Comparing design of experiments and optimal experimental design techniques for modelling the microbial growth rate under static environmental conditions.

Abstract:

:Building secondary models that describe the growth rate as a function of multiple environmental conditions is often very labour intensive and costly. As such, the current research aims to assist in decreasing the required experimental effort by studying the efficacy of both design of experiments (DOE) and optimal experimental designs (OED) techniques. This is the first research in predictive microbiology (i) to make a comparison of these techniques based on the (relative) model prediction uncertainty of the obtained models and (ii) to compare OED criteria for the design of experiments with static (instead of dynamic) environmental conditions. A comparison of the DOE techniques demonstrated that the inscribed central composite design and full factorial design were most suitable. Five conventional and two tailor made OED criteria were tested. The commonly used D-criterion performed best out of the conventional designs and almost equally well as the best of the dedicated criteria. Moreover, the modelling results of the D-criterion were less dependent on the experimental variability and differences in the microbial response than the two selected DOE techniques. Finally, it was proven that solving the optimisation of the D-criterion can be made more efficient by considering the sensitivities of the growth rate relative to its value as Jacobian matrix instead of the sensitivities of the cell density measurements.

journal_name

Food Microbiol

journal_title

Food microbiology

authors

Akkermans S,Nimmegeers P,Van Impe JF

doi

10.1016/j.fm.2018.05.010

subject

Has Abstract

pub_date

2018-12-01 00:00:00

pages

504-512

eissn

0740-0020

issn

1095-9998

pii

S0740-0020(18)30004-2

journal_volume

76

pub_type

杂志文章
  • Technological characterization of Geotrichum candidum strains isolated from a traditional Spanish goats' milk cheese.

    abstract::Forty-one strains of Geotrichum candidum isolated from Armada cheese, Sobado variety, were screened for their enzymatic activities, including proteolytic and lipolytic activities and aminopeptidase activity. The highest extracellular proteolytic activity was detected for 8 strains with values ranging between 2.086 and...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2011.10.003

    authors: Sacristán N,González L,Castro JM,Fresno JM,Tornadijo MA

    更新日期:2012-05-01 00:00:00

  • Selection and application of antifungal VOCs-producing yeasts as biocontrol agents of grey mould in fruits.

    abstract::Rotting caused by grey mould (Botrytis cinerea) is a concerning disease for numerous crops both pre- and postharvest stages. Application of antagonistic yeasts is a promising strategy for controlling grey mould incidence which could mitigate undesirable consequences of using synthetic fungicides. In this work, a scree...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2020.103556

    authors: Ruiz-Moyano S,Hernández A,Galvan AI,Córdoba MG,Casquete R,Serradilla MJ,Martín A

    更新日期:2020-12-01 00:00:00

  • Inactivation dynamics of Salmonella enterica, Listeria monocytogenes, and Escherichia coli O157:H7 in wash water during simulated chlorine depletion and replenishment processes.

    abstract::Maintaining effective sanitizer concentration is of critical importance for preventing pathogen survival and transference during fresh-cut produce wash operation and for ensuring the safety of finished products. However, maintaining an adequate level of sanitizer in wash water can be challenging for processors due to ...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2015.03.004

    authors: Zhou B,Luo Y,Nou X,Lyu S,Wang Q

    更新日期:2015-09-01 00:00:00

  • Biodiversity and dynamics of the bacterial community of packaged king scallop (Pecten maximus) meat during cold storage.

    abstract::The microbial biodiversity and dynamics of king scallops meat and coral during cold storage (cold chain rupture: 1/3 storage time at 4 °C followed by 2/3 at 8 °C), was assessed by combining culture-dependant and -independent methods. Products were packaged as follows: aerobic, vacuum packed and 3 different CO2/N2 modi...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2013.02.011

    authors: Coton M,Joffraud JJ,Mekhtiche L,Leroi F,Coton E

    更新日期:2013-09-01 00:00:00

  • Bacterial communities and potential spoilage markers of whole blue crab (Callinectes sapidus) stored under commercial simulated conditions.

    abstract::Bacterial communities composition using 16S Next Generation Sequencing (NGS) and Volatile Organic Compounds (VOCs) profile of whole blue crabs (Callinectes sapidus) stored at 4 and 10 °C (proper and abuse temperature) simulating real storage conditions were performed. Conventional microbiological and chemical analyses...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2019.03.011

    authors: Parlapani FF,Michailidou S,Anagnostopoulos DA,Koromilas S,Kios K,Pasentsis K,Psomopoulos F,Argiriou A,Haroutounian SA,Boziaris IS

    更新日期:2019-09-01 00:00:00

  • Occurrence of lactic acid bacteria and yeasts at species and strain level during spontaneous fermentation of mawè, a cereal dough produced in West Africa.

    abstract::Mawè is a West African spontaneous fermented cereal-based dough. Different types of mawè exist varying in type of cereal and/or production condition, with fermentations lasting 24-48 h. With the aim of obtaining a comprehensive understanding of the microbial ecology of mawè processing, a microbiological characterisati...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2018.06.005

    authors: Houngbédji M,Johansen P,Padonou SW,Akissoé N,Arneborg N,Nielsen DS,Hounhouigan DJ,Jespersen L

    更新日期:2018-12-01 00:00:00

  • Combinations of High Intensity Light Pulses and Thermosonication for the inactivation of Escherichia coli in orange juice.

    abstract::The non-thermal technologies High Intensity Light Pulses (HILP) and Thermosonication (TS) were applied alone and in combination to study their effect on Escherichia coli inactivation in orange juice. Two different energy settings were chosen in the current study, 'Low' (L) and 'High' (H), being the combinations applie...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2011.04.005

    authors: Muñoz A,Palgan I,Noci F,Morgan DJ,Cronin DA,Whyte P,Lyng JG

    更新日期:2011-09-01 00:00:00

  • Bacterial microbiota profile in gills of modified atmosphere-packaged oysters stored at 4 °C.

    abstract::As filter-feeding bivalves, oysters can accumulate microorganisms into their gills, causing spoilage and potential safety issues. This study aims to investigate the changes in the gill microbiota of oysters packed under air and modified atmospheres (MAs, 50% CO2: 50% N2, 70% CO2: 30% O2, and 50% CO2: 50% O2) during st...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2016.08.006

    authors: Chen H,Wang M,Lin X,Shi C,Liu Z

    更新日期:2017-02-01 00:00:00

  • Comparison study of the volatile profiles and microbial communities of Wuyi Qu and Gutian Qu, two major types of traditional fermentation starters of Hong Qu glutinous rice wine.

    abstract::Hong Qu, which mainly contains Monascus sp. and other microorganisms, as well as numerous microbial metabolites, is used as the fermentation starter of Hong Qu glutinous rice wine, a traditional alcoholic beverage. Two widely-used types of Hong Qu, namely Wuyi Qu (WYQ) and Gutian Qu (GTQ), were thoroughly compared for...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2017.07.019

    authors: Liu Z,Wang Z,Lv X,Zhu X,Chen L,Ni L

    更新日期:2018-02-01 00:00:00

  • Effect of Saccharomyces cerevisiae, Torulaspora delbrueckii and malolactic fermentation on fermentation kinetics and sensory property of black raspberry wines.

    abstract::Alcoholic fermentation (AF) and malolactic fermentation (MLF) both have significant influence on the production of black raspberry wine. In this study, three microbes associated with AF and MLF including S. cerevisiae, T. delbrueckii and O. oeni were used to investigate their combined effect on basic compositional, vo...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2020.103551

    authors: Liu W,Li H,Jiang D,Zhang Y,Zhang S,Sun S

    更新日期:2020-10-01 00:00:00

  • Comparison of two extraction methods for the detection of hepatitis A virus in semi-dried tomatoes and murine norovirus as a process control by duplex RT-qPCR.

    abstract::Enteric viruses are important agents of foodborne diseases. Due to their low infectious doses and low concentrations in food samples, an efficient and rapid virus concentration method is required for routine control. Because of the absence of a reliable cell culture method for most of the enteric viruses involved in o...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2012.03.007

    authors: Martin-Latil S,Hennechart-Collette C,Guillier L,Perelle S

    更新日期:2012-09-01 00:00:00

  • Analysis of the microflora in Tibetan kefir grains using denaturing gradient gel electrophoresis.

    abstract::The microflora of Tibetan kefir grains was investigated by culture- independent methods. Denaturing gradient gel electrophoresis (DGGE) of partially amplified 16S rRNA for bacteria and 26S rRNA for yeasts, followed by sequencing of the most intense bands, showed that the dominant microorganisms were Pseudomonas sp., L...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2009.04.009

    authors: Zhou J,Liu X,Jiang H,Dong M

    更新日期:2009-12-01 00:00:00

  • Prevalence and genetic characteristics of Cronobacter spp. from food and human clinical stool samples in Wenzhou, China 2008-2018.

    abstract::Pathogenic Cronobacter species are responsible for life-threatening illness in neonates. A ten-year comprehensive survey was conducted to examine the population structure and antimicrobial resistant patterns of Cronobacter isolates from food (n = 78) and clinical (n = 12) sources in Wenzhou, China. A total of 90 (4.4%...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2020.103432

    authors: Li Y,Zhang Y,Zhang L,Hu Y,Hong C,Xie A,Wu Y,Shangguan Z,Zhou B,Fang L,Mei L

    更新日期:2020-08-01 00:00:00

  • Leuconostoc strains isolated from dairy products: Response against food stress conditions.

    abstract::A systematic study about the intrinsic resistance of 29 strains (26 autochthonous and 3 commercial ones), belonging to Leuconostoc genus, against diverse stress factors (thermal, acidic, alkaline, osmotic and oxidative) commonly present at industrial or conservation processes were evaluated. Exhaustive result processi...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2017.04.001

    authors: D'Angelo L,Cicotello J,Zago M,Guglielmotti D,Quiberoni A,Suárez V

    更新日期:2017-09-01 00:00:00

  • Detection of enterohaemorrhagic Escherichia coli in food by droplet digital PCR to detect simultaneous virulence factors in a single genome.

    abstract::Shiga toxin producing E. coli are a problem for food producers. STEC's require a combination of virulence factors to cause disease, so ideally detection techniques should detect the presence of multiple virulence factors in a single cell directly from food. Droplet Digital PCR (ddPCR) is commonly used to quantify the ...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2020.103466

    authors: He L,Simpson DJ,Gänzle MG

    更新日期:2020-09-01 00:00:00

  • Assessment of minimum oxygen concentrations for the growth of heat-resistant moulds.

    abstract::This study evaluated the effect of both gaseous and dissolved oxygen (O2) concentration (0 - 21%) on the growth of six heat-resistant moulds (HRMs) (Neosartorya and Byssochlamys spp.) previously isolated from high-acid fruit products. The study was performed in acidified potato dextrose agar (aPDA) with all six HRMs a...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2019.103243

    authors: Santos JLPD,Samapundo S,Pimentel GC,Van Impe J,Sant'Ana AS,Devlieghere F

    更新日期:2019-12-01 00:00:00

  • Predictive model for growth of Clostridium perfringens during cooling of cooked uncured meat and poultry.

    abstract::Comparison of Clostridium perfringens spore germination and outgrowth in cooked uncured products during cooling for different meat species is presented. Cooked, uncured product was inoculated with C. perfringens spores and vacuum packaged. For the isothermal experiments, all samples were incubated in a water bath stab...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2010.05.013

    authors: Juneja VK,Marks H,Huang L,Thippareddi H

    更新日期:2011-06-01 00:00:00

  • Transfer of foodborne pathogens during mechanical slicing and their inactivation by levulinic acid-based sanitizer on slicers.

    abstract::This study investigated the degree of cross-contamination between deli foods and slicers by Listeria monocytogenes, Salmonella, and Escherichia coli O157:H7, and their inactivation by levulinic acid (LA) plus sodium dodecyl sulfate (SDS) on slicers. The transfer rate of pathogens at 5 locations on the contaminated sli...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2013.10.004

    authors: Chen D,Zhao T,Doyle MP

    更新日期:2014-04-01 00:00:00

  • Microbiological characteristics of kumis, a traditional fermented Colombian milk, with particular emphasis on enterococci population.

    abstract::Kumis is a traditional fermented cow milk produced and consumed in South West Colombia. The main objective of this research was to studied the enterococcal population, present in 13 kumis samples traditionally manufactured, for their role as beneficial organisms or opportunistic pathogens. The molecular identification...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2011.02.006

    authors: Chaves-López C,Serio A,Martuscelli M,Paparella A,Osorio-Cadavid E,Suzzi G

    更新日期:2011-08-01 00:00:00

  • Correlation between autochthonous microbial communities and key odorants during the fermentation of red pepper (Capsicum annuum L.).

    abstract::High-throughput sequencing and gas chromatography-mass spectrometry (GC-MS) were used to investigate changes in bacterial and fungal communities and volatile flavor compounds during a 32-day fermentation process of red pepper (Capsicum annuum L.). Key odorants were identified by olfactometry combined with GC-MS. Sixte...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2020.103510

    authors: Xu X,Wu B,Zhao W,Pang X,Lao F,Liao X,Wu J

    更新日期:2020-10-01 00:00:00

  • Inhibition of Listeria innocua growth by antimicrobial-producing lactic acid cultures in vacuum-packed cold-smoked salmon.

    abstract::The biopreservative potential of three antimicrobial-producing lactic acid bacteria strains was evaluated on cold-smoked salmon. Lactobacillus casei, Lactobacillus plantarum and Carnobacterium piscicola were added singly or in association to cold-smoked salmon, artificially contaminated with Listeria innocua and store...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2005.12.002

    authors: Vescovo M,Scolari G,Zacconi C

    更新日期:2006-10-01 00:00:00

  • Macedovicin, the second food-grade lantibiotic produced by Streptococcus macedonicus ACA-DC 198.

    abstract::Streptococcus macedonicus ACA-DC 198 was found to produce a second lantibiotic named macedovicin in addition to macedocin. Macedovicin was purified to homogeneity and mass spectrometric analysis identified a peptide of approximately 3.4 kDa. Partial N-terminal sequence analysis and tandem mass spectrometry revealed th...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2012.09.008

    authors: Georgalaki M,Papadimitriou K,Anastasiou R,Pot B,Van Driessche G,Devreese B,Tsakalidou E

    更新日期:2013-02-01 00:00:00

  • Sourdough products for convenient use in baking.

    abstract::Sourdough fermentations require a specific knowledge on the effects of process parameters, raw materials and micro-organisms in order to obtain a specific, reproducible sourdough and bread quality. This knowledge is not necessarily available in bakeries. Sourdough starter cultures, either active sourdoughs (Reinzuchts...

    journal_title:Food microbiology

    pub_type: 杂志文章,评审

    doi:10.1016/j.fm.2006.07.010

    authors: Brandt MJ

    更新日期:2007-04-01 00:00:00

  • Harvesting yeast (Saccharomyces cerevisiae) at different physiological phases significantly affects its functionality in bread dough fermentation.

    abstract::Fermentation of sugars into CO2, ethanol and secondary metabolites by baker's yeast (Saccharomyces cerevisiae) during bread making leads to leavening of dough and changes in dough rheology. The aim of this study was to increase our understanding of the impact of yeast on dough related aspects by investigating the effe...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2013.11.013

    authors: Rezaei MN,Dornez E,Jacobs P,Parsi A,Verstrepen KJ,Courtin CM

    更新日期:2014-05-01 00:00:00

  • Biofilm formation and exopolysaccharide (EPS) production by Cronobacter sakazakii depending on environmental conditions.

    abstract::Biofilm matrices are formed largely of extracellular polymeric substance (EPS). This study was conducted to investigate biofilm formation and EPS production by Cronobacter sakazakii under various conditions (media, nutrition, and relative humidity (RH)) by quantification of EPS and cell populations, Field Emission Sca...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2012.11.008

    authors: Jung JH,Choi NY,Lee SY

    更新日期:2013-05-01 00:00:00

  • Combined treatments of high-pressure with the lactoperoxidase system or lactoferrin on the inactivation of Listeria monocytogenes, Salmonella Enteritidis and Escherichia coli O157:H7 in beef carpaccio.

    abstract::The effect of high hydrostatic pressure (HHP) treatments in combination with the lactoperoxidase system (LPOS) or activated lactoferrin (ALF) on Listeria monocytogenes, Salmonella enterica subsp. enterica serovar Enteritidis and Escherichia coli O157:H7 was investigated in cured beef carpaccio stored at 8 °C or 22 °C ...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2014.01.010

    authors: Bravo D,de Alba M,Medina M

    更新日期:2014-08-01 00:00:00

  • Ultraviolet-C resistance of selected spoilage yeasts in orange juice.

    abstract::This study determined the ultraviolet-C (UV-C) dose necessary to reduce 90% population (DUV-C) of 17 spoilage yeasts and their composited inoculum in orange juice (pH 3.71, 11.60 °Brix, 0.55% citric acid, 2.46% w/v insoluble solids). Growth parameters of all test yeasts were first established to standardize the growth...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2018.10.003

    authors: Feliciano RJ,Estilo EEC,Nakano H,Gabriel AA

    更新日期:2019-04-01 00:00:00

  • Identification and characterization of yeast isolated from the elaboration of seasoned green table olives.

    abstract::The purpose of this study was to investigate the yeast population during the processing of green table olives. In the fresh olives, yeast were found at concentrations of around 3.0 log cfu/g, with Cryptococcus spp. being predominant. In the brine, the yeast concentrations were greater than 4.9 log cfu/ml, with Pichia ...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2006.07.022

    authors: Hernández A,Martín A,Aranda E,Pérez-Nevado F,Córdoba MG

    更新日期:2007-06-01 00:00:00

  • Exploitation of grape marc as functional substrate for lactic acid bacteria and bifidobacteria growth and enhanced antioxidant activity.

    abstract::This study aimed at using grape marc for the growth of lactic acid bacteria and bifidobacteria with the perspective of producing a functional ingredient having antioxidant activity. Lactobacillus plantarum 12A and PU1, Lactobacillus paracasei 14A, and Bifidobacterium breve 15A showed the ability to grow on grape marc ...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2017.01.019

    authors: Campanella D,Rizzello CG,Fasciano C,Gambacorta G,Pinto D,Marzani B,Scarano N,De Angelis M,Gobbetti M

    更新日期:2017-08-01 00:00:00

  • Behaviour of Aspergillus flavus and Fusarium graminearum on rice as affected by degree of milling, temperature, and relative humidity during storage.

    abstract::We investigated the survival and growth patterns of Aspergillus flavus and Fusarium graminearum, as well as mycotoxin production, on Korean rice as affected by the degree of milling (rough, brown, and white rice) and storage conditions (21 °C/85% relative humidity [RH], 21 °C/97% RH, and 30 °C/85% RH). When rice was s...

    journal_title:Food microbiology

    pub_type: 杂志文章

    doi:10.1016/j.fm.2014.08.019

    authors: Choi S,Jun H,Bang J,Chung SH,Kim Y,Kim BS,Kim H,Beuchat LR,Ryu JH

    更新日期:2015-04-01 00:00:00