A PHYLOGENETIC APPROACH TO THE ESTIMATION OF PHYTOPLANKTON TRAITS(1).

Abstract:

:The quantitative characterization of the ecology of individual phytoplankton taxa is essential for model resolution of many aspects of aquatic ecosystems. Existing literature cannot directly parameterize all phytoplankton taxa of interest, as many traits and taxa have not been sampled. However, valuable clues on the value of traits are found in the evolutionary history of species and in common correlations between traits. These two resources were exploited with an existing, statistically consistent method built upon evolutionary concepts. From a new data set with >700 observations on freshwater phytoplankton traits and a qualitative phytoplankton phylogeny, estimates were derived for the size, growth rate, phosphate affinity, and susceptibility to predation of 277 phytoplankton types, from evolutionary ancestors to present-day species. These estimates account simultaneously for phylogenetic relationships between types, as imposed by the phylogeny, and approximate power-law relationships (e.g., allometric scaling laws) between traits, as reconstructed from the data set. Results suggest that most phytoplankton traits are to some extent conserved in evolution: cross-validation demonstrated that the use of phylogenetic information significantly improves trait value estimates. By providing trait value estimates as well as uncertainties, these results could benefit most quantitative studies involving phytoplankton.

journal_name

J Phycol

journal_title

Journal of phycology

authors

Bruggeman J

doi

10.1111/j.1529-8817.2010.00946.x

subject

Has Abstract

pub_date

2011-02-01 00:00:00

pages

52-65

issue

1

eissn

0022-3646

issn

1529-8817

journal_volume

47

pub_type

杂志文章
  • Five chemically rich species of tropical marine cyanobacteria of the genus Okeania gen. nov. (Oscillatoriales, Cyanoprokaryota).

    abstract::An adverse consequence of applying morphology-based taxonomic systems to catalog cyanobacteria, which generally are limited in the number of available morphological characters, is a fundamental underestimation of natural biodiversity. In this study, we further dissect the polyphyletic cyanobacterial genus Lyngbya and ...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/jpy.12115

    authors: Engene N,Paul VJ,Byrum T,Gerwick WH,Thor A,Ellisman MH

    更新日期:2013-12-01 00:00:00

  • Phylogenetic analysis of LSU and SSU rDNA group I introns of lichen photobionts associated with the genera Xanthoria and Xanthomendoza (Teloschistaceae, lichenized Ascomycetes).

    abstract::We studied group I introns in sterile cultures of selected groups of lichen photobionts, focusing on Trebouxia species associated with Xanthoria s. lat. (including Xanthomendoza spp.; lichen-forming ascomycetes). Group I introns were found inserted after position 798 (Escherichia coli numbering) in the large subunit (...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/jpy.12126

    authors: Nyati S,Bhattacharya D,Werth S,Honegger R

    更新日期:2013-12-01 00:00:00

  • Relationship between the dinoflagellate cyst Spiniferites pachydermus and Gonyaulax ellegaardiae sp. nov. from Izmir Bay, Turkey, and molecular characterization.

    abstract::Here, we established the cyst-motile stage relation-ship for Spiniferites pachydermus through incubation of cysts with a characteristically microreticulate/perforate surface isolated from Izmir Bay in the eastern Aegean Sea of the eastern Mediterranean. The morphology of the motile stage was similar to Gonyaulax spini...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/jpy.12304

    authors: Mertens KN,Aydin H,Uzar S,Takano Y,Yamaguchi A,Matsuoka K

    更新日期:2015-06-01 00:00:00

  • NITZSCHIA ALICAE SP. NOV. AND N. PURIFORMIS SP. NOV., NEW DIATOMS FROM EUROPEAN RIVERS AND COMPARISON WITH THE TYPE MATERIAL OF N. SUBLINEARIS AND N. PURA(1).

    abstract::Nitzschia sublinearis Hustedt and N. pura Hustedt are common oligosaprobic freshwater diatom species that frequently occur in diatom inventories, thus being important in water quality studies. Both are considered as species with overlapping diagnostic criteria in several floras, which is typical of the whole genus Nit...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/j.1529-8817.2009.00692.x

    authors: Hlúbiková D,Blanco S,Falasco E,Gomà J,Hoffmann L,Ector L

    更新日期:2009-06-01 00:00:00

  • Analysis of diversity of chromophytic phytoplankton in a mangrove ecosystem using rbcL gene sequencing.

    abstract::Phytoplankton forms the basis of primary production in mangrove environments. The phylogeny and diversity based on the amplification and sequencing of rbcL, the large subunit encoding the key enzyme ribulose-1, 5-bisphosphate carboxylase/oxygenase was investigated for improved understanding of the community structure ...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/jpy.12163

    authors: Samanta B,Bhadury P

    更新日期:2014-04-01 00:00:00

  • CAROTENOID PIGMENTS OF THE DINOFLAGELLATE GLENODINIUM FOLIACEUM STEIN(1) (2).

    abstract::The marine dinoflagellate, Glenoclinium foliaceum Stein, has been shown to contain fucoxanthin, instead of peridinin, as the major xanthophyll. In addition, 2 carotenes-β-carotene and a compound with spectral properties reminiscent of isomerized y-carotene-and 2 xanthophylls-diadinoxanthin and an unidentified compound...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/j.1529-8817.1968.tb04706.x

    authors: Mandelli EF

    更新日期:1968-12-01 00:00:00

  • MOLECULAR PHYLOGENY OF DINOPHYSOID DINOFLAGELLATES: THE SYSTEMATIC POSITION OF OXYPHYSIS OXYTOXOIDES AND THE DINOPHYSIS HASTATA GROUP (DINOPHYSALES, DINOPHYCEAE)(1).

    abstract::The dinophysoid dinoflagellates are currently divided into three families: Amphisoleniaceae, Dinophysaceae (mainly Dinophysis Ehrenb. and Phalacroma F. Stein), and Oxyphysaceae, the latter including only one member, Oxyphysis oxytoxoides Kof. Phalacroma has been recently reinstated separately from Dinophysis, and its ...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/j.1529-8817.2011.00964.x

    authors: Gómez F,López-García P,Moreira D

    更新日期:2011-04-01 00:00:00

  • CHLOROPLAST PIGMENTS OF CHLOROMONADOPHYCEAE.

    abstract::The chloroplast pigments of 2 species of Chloro-monadophyceae have been examined. Both Gonyo-stomum semen and Vacuolaria virescens possessed only one chlorophyll, chlorophyll a. Gonyostomum contained 4 carotenoids, but not fucoxanthin and peridinin. Vacuolaria also possessed 4 carotenoids which have been identified as...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/j.1529-8817.1966.tb04599.x

    authors: Chapman DJ,Haxo FT

    更新日期:1966-06-01 00:00:00

  • SURFACTANT PROMOTION OF THE INHIBITORY EFFECTS OF CUPRIC GLUTAMATE ON THE DINOFLAGELLATE ALEXANDRIUM(1).

    abstract::We studied cupric glutamate as a novel algicide for marine harmful algae and hexadecyltrimethyleamine bromide (HDTMAB) as an accelerant. Cupric glutamate had an excellent ability to inhibit the growth of Alexandrium sp. LC3, but the inhibition efficiency did not increase with higher cupric glutamate concentration. The...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/j.1529-8817.2008.00591.x

    authors: Li H,Miao J,Cui F,Li G

    更新日期:2008-12-01 00:00:00

  • Tackling Harmful Cyanobacterial Blooms with Chinese Colleagues: We're All in the Same Boat.

    abstract::Harmful cyanobacterial blooms (CyanoHABs) are a rapidly proliferating global problem, threatening the use and sustainability of our freshwater resources. In recent decades, the United States, China, and other developed and developing countries threatened by CyanoHAB expansion have established collaborative efforts aim...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/jpy.13058

    authors: Paerl HW

    更新日期:2020-12-01 00:00:00

  • BLOOM OF THE GIANT ANADYOMENE GIGANTODICTYON SP. NOV. (ANADYOMENACEAE, CLADOPHORALES) FROM THE OUTER SLOPE (25-50 m) OF THE BELIZE BARRIER REEF(1).

    abstract::A giant form of Anadyomene, most similar to Anadyomene pavonina (J. Agardh) Wille, a rare and diminutive alga endemic to Florida, appeared as up to 10 m long net-like strands covering 10%-80% of a 0.5 km region of the 25-50 m deep Belizean outer reef slope where none had been present up to 12 months earlier. This new ...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/j.1529-8817.2011.01108.x

    authors: Littler MM,Littler DS

    更新日期:2012-02-01 00:00:00

  • HIGH-LIGHT AND SODIUM CHLORIDE STRESS DIFFERENTIALLY REGULATE THE BIOSYNTHESIS OF ASTAXANTHIN IN CHLORELLA ZOFINGIENSIS (CHLOROPHYCEAE)(1).

    abstract::Although light and salt stresses are known to enhance the biosynthesis of astaxanthin in certain green algae, the mechanism of their action remains largely unknown. Here we report the regulation of the genes encoding phytoene desaturase (PDS), carotenoid hydroxylase (CHYb), and carotenoid ketolase (BKT) in the green a...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/j.1529-8817.2009.00689.x

    authors: Li Y,Huang J,Sandmann G,Chen F

    更新日期:2009-06-01 00:00:00

  • ATP and related purines stimulate motility, spatial congregation, and coalescence in red algal spores.

    abstract::Adenosine 5'-triphosphate (ATP) is a versatile extracellular signal along the tree of life, whereas cAMP plays a major role in vertebrates as an intracellular messenger for hormones, transmitters, tastants, and odorants. Since red algal spore coalescence may be considered analogous to the congregation process of socia...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/jpy.12278

    authors: Huidobro-Toro JP,Donoso V,Flores V,Santelices B

    更新日期:2015-04-01 00:00:00

  • NEUTRAL LIPID AND CARBOHYDRATE PRODUCTIVITIES AS A RESPONSE TO NITROGEN STATUS IN ISOCHRYSIS SP. (T-ISO; HAPTOPHYCEAE): STARVATION VERSUS LIMITATION(1).

    abstract::Partitioning of the carbon (C) fixed during photosynthesis between neutral lipids (NL) and carbohydrates was investigated in Isochrysis sp. (Haptophyceae) in relation to its nitrogen (N) status. Using batch and nitrate-limited continuous cultures, we studied the response of these energy reserve pools to both condition...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/j.1529-8817.2012.01154.x

    authors: Lacour T,Sciandra A,Talec A,Mayzaud P,Bernard O

    更新日期:2012-06-01 00:00:00

  • Algal taxonomy forum: Algal Taxonomist, Let Serendipity Reign!

    abstract::The publication of a mini-review by Olivier De Clerck et al. in this issue of the Journal of Phycology presented an opportunity to open a dialogue on challenges faced by contemporary algal taxonomists. The Editorial Office solicited the following two additional contributions in response to De Clerck et al.'s paper; th...

    journal_title:Journal of phycology

    pub_type: 信件

    doi:10.1111/jpy.12041

    authors: Druehl L

    更新日期:2013-04-01 00:00:00

  • Transcriptomic Insights into the Life History of Bolidophytes, the Sister Lineage to Diatoms.

    abstract::Diatoms are perhaps the most diverse lineage of eukaryotic algae, with their siliceous cell wall and diplontic life history often considered to have played important roles in their extraordinary diversification. The characteristic diminution of the diatom cell wall over the course of vegetative growth provides a relia...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/jpy.12222

    authors: Kessenich CR,Ruck EC,Schurko AM,Wickett NJ,Alverson AJ

    更新日期:2014-12-01 00:00:00

  • THE RELATION BETWEEN N2 FIXATION AND H2 METABOLISM IN THE MARINE FILAMENTOUS NONHETEROCYSTOUS CYANOBACTERIUM LYNGBYA AESTUARII CCY 9616(1).

    abstract::The marine filamentous nonheterocystous nitrogen-fixing cyanobacterium Lyngbya aestuarii (F. K. Mert.) Liebman ex Gomont CCY 9616 was grown under diazotrophic and nondiazotrophic conditions and under an alternating 16:8 light:dark (L:D) regime. Nitrogenase activity appeared just before the onset of the dark period, re...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/j.1529-8817.2009.00714.x

    authors: Ferreira D,Stal LJ,Moradas-Ferreira P,Mendes MV,Tamagnini P

    更新日期:2009-08-01 00:00:00

  • KOBAYASIELLA BEBOURENSIS, A NEW FRESHWATER DIATOM SPECIES FROM REUNION ISLAND AND FURTHER OBSERVATIONS ON K. MICROPUNCTATA AND K. JAAGII(1).

    abstract::The genus Kobayasiella includes species difficult or even impossible to identify in LM. Only EM allows observation of the ultrastructural features helping in diagnostic species circumscription. Recent surveys of the epilithic diatoms in the running waters of Reunion Island led to the discovery of a new species, K. beb...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/j.1529-8817.2012.01115.x

    authors: Le Cohu R,Gassiole G,Coste M

    更新日期:2012-04-01 00:00:00

  • Effects of light and temperature on the growth of Takayama helix (Dinophyceae): mixotrophy as a survival strategy against photoinhibition.

    abstract::Takayama helix is a mixotrophic dinoflagellate that can feed on diverse algal prey. We explored the effects of light intensity and water temperature, two important physical factors, on its autotrophic and mixotrophic growth rates when fed on Alexandrium minutum CCMP1888. Both the autotrophic and mixotrophic growth rat...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/jpy.12907

    authors: Ok JH,Jeong HJ,Lim AS,You JH,Kang HC,Kim SJ,Lee SY

    更新日期:2019-10-01 00:00:00

  • First report of fossilized cysts produced by the benthic Bysmatrum subsalsum (Dinophyceae) from a shallow Mexican lagoon in the Gulf of Mexico.

    abstract::Cysts belonging to the benthic dinoflagellate Bysmatrum subsalsum were recovered from palynologically treated sediments collected in the Alvarado Lagoon (southwestern Gulf of Mexico). The cysts are proximate, reflecting the features of the parent thecal stage, and their autofluorescence implies a dinosporin compositio...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/jpy.12257

    authors: Limoges A,Mertens KN,Ruíz-Fernández AC,de Vernal A

    更新日期:2015-02-01 00:00:00

  • Molecular and morphological diversity of Narragansett Bay (RI, USA) Ulva (Ulvales, Chlorophyta) populations.

    abstract::Macroalgal bloom-forming species occur in coastal systems worldwide. However, due to overlapping morphologies in some taxa, accurate taxonomic assessment and classification of these species can be quite challenging. We investigated the molecular and morphological characteristics of 153 specimens of bloom-forming Ulva ...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/jpy.12108

    authors: Guidone M,Thornber C,Wysor B,O'Kelly CJ

    更新日期:2013-10-01 00:00:00

  • Organellar genomics: a useful tool to study evolutionary relationships and molecular evolution in Gracilariaceae (Rhodophyta).

    abstract::Gracilariaceae has a worldwide distribution including numerous economically important species. We applied high-throughput sequencing to obtain organellar genomes (mitochondria and chloroplast) from 10 species of Gracilariaceae and, combined with published genomes, to infer phylogenies and compare genome architecture a...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/jpy.12765

    authors: Iha C,Grassa CJ,Lyra GM,Davis CC,Verbruggen H,Oliveira MC

    更新日期:2018-12-01 00:00:00

  • Analysis of rbcL sequences reveals the global biodiversity, community structure, and biogeographical pattern of thermoacidophilic red algae (Cyanidiales).

    abstract::Thermoacidophilic cyanidia (Cyanidiales) are the primary photosynthetic eukaryotes in volcanic areas. These red algae also serve as important model organisms for studying life in extreme habitats. The global biodiversity and community structure of Cyanidiales remain unclear despite previous sampling efforts. Here, we ...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/jpy.12310

    authors: Hsieh CJ,Zhan SH,Lin Y,Tang SL,Liu SL

    更新日期:2015-08-01 00:00:00

  • Misleading morphologies and the importance of sequencing type specimens for resolving coralline taxonomy (Corallinales, Rhodophyta): Pachyarthron cretaceum is Corallina officinalis.

    abstract::Coralline red algae play a key role in the ecology of near shore marine ecosystems and are increasingly being used to study the effects of climate change in the marine environment. Corallines are very difficult to identify to species, and even to genus, using morpho-anatomy, likely complicating studies of their ecolog...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/jpy.12205

    authors: Hind KR,Gabrielson PW,Lindstrom SC,Martone PT

    更新日期:2014-08-01 00:00:00

  • Whole community estimates of macroalgal pigment concentration within two southern New Zealand kelp forests1.

    abstract::Light availability is a fundamental factor that controls the productivity and distribution of macroalgae and is highly variable, both spatially and temporally, in subtidal coastal systems. Our comprehension of how macroalgae respond to such variability is a significant knowledge gap that limits our understanding of ho...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/jpy.12884

    authors: Desmond MJ,Pajusalu L,Pritchard DW,Stephens TA,Hepburn CD

    更新日期:2019-08-01 00:00:00

  • Origin and evolution of chloroplast group I introns in lichen algae.

    abstract::The history of group I introns is characterized by repeated horizontal transfers, even among phylogenetically distant species. The symbiogenetic thalli of lichens are good candidates for the horizontal transfer of genetic material among distantly related organisms, such as fungi and green algae. The main goal of this ...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/jpy.12600

    authors: Del Hoyo A,Álvarez R,Gasulla F,Casano LM,Del Campo EM

    更新日期:2018-02-01 00:00:00

  • Ulva (Chlorophyta, Ulvales) Biodiversity in the North Adriatic Sea (Mediterranean, Italy): Cryptic Species and New Introductions.

    abstract::Ulva Linnaeus (Ulvophyceae, Ulvales) is a genus of green algae widespread in different aquatic environments. Members of this genus show a very simple morphology and a certain degree of phenotypic plasticity, heavily influenced by environmental conditions, making difficult the delineation of species by morphological fe...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/jpy.12005

    authors: Wolf MA,Sciuto K,Andreoli C,Moro I

    更新日期:2012-12-01 00:00:00

  • Comparison of UVB effects on growth and induction of UVB screening compounds in isolates of metaphytic algae from temperate zone streams and ponds.

    abstract::Filaments in the surface layers of metaphytic mats are exposed to high photon flux densities of PAR and UVBR. We investigated the effect of UVBR exposure on growth of eight isolates of common metaphytic algae (Cladophora, Mougeotia, Oedogonium, Pithophora, Spirogyra, and Zygnema) acclimated to either high or low PAR l...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/jpy.12786

    authors: O'Neal SW,Hoover AM

    更新日期:2018-12-01 00:00:00

  • Patterns of Symbiodinium (Dinophyceae) diversity and assemblages among diverse hosts and the coral reef environment of Lizard Island, Australia.

    abstract::Large-scale environmental disturbances may impact both partners in coral host-Symbiodinium systems. Elucidation of the assembly patterns in such complex and interdependent communities may enable better prediction of environmental impacts across coral reef ecosystems. In this study, we investigated how the community co...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/jpy.12749

    authors: Ziegler M,Stone E,Colman D,Takacs-Vesbach C,Shepherd U

    更新日期:2018-08-01 00:00:00

  • CHANGES IN NUTRIENT CONTENT OF PALMARIA PALMATA IN RESPONSE TO VARIABLE LIGHT AND UPWELLING IN NORTHERN SPAIN(1).

    abstract::Light has been identified as one of the main factors affecting seaweed ecophysiology. We investigated the dependence of nutrient metabolism on sun and shade light conditions and whether episodes of upwelling of nutrient-rich subsuperficial water could reduce the summer nutrient limitation driving physiological changes...

    journal_title:Journal of phycology

    pub_type: 杂志文章

    doi:10.1111/j.1529-8817.2007.00440.x

    authors: Martínez B,Rico JM

    更新日期:2008-02-01 00:00:00