Fine-mapping of lipid regions in global populations discovers ethnic-specific signals and refines previously identified lipid loci.

Abstract:

:Genome-wide association studies have identified over 150 loci associated with lipid traits, however, no large-scale studies exist for Hispanics and other minority populations. Additionally, the genetic architecture of lipid-influencing loci remains largely unknown. We performed one of the most racially/ethnically diverse fine-mapping genetic studies of HDL-C, LDL-C, and triglycerides to-date using SNPs on the MetaboChip array on 54,119 individuals: 21,304 African Americans, 19,829 Hispanic Americans, 12,456 Asians, and 530 American Indians. The majority of signals found in these groups generalize to European Americans. While we uncovered signals unique to racial/ethnic populations, we also observed systematically consistent lipid associations across these groups. In African Americans, we identified three novel signals associated with HDL-C (LPL, APOA5, LCAT) and two associated with LDL-C (ABCG8, DHODH). In addition, using this population, we refined the location for 16 out of the 58 known MetaboChip lipid loci. These results can guide tailored screening efforts, reveal population-specific responses to lipid-lowering medications, and aid in the development of new targeted drug therapies.

journal_name

Hum Mol Genet

journal_title

Human molecular genetics

authors

Zubair N,Graff M,Luis Ambite J,Bush WS,Kichaev G,Lu Y,Manichaikul A,Sheu WH,Absher D,Assimes TL,Bielinski SJ,Bottinger EP,Buzkova P,Chuang LM,Chung RH,Cochran B,Dumitrescu L,Gottesman O,Haessler JW,Haiman C,Heiss

doi

10.1093/hmg/ddw358

subject

Has Abstract

pub_date

2016-12-15 00:00:00

pages

5500-5512

issue

24

eissn

0964-6906

issn

1460-2083

pii

2595394

journal_volume

25

pub_type

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