Can Machines Learn Respiratory Virus Epidemiology?: A Comparative Study of Likelihood-Free Methods for the Estimation of Epidemiological Dynamics.

abstract：:Biological nitrogen fixation plays a crucial role in the nitrogen cycle. An ability to fix atmospheric nitrogen, reducing it to ammonium, was described for multiple species of Bacteria and Archaea. The transcriptional regulatory network for nitrogen fixation was extensively studied in several representatives of the cl...

journal_title：Frontiers in microbiology

authors： Tsoy OV,Ravcheev DA,Čuklina J,Gelfand MS

更新日期：2016-08-26 00:00:00

abstract：:In bacteria, the GntR family is a widespread family of transcription factors responsible for the regulation of a myriad of biological processes. In contrast, despite their occurrence in archaea only a little information is available on the function of GntR-like transcription factors in this domain of life. The thermoa...

journal_title：Frontiers in microbiology

authors： Lemmens L,Tilleman L,De Koning E,Valegård K,Lindås AC,Van Nieuwerburgh F,Maes D,Peeters E

更新日期：2019-09-10 00:00:00

abstract：:Granulocytes mediate the first line of defense against infectious diseases in humans as well as animals and they are well known as multitasking cells. They can mediate antimicrobial activity by different strategies depending on the pathogen they encounter. Besides phagocytosis, a key strategy against extracellular pat...

journal_title：Frontiers in microbiology

authors： de Buhr N,Bonilla MC,Jimenez-Soto M,von Köckritz-Blickwede M,Dolz G

更新日期：2018-05-15 00:00:00

abstract：:Cyanobacteria are major contributors to global biogeochemical cycles. The genetic diversity among Cyanobacteria enables them to thrive across many habitats, although only a few studies have analyzed the association of phylogenomic clades to specific environmental niches. In this study, we adopted an ecogenomics strate...

journal_title：Frontiers in microbiology

authors： Walter JM,Coutinho FH,Dutilh BE,Swings J,Thompson FL,Thompson CC

更新日期：2017-11-14 00:00:00

abstract：:Corynebacterium pseudodiphtheriticum is a Gram-positive bacterium found as a member of the normal microbiota of the upper respiratory tract. It was suggested that C. pseudodiphtheriticum may be potentially used as a next-generation probiotic for nasal application, although no deep studies were performed in this regard...

journal_title：Frontiers in microbiology

authors： Kanmani P,Clua P,Vizoso-Pinto MG,Rodriguez C,Alvarez S,Melnikov V,Takahashi H,Kitazawa H,Villena J

更新日期：2017-08-23 00:00:00

abstract：:With the advance of sequencing technology and microbiology, the microorganisms have been found to be closely related to various important human diseases. The increasing identification of human microbe-disease associations offers important insights into the underlying disease mechanism understanding from the perspectiv...

journal_title：Frontiers in microbiology

authors： Huang ZA,Chen X,Zhu Z,Liu H,Yan GY,You ZH,Wen Z

更新日期：2017-02-22 00:00:00

abstract：:Low-dose tolerance using heat-killed mycobacteria has been tested as a means of stopping progression toward active tuberculosis (TB) lesions in a human-like murine model using C3HeB/FeJ mice. In the present study, we studied the effect of different treatment schedules with heat-killed non-tuberculous-mycobacteria (NTM...

journal_title：Frontiers in microbiology

authors： Cardona P,Marzo-Escartín E,Tapia G,Díaz J,García V,Varela I,Vilaplana C,Cardona PJ

更新日期：2016-01-05 00:00:00

abstract：:Probiotics are functional foods that can effectively regulate lipid reduction and maintain body health. In this study, a strain of Lactobacillus fermentum CQPC04 (LF-CQPC04) isolated from traditional naturally fermented vegetables (Sichuan pickles) was studied, and its effects on lipid reduction in mice, as well as it...

journal_title：Frontiers in microbiology

authors： Yi R,Tan F,Zhou X,Mu J,Li L,Du X,Yang Z,Zhao X

更新日期：2020-09-03 00:00:00

abstract：:Despite being one of the most important human fungal pathogens, Candida albicans has not been studied extensively at the level of protein-protein interactions (PPIs) and data on PPIs are not readily available in online databases. In January 2018, the database called "Biological General Repository for Interaction Datas...

journal_title：Frontiers in microbiology

authors： Schoeters F,Van Dijck P

更新日期：2019-08-07 00:00:00

abstract：:Aquatic ecosystems are frequently considered as the final receiving environments of anthropogenic pollutants such as pharmaceutical residues or antibiotic resistant bacteria, and as a consequence tend to form reservoirs of antibiotic resistance genes. Considering the global threat posed by the antibiotic resistance, t...

journal_title：Frontiers in microbiology

authors： De la Cruz Barrón M,Merlin C,Guilloteau H,Montargès-Pelletier E,Bellanger X

更新日期：2018-07-02 00:00:00

abstract：:Human campylobacteriosis is the leading food-borne zoonosis in industrialized countries. This study characterized the clonal population structure, antimicrobial resistance profiles and occurrence of antimicrobial resistance determinants of a set of Campylobacter jejuni strains isolated from broiler carcasses in Belgiu...

journal_title：Frontiers in microbiology

authors： Elhadidy M,Miller WG,Arguello H,Álvarez-Ordóñez A,Duarte A,Dierick K,Botteldoorn N

更新日期：2018-05-17 00:00:00

abstract：:Previous studies showed differences in the regulatory response to C/N balance in Prochlorococcus with respect to other cyanobacteria, but no information was available about its causes, or the ecological advantages conferred to thrive in oligotrophic environments. We addressed the changes in key enzymes (glutamine synt...

journal_title：Frontiers in microbiology

authors： Domínguez-Martín MA,López-Lozano A,Clavería-Gimeno R,Velázquez-Campoy A,Seidel G,Burkovski A,Díez J,García-Fernández JM

更新日期：2018-01-09 00:00:00

abstract：:Genomic analysis of the methanotrophic verrucomicrobium "Methylacidiphilum infernorum" strain V4 has shown that most pathways conferring its methanotrophic lifestyle are similar to those found in proteobacterial methanotrophs. However, due to the large sequence divergence of its methane monooxygenase-encoding genes (p...

journal_title：Frontiers in microbiology

authors： Sharp CE,Stott MB,Dunfield PF

更新日期：2012-08-17 00:00:00

abstract：:Methylorubrum extorquens (formerly Methylobacterium extorquens) AM1 is a methylotrophic bacterium with a versatile lifestyle. Various carbon sources including acetate, succinate and methanol are utilized by M. extorquens AM1 with the latter being a promising inexpensive substrate for use in the biotechnology industry....

journal_title：Frontiers in microbiology

authors： Lim CK,Villada JC,Chalifour A,Duran MF,Lu H,Lee PKH

更新日期：2019-05-09 00:00:00

abstract：:Newborns and unvaccinated infants, compared to other age groups, are more susceptible to pertussis infection, manifesting severe symptoms leading to a higher mortality. The recent increase in pertussis cases demands more effective strategies to overcome this major health problem. In parallel with maternal-immunization...

journal_title：Frontiers in microbiology

authors： Martin Aispuro P,Ambrosis N,Zurita ME,Gaillard ME,Bottero D,Hozbor DF

更新日期：2020-04-17 00:00:00

abstract：:The rice bacterial blight pathogen Xanthomonas oryzae pv. oryzae (Xoo) injects transcription activator-like effectors (TALEs) that bind and activate host "susceptibility" (S) genes important for disease. Clade III SWEET genes are major S genes for bacterial blight. The resistance genes xa5, which reduces TALE activity...

journal_title：Frontiers in microbiology

authors： Carpenter SCD,Mishra P,Ghoshal C,Dash PK,Wang L,Midha S,Laha GS,Lore JS,Kositratana W,Singh NK,Singh K,Patil PB,Oliva R,Patarapuwadol S,Bogdanove AJ,Rai R

更新日期：2018-11-13 00:00:00

abstract：:Metabolic gene clusters (MGCs), physically co-localized genes participating in the same metabolic pathway, are signature features of fungal genomes. MGCs are most often observed in specialized metabolism, having evolved in individual fungal lineages in response to specific ecological needs, such as the utilization of ...

journal_title：Frontiers in microbiology

authors： Wisecaver JH,Rokas A

更新日期：2015-03-03 00:00:00

abstract：:Understanding the seasonal emergence and reemergence of cholera is challenging due to the complex dynamics of different protagonists. The abundance of Vibrio cholerae, the causative agent of cholera and a natural inhabitant of aquatic environments, fluctuates according to abiotic, and biotic factors. Among the biotic ...

journal_title：Frontiers in microbiology

authors： Constantin de Magny G,Hasan NA,Roche B

更新日期：2014-04-02 00:00:00

abstract：:When one thinks of the Gram+ cell wall, the peptidoglycan (PG) scaffold in particular comes to mind. However, the cell wall also consists of many other components, for example those that are covalently linked to the PG: the wall teichoic acid and the cell wall proteins tethered by the sortase. In addition, there are c...

journal_title：Frontiers in microbiology

authors： Nguyen MT,Matsuo M,Niemann S,Herrmann M,Götz F

更新日期：2020-09-18 00:00:00

abstract：:This study evaluated the efficacy of the essential oil from Mentha spicata L. (MSEO) and M. × villosa Huds. (MVEO) to inactivate Candida albicans, C. tropicalis, Pichia anomala and Saccharomyces cerevisiae in Sabouraud dextrose broth and cashew, guava, mango, and pineapple juices during 72 h of refrigerated storage. T...

journal_title：Frontiers in microbiology

authors： da Cruz Almeida ET,de Medeiros Barbosa I,Tavares JF,Barbosa-Filho JM,Magnani M,de Souza EL

更新日期：2018-05-25 00:00:00

abstract：:The phytopathogen Xylella fastidiosa causes economic losses in important agricultural crops. Xylem vessel occlusion caused by biofilm formation is the major mechanism underlying the pathogenicity of distinct strains of X. fastidiosa. Here, we provide a detailed in vitro characterization of the extracellular proteins o...

journal_title：Frontiers in microbiology

authors： Mendes JS,Santiago AS,Toledo MA,Horta MA,de Souza AA,Tasic L,de Souza AP

更新日期：2016-12-26 00:00:00

abstract：:Mycobacteria are able to form dormant cells, which survive for a long time without multiplication. The molecular mechanisms behind prolonged survival of dormant cells are not fully described. In particular, little information is known on biochemical processes which might take place in cells under dormancy. To gain ins...

journal_title：Frontiers in microbiology

authors： Trutneva K,Shleeva M,Nikitushkin V,Demina G,Kaprelyants A

更新日期：2018-09-04 00:00:00

abstract：:The sheep intestinal tract is characterized by a diverse microbial ecosystem that is vital for the host to digest diet material. The importance of gut microbiota (GM) of animals has also been widely acknowledged because of its pivotal roles in the health and well-being of animals. However, there are no relevant studie...

journal_title：Frontiers in microbiology

authors： Zhang H,Shao M,Huang H,Wang S,Ma L,Wang H,Hu L,Wei K,Zhu R

更新日期：2018-01-31 00:00:00

abstract：:The role of food in human exposure to antimicrobial-resistant bacteria is a growing food safety issue. The contribution of fruits and vegetables eaten raw to this exposure is still unclear. The evaluation of contamination levels of fruits, vegetables and the agricultural environment by third-generation cephalosporin (...

journal_title：Frontiers in microbiology

authors： Mesbah Zekar F,Granier SA,Marault M,Yaici L,Gassilloud B,Manceau C,Touati A,Millemann Y

更新日期：2017-08-24 00:00:00

abstract：:Listeria monocytogenes is a food-borne pathogen that can persist in food processing plants by forming biofilms on abiotic surfaces. The benefits that bacteria can gain from living in a biofilm, i.e., protection from environmental factors and tolerance to biocides, have been linked to the biofilm structure. Different L...

journal_title：Frontiers in microbiology

authors： Balsa-Canto E,Vilas C,López-Núñez A,Mosquera-Fernández M,Briandet R,Cabo ML,Vázquez C

更新日期：2017-11-01 00:00:00

abstract：:Three chemical epigenetic modifiers [5-azacytidine, nicotinamide, and suberoylanilide hydroxamic acid (SAHA)] were applied to induce the metabolites of Penicillium mallochii CCH01, a fungus isolated from the gut of Ectropis oblique. Metabolite profiles of P. mallochii CCH01 were obviously changed by SAHA treatment. Fo...

journal_title：Frontiers in microbiology

authors： Zhang S,Fang H,Yin C,Wei C,Hu J,Zhang Y

更新日期：2019-10-02 00:00:00

abstract：:Within the subarctic climate of Clinton Creek, Yukon, Canada, lies an abandoned and flooded open-pit asbestos mine that harbors rapidly growing microbialites. To understand their formation we completed a metagenomic community profile of the microbialites and their surrounding sediments. Assembled metagenomic data reve...

journal_title：Frontiers in microbiology

authors： White RA 3rd,Power IM,Dipple GM,Southam G,Suttle CA

更新日期：2015-09-23 00:00:00

abstract：:In some filamentous fungi, the pathways related to the oxidative stress and oxylipins production are involved both in the process of host-recognition and in the pathogenic phase. In fact, recent studies have shown that the production of oxylipins in filamentous fungi, yeasts and chromists is also related to the develo...

journal_title：Frontiers in microbiology

authors： Scarpari M,Punelli M,Scala V,Zaccaria M,Nobili C,Ludovici M,Camera E,Fabbri AA,Reverberi M,Fanelli C

更新日期：2014-02-27 00:00:00

abstract：:Legionella pneumophila is a natural intracellular bacterial parasite of free-living freshwater protozoa and an accidental human pathogen that causes Legionnaires' disease. L. pneumophila differentiates, and does it in style. Recent experimental data on L. pneumophila's differentiation point at the existence of a compl...

journal_title：Frontiers in microbiology

authors： Robertson P,Abdelhady H,Garduño RA

更新日期：2014-12-22 00:00:00

abstract：:The impact of subacute rumen acidosis (SARA) on the rumen bacterial community has been frequently studied in in vivo trials. Here we investigated whether these alterations can be mirrored by using the rumen simulation technique (RUSITEC) as an in vitro model for this disease. We hypothezised that the bacterial communi...

journal_title：Frontiers in microbiology

authors： Brede M,Orton T,Pinior B,Roch FF,Dzieciol M,Zwirzitz B,Wagner M,Breves G,Wetzels SU

更新日期：2020-08-07 00:00:00