期:2019-01-09 00:00:00

  • Factors influencing the surgery intentions and choices of women with early breast cancer: the predictive utility of an extended theory of planned behaviour.

    abstract:BACKGROUND:Women diagnosed with early breast cancer (stage I or II) can be offered the choice between mastectomy or breast conservation surgery with radiotherapy due to equivalence in survival rates. A wide variation in the surgical management of breast cancer and a lack of theoretically guided research on this issue h...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章

    doi:10.1186/1472-6947-13-92

    authors: Sivell S,Elwyn G,Edwards A,Manstead AS,BresDex group.

    更新日期:2013-08-20 00:00:00

  • Performance evaluation of Unified Medical Language System®'s synonyms expansion to query PubMed.

    abstract:BACKGROUND:PubMed is the main access to medical literature on the Internet. In order to enhance the performance of its information retrieval tools, primarily non-indexed citations, the authors propose a method: expanding users' queries using Unified Medical Language System' (UMLS) synonyms i.e. all the terms gathered u...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章

    doi:10.1186/1472-6947-12-12

    authors: Griffon N,Chebil W,Rollin L,Kerdelhue G,Thirion B,Gehanno JF,Darmoni SJ

    更新日期:2012-02-29 00:00:00

  • Decision aids to help older people make health decisions: a systematic review and meta-analysis.

    abstract:BACKGROUND:Decision aids have been overall successful in improving the quality of health decision making. However, it is unclear whether the impact of the results of using decision aids also apply to older people (aged 65+). We sought to systematically review randomized controlled trials (RCTs) and clinical controlled ...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章,meta分析,评审

    doi:10.1186/s12911-016-0281-8

    authors: van Weert JC,van Munster BC,Sanders R,Spijker R,Hooft L,Jansen J

    更新日期:2016-04-21 00:00:00

  • Utility-preserving anonymization for health data publishing.

    abstract:BACKGROUND:Publishing raw electronic health records (EHRs) may be considered as a breach of the privacy of individuals because they usually contain sensitive information. A common practice for the privacy-preserving data publishing is to anonymize the data before publishing, and thus satisfy privacy models such as k-an...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章

    doi:10.1186/s12911-017-0499-0

    authors: Lee H,Kim S,Kim JW,Chung YD

    更新日期:2017-07-11 00:00:00

  • Requirements for guidelines systems: implementation challenges and lessons from existing software-engineering efforts.

    abstract:BACKGROUND:A large body of work in the clinical guidelines field has identified requirements for guideline systems, but there are formidable challenges in translating such requirements into production-quality systems that can be used in routine patient care. Detailed analysis of requirements from an implementation pers...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章

    doi:10.1186/1472-6947-12-16

    authors: Shah H,Allard RD,Enberg R,Krishnan G,Williams P,Nadkarni PM

    更新日期:2012-03-09 00:00:00

  • Predicting cardiovascular health trajectories in time-series electronic health records with LSTM models.

    abstract:BACKGROUND:Cardiovascular disease (CVD) is the leading cause of death in the United States (US). Better cardiovascular health (CVH) is associated with CVD prevention. Predicting future CVH levels may help providers better manage patients' CVH. We hypothesized that CVH measures can be predicted based on previous measure...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章

    doi:10.1186/s12911-020-01345-1

    authors: Guo A,Beheshti R,Khan YM,Langabeer JR 2nd,Foraker RE

    更新日期:2021-01-06 00:00:00

  • Recommended practices for computerized clinical decision support and knowledge management in community settings: a qualitative study.

    abstract:BACKGROUND:The purpose of this study was to identify recommended practices for computerized clinical decision support (CDS) development and implementation and for knowledge management (KM) processes in ambulatory clinics and community hospitals using commercial or locally developed systems in the U.S. METHODS:Guided b...

    journal_title:BMC medical informatics and decision making

    pub_type: 杂志文章

    doi:10.1186/1472-6947-12-6

    authors: Ash JS,Sittig DF,Guappone KP,Dykstra RH,Richardson J,Wright A,Carpenter J,McMullen C,Shapiro M,Bunce A,Middleton B

    更新日期:2012-02-14 00:00:00