A functional polymorphism in THBS2 that affects alternative splicing and MMP binding is associated with lumbar-disc herniation.

Abstract:

:Lumbar-disc herniation (LDH), one of the most common musculoskeletal diseases, has strong genetic determinants. Recently, several genes that encode extracellular matrix (ECM) proteins in the intervertebral disc have been reported to associate with LDH. Thrombospondins (THBSs) 1 and 2 are good candidates for the LDH susceptibility gene: They are intervertebral disc ECM proteins that regulate the effective levels of matrix metalloproteinases (MMPs) 2 and 9, which are key effectors of ECM remodeling. Here, we report that THBS2 is associated with LDH in Japanese populations. An intronic SNP in THBS2 (IVS10-8C --> T; rs9406328) showed significant association (p = 0.0000028) with LDH in two independent Japanese populations. This SNP, located in a polypyrimidine tract upstream of the 3' splice site of intron 10, exerts allelic differences on exon 11 skipping rates in vivo, with the susceptibility allele showing increased skipping. Skipping of exon 11 results in decreased THBS2 interaction with MMP2 and MMP9. Further, a missense SNP in MMP9 (Q279R; rs17576) is also strongly associated with LDH in the Japanese population (p = 0.00049) and shows a combinatorial effect with THBS2 (odds ratio 3.03, 95% confidence interval 1.58-5.77). Thus, a splicing-affecting SNP in THBS2 and a missense SNP in MMP9 are associated with susceptibility to LDH. Our data indicate that regulation of intervertebral disc ECM metabolism by the THBS2-MMP system plays an essential role in the etiology and pathogenesis of LDH.

journal_name

Am J Hum Genet

authors

Hirose Y,Chiba K,Karasugi T,Nakajima M,Kawaguchi Y,Mikami Y,Furuichi T,Mio F,Miyake A,Miyamoto T,Ozaki K,Takahashi A,Mizuta H,Kubo T,Kimura T,Tanaka T,Toyama Y,Ikegawa S

doi

10.1016/j.ajhg.2008.03.013

subject

Has Abstract

pub_date

2008-05-01 00:00:00

pages

1122-9

issue

5

eissn

0002-9297

issn

1537-6605

pii

S0002-9297(08)00223-1

journal_volume

82

pub_type

杂志文章
  • CHARGE and Kabuki Syndromes: Gene-Specific DNA Methylation Signatures Identify Epigenetic Mechanisms Linking These Clinically Overlapping Conditions.

    abstract::Epigenetic dysregulation has emerged as a recurring mechanism in the etiology of neurodevelopmental disorders. Two such disorders, CHARGE and Kabuki syndromes, result from loss of function mutations in chromodomain helicase DNA-binding protein 7 (CHD7LOF) and lysine (K) methyltransferase 2D (KMT2DLOF), respectively. A...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2017.04.004

    authors: Butcher DT,Cytrynbaum C,Turinsky AL,Siu MT,Inbar-Feigenberg M,Mendoza-Londono R,Chitayat D,Walker S,Machado J,Caluseriu O,Dupuis L,Grafodatskaya D,Reardon W,Gilbert-Dussardier B,Verloes A,Bilan F,Milunsky JM,Basran R,

    更新日期:2017-05-04 00:00:00

  • Gene-centric meta-analysis in 87,736 individuals of European ancestry identifies multiple blood-pressure-related loci.

    abstract::Blood pressure (BP) is a heritable risk factor for cardiovascular disease. To investigate genetic associations with systolic BP (SBP), diastolic BP (DBP), mean arterial pressure (MAP), and pulse pressure (PP), we genotyped ~50,000 SNPs in up to 87,736 individuals of European ancestry and combined these in a meta-analy...

    journal_title:American journal of human genetics

    pub_type: 杂志文章,meta分析

    doi:10.1016/j.ajhg.2013.12.016

    authors: Tragante V,Barnes MR,Ganesh SK,Lanktree MB,Guo W,Franceschini N,Smith EN,Johnson T,Holmes MV,Padmanabhan S,Karczewski KJ,Almoguera B,Barnard J,Baumert J,Chang YP,Elbers CC,Farrall M,Fischer ME,Gaunt TR,Gho JM,Gieg

    更新日期:2014-03-06 00:00:00

  • A mutation in PNPT1, encoding mitochondrial-RNA-import protein PNPase, causes hereditary hearing loss.

    abstract::A subset of nuclear-encoded RNAs has to be imported into mitochondria for the proper replication and transcription of the mitochondrial genome and, hence, for proper mitochondrial function. Polynucleotide phosphorylase (PNPase or PNPT1) is one of the very few components known to be involved in this poorly characterize...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2012.09.002

    authors: von Ameln S,Wang G,Boulouiz R,Rutherford MA,Smith GM,Li Y,Pogoda HM,Nürnberg G,Stiller B,Volk AE,Borck G,Hong JS,Goodyear RJ,Abidi O,Nürnberg P,Hofmann K,Richardson GP,Hammerschmidt M,Moser T,Wollnik B,Koehler CM

    更新日期:2012-11-02 00:00:00

  • Consistent linkage of the long-QT syndrome to the Harvey ras-1 locus on chromosome 11.

    abstract::The long-QT syndrome (LQT; Ward-Romano syndrome) is a cardiac disorder that is inherited as an autosomal dominant trait. Affected family members suffer from recurrent syncope and sudden death due to ventricular arrhythmias. Recently, we identified a DNA marker on the short arm of chromosome 11 (the Harvey ras-1 locus ...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Keating M,Dunn C,Atkinson D,Timothy K,Vincent GM,Leppert M

    更新日期:1991-12-01 00:00:00

  • Parental somatic and germ-line mosaicism for a multiexon deletion with unusual endpoints in a type III collagen (COL3A1) allele produces Ehlers-Danlos syndrome type IV in the heterozygous offspring.

    abstract::Ehlers-Danlos syndrome (EDS) type IV is a dominantly inherited disorder that results from mutations in the type III collagen gene (COL3A1). We studied the structure of the COL3A1 gene of an individual with EDS type IV and that of her phenotypically normal parents. The proband was heterozygous for a 2-kb deletion in CO...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Milewicz DM,Witz AM,Smith AC,Manchester DK,Waldstein G,Byers PH

    更新日期:1993-07-01 00:00:00

  • A PEX6-defective peroxisomal biogenesis disorder with severe phenotype in an infant, versus mild phenotype resembling Usher syndrome in the affected parents.

    abstract::Sensorineural deafness and retinitis pigmentosa (RP) are the hallmarks of Usher syndrome (USH) but are also prominent features in peroxisomal biogenesis defects (PBDs); both are autosomal recessively inherited. The firstborn son of unrelated parents, who both had sensorineural deafness and RP diagnosed as USH, present...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/339766

    authors: Raas-Rothschild A,Wanders RJ,Mooijer PA,Gootjes J,Waterham HR,Gutman A,Suzuki Y,Shimozawa N,Kondo N,Eshel G,Espeel M,Roels F,Korman SH

    更新日期:2002-04-01 00:00:00

  • Inferring genetic ancestry: opportunities, challenges, and implications.

    abstract::Increasing public interest in direct-to-consumer (DTC) genetic ancestry testing has been accompanied by growing concern about issues ranging from the personal and societal implications of the testing to the scientific validity of ancestry inference. The very concept of "ancestry" is subject to misunderstanding in both...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2010.03.011

    authors: Royal CD,Novembre J,Fullerton SM,Goldstein DB,Long JC,Bamshad MJ,Clark AG

    更新日期:2010-05-14 00:00:00

  • New founder haplotypes at the myotonic dystrophy locus in southern Africa.

    abstract::The association between normal alleles at the CTG repeat and two nearby polymorphisms in the myotonin protein kinase gene, the Alu insertion/deletion polymorphism and the myotonic dystrophy kinase (DMK)(G/T) intron 9/HinfI polymorphism, has been analyzed in South African Negroids, a population in which myotonic dystro...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Goldman A,Ramsay M,Jenkins T

    更新日期:1995-06-01 00:00:00

  • Genotyping Array Design and Data Quality Control in the Million Veteran Program.

    abstract::The Million Veteran Program (MVP), initiated by the Department of Veterans Affairs (VA), aims to collect biosamples with consent from at least one million veterans. Presently, blood samples have been collected from over 800,000 enrolled participants. The size and diversity of the MVP cohort, as well as the availabilit...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2020.03.004

    authors: Hunter-Zinck H,Shi Y,Li M,Gorman BR,Ji SG,Sun N,Webster T,Liem A,Hsieh P,Devineni P,Karnam P,Gong X,Radhakrishnan L,Schmidt J,Assimes TL,Huang J,Pan C,Humphries D,Brophy M,Moser J,Muralidhar S,Huang GD,Przygod

    更新日期:2020-04-02 00:00:00

  • Multiple independent molecular etiology for limb-girdle muscular dystrophy type 2A patients from various geographical origins.

    abstract::Limb-girdle muscular dystrophies (LGMDs) are a group of neuromuscular diseases presenting great clinical heterogeneity. Mutations in CANP3, the gene encoding muscle-specific calpain, were used to identify this gene as the genetic site responsible for autosomal recessive LGMD type 2A (LGMD2A; MIM 253600). Analyses of t...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Richard I,Brenguier L,Dinçer P,Roudaut C,Bady B,Burgunder JM,Chemaly R,Garcia CA,Halaby G,Jackson CE,Kurnit DM,Lefranc G,Legum C,Loiselet J,Merlini L,Nivelon-Chevallier A,Ollagnon-Roman E,Restagno G,Topaloglu H,Beck

    更新日期:1997-05-01 00:00:00

  • A highly polymorphic locus in human DNA revealed by probes from cosmid 1-5 maps to chromosome 2q35----37.

    abstract::The highly polymorphic locus D2S3 is revealed by three single-copy probes from cosmid C1-5. These probes, 1-30, 1-32, and 2-96, collectively reveal seven restriction fragment length polymorphisms. Fifty-three of 56 unrelated individuals (93%) were heterozygous at one or more of the seven loci, making the compound locu...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Litt M,Bruns GA,Sheehy R,Magenis RE

    更新日期:1986-03-01 00:00:00

  • The novel neuronal ceroid lipofuscinosis gene MFSD8 encodes a putative lysosomal transporter.

    abstract::The late-infantile-onset forms are the most genetically heterogeneous group among the autosomal recessively inherited neurodegenerative disorders, the neuronal ceroid lipofuscinoses (NCLs). The Turkish variant was initially considered to be a distinct genetic entity, with clinical presentation similar to that of other...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/518902

    authors: Siintola E,Topcu M,Aula N,Lohi H,Minassian BA,Paterson AD,Liu XQ,Wilson C,Lahtinen U,Anttonen AK,Lehesjoki AE

    更新日期:2007-07-01 00:00:00

  • Different patterns of X inactivation in MZ twins discordant for red-green color-vision deficiency.

    abstract::Two female identical twins who were clinically normal were obligatory heterozygotes for X-linked deuteranomaly associated with a green-red fusion gene derived from their deuteranomalous father. On anomaloscopy, one of the twins was phenotypically deuteranomalous while the other had normal color vision. The color visio...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Jørgensen AL,Philip J,Raskind WH,Matsushita M,Christensen B,Dreyer V,Motulsky AG

    更新日期:1992-08-01 00:00:00

  • Type 2 NF1 deletions are highly unusual by virtue of the absence of nonallelic homologous recombination hotspots and an apparent preference for female mitotic recombination.

    abstract::Approximately 5% of patients with neurofibromatosis type 1 (NF1) exhibit gross deletions that encompass the NF1 gene and its flanking regions. The breakpoints of the common 1.4-Mb (type 1) deletions are located within low-copy repeats (NF1-REPs) and cluster within a 3.4-kb hotspot of nonallelic homologous recombinatio...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/522089

    authors: Steinmann K,Cooper DN,Kluwe L,Chuzhanova NA,Senger C,Serra E,Lazaro C,Gilaberte M,Wimmer K,Mautner VF,Kehrer-Sawatzki H

    更新日期:2007-12-01 00:00:00

  • Mitochondrial dysfunction in idiopathic Parkinson disease.

    abstract::Disordered mitochondrial metabolism may play an important role in a number of idiopathic neurodegenerative disorders. The question of mitochondrial dysfunction is particularly attractive in the case of idiopathic Parkinson disease (PD), since Vyas et al. recognized in the 1980s that the parkinsonism-inducing compound ...

    journal_title:American journal of human genetics

    pub_type: 杂志文章,评审

    doi:10.1086/301812

    authors: Parker WD Jr,Swerdlow RH

    更新日期:1998-04-01 00:00:00

  • Genetic polymorphism of human serum ribonuclease I (RNase I).

    abstract::One of the human urinary ribonucleases (RNases) was isolated and purified to homogeneity (SDS-PAGE) by means of a series of column chromatographies. The enzyme, designated RNase 1, is a glycoprotein with a molecular weight of approximately 16,000. Rabbit antibody to the purified RNase 1 reacted with human urine and se...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Yasuda T,Sato W,Mizuta K,Kishi K

    更新日期:1988-04-01 00:00:00

  • Identification of a new locus for a peculiar form of congenital muscular dystrophy with early rigidity of the spine, on chromosome 1p35-36.

    abstract::Classical congenital muscular dystrophies (CMDs) are autosomal recessive neuromuscular disorders characterized by early onset of hypotonia and weakness, atrophy of limbs and trunk muscles, contractures, and dystrophic changes in the muscle biopsy. So far, only one gene, LAMA2 (6q2), which encodes the laminin alpha2 ch...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/301882

    authors: Moghadaszadeh B,Desguerre I,Topaloglu H,Muntoni F,Pavek S,Sewry C,Mayer M,Fardeau M,Tomé FM,Guicheney P

    更新日期:1998-06-01 00:00:00

  • The tyrosinase-positive oculocutaneous albinism gene shows locus homogeneity on chromosome 15q11-q13 and evidence of multiple mutations in southern African negroids.

    abstract::Tyrosinase-positive oculocutaneous albinism (ty-pos OCA) is an autosomal recessive disorder of the melanin pigmentary system. South African ty-pos OCA individuals occur with two distinct phenotypes, with or without darkly pigmented patches (ephelides, or dendritic freckles) on exposed areas of the skin. These phenotyp...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Kedda MA,Stevens G,Manga P,Viljoen C,Jenkins T,Ramsay M

    更新日期:1994-06-01 00:00:00

  • Hereditary polyposis coli. III. Genetic and evolutionary fitness.

    abstract::The numbers of progeny born to 355 patients with heritable polyposis of the colon and to 315 related, but normal, subjects, all old enough to have completed their families, are presented, as well as data on 432 subjects still young enough to have more children. Two main indices are used: mean family size ("genetic fit...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Murphy EA,Krush AJ,Dietz M,Rohde CA

    更新日期:1980-09-01 00:00:00

  • Exclusion of the APC gene as the cause of a variant form of familial adenomatous polyposis (FAP)

    abstract::Familial adenomatous polyposis (FAP) is a premalignant disease inherited as an autosomal dominant trait, characterized by hundreds to thousands of polyps in the colorectal tract. Recently, the syndrome has been shown to be caused by mutations in the APC (adenomatous polyposis coli) gene located on chromosome 5q21. We ...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Stella A,Resta N,Gentile M,Susca F,Mareni C,Montera MP,Guanti G

    更新日期:1993-11-01 00:00:00

  • Evidence for the close linkage between lymphocyte cytosol polypeptide with molecular weight of 64,000 (LCP1) and esterase D.

    abstract::The genetic linkage of the loci for lymphocyte cytosol polypeptide with molecular weight of 64,000 (LCP1) and esterase (ESD) were examined by two-dimensional gel electrophoresis using blood from four informative families. No recombinants were observed in the four families totaling 17 children, giving a summed lod scor...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Kondo I,Hamaguchi H

    更新日期:1985-11-01 00:00:00

  • DVL3 Alleles Resulting in a -1 Frameshift of the Last Exon Mediate Autosomal-Dominant Robinow Syndrome.

    abstract::Robinow syndrome is a rare congenital disorder characterized by mesomelic limb shortening, genital hypoplasia, and distinctive facial features. Recent reports have identified, in individuals with dominant Robinow syndrome, a specific type of variant characterized by being uniformly located in the penultimate exon of D...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2016.01.005

    authors: White JJ,Mazzeu JF,Hoischen A,Bayram Y,Withers M,Gezdirici A,Kimonis V,Steehouwer M,Jhangiani SN,Muzny DM,Gibbs RA,Baylor-Hopkins Center for Mendelian Genomics.,van Bon BWM,Sutton VR,Lupski JR,Brunner HG,Carvalho CMB

    更新日期:2016-03-03 00:00:00

  • Comparative linkage-disequilibrium analysis of the beta-globin hotspot in primates.

    abstract::Recombination rates vary both across the genome and between different species, but little information is available about the temporal and physical scales over which such rates change. To shed light on these questions, we performed a high-resolution analysis of a genomic region within the beta-globin gene cluster that ...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/380311

    authors: Wall JD,Frisse LA,Hudson RR,Di Rienzo A

    更新日期:2003-12-01 00:00:00

  • Constitutive activation of the calcium sensor STIM1 causes tubular-aggregate myopathy.

    abstract::Tubular aggregates are regular arrays of membrane tubules accumulating in muscle with age. They are found as secondary features in several muscle disorders, including alcohol- and drug-induced myopathies, exercise-induced cramps, and inherited myasthenia, but also exist as a pure genetic form characterized by slowly p...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2012.12.007

    authors: Böhm J,Chevessier F,Maues De Paula A,Koch C,Attarian S,Feger C,Hantaï D,Laforêt P,Ghorab K,Vallat JM,Fardeau M,Figarella-Branger D,Pouget J,Romero NB,Koch M,Ebel C,Levy N,Krahn M,Eymard B,Bartoli M,Laporte J

    更新日期:2013-02-07 00:00:00

  • A positive modifier of spinal muscular atrophy in the SMN2 gene.

    abstract::Spinal muscular atrophy (SMA) is a common autosomal-recessive motor neuron disease caused by the homozygous loss of the SMN1 gene. A nearly identical gene, SMN2, has been shown to decrease the severity of SMA in a dose-dependent manner. However SMN2 is not the sole phenotypic modifier, because there are discrepant SMA...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2009.08.002

    authors: Prior TW,Krainer AR,Hua Y,Swoboda KJ,Snyder PC,Bridgeman SJ,Burghes AH,Kissel JT

    更新日期:2009-09-01 00:00:00

  • A subset-based approach improves power and interpretation for the combined analysis of genetic association studies of heterogeneous traits.

    abstract::Pooling genome-wide association studies (GWASs) increases power but also poses methodological challenges because studies are often heterogeneous. For example, combining GWASs of related but distinct traits can provide promising directions for the discovery of loci with small but common pleiotropic effects. Classical a...

    journal_title:American journal of human genetics

    pub_type: 杂志文章,meta分析

    doi:10.1016/j.ajhg.2012.03.015

    authors: Bhattacharjee S,Rajaraman P,Jacobs KB,Wheeler WA,Melin BS,Hartge P,GliomaScan Consortium.,Yeager M,Chung CC,Chanock SJ,Chatterjee N

    更新日期:2012-05-04 00:00:00

  • A novel syndrome of episodic muscle weakness maps to xp22.3.

    abstract::We describe a family with a novel disorder characterized by episodic muscle weakness and X-linked inheritance. Eight males in three generations demonstrate the characteristic features of the disorder. Episodes of severe muscle weakness are typically precipitated by febrile illness and affect the facial and extraocular...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/302588

    authors: Ryan MM,Taylor P,Donald JA,Ouvrier RA,Morgan G,Danta G,Buckley MF,North KN

    更新日期:1999-10-01 00:00:00

  • Detection of heterozygotes in maple-syrup-urine disease: measurements of branched-chain alpha-ketoacid dehydrogenase and its components in cell cultures.

    abstract::To detect heterozygotes for maple-syrup-urine disease (MSUD), activities of branched-chain-alpha-ketoacid (BCKA) dehydrogenase and its components in skin fibroblasts of two obligatory heterozygotes and amnion cells of a fetus at risk were measured. Intact heterozygous cells were found to decarboxylate [1-14C] alpha-ke...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:

    authors: Chuang DT,Ku LS,Kerr DS,Cox RP

    更新日期:1982-05-01 00:00:00

  • Chinese geneticists' views of ethical issues in genetic testing and screening: evidence for eugenics in China.

    abstract::To identify Chinese geneticists' views of ethical issues in genetic testing and screening, a national survey was conducted. Of 402 Chinese geneticists asked to participate, 255 (63%) returned by mail anonymous questionnaires. The majority of respondents thought that genetic testing should be offered in the workplace f...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1086/302020

    authors: Mao X

    更新日期:1998-09-01 00:00:00

  • Apigenin as a Candidate Prenatal Treatment for Trisomy 21: Effects in Human Amniocytes and the Ts1Cje Mouse Model.

    abstract::Human fetuses with trisomy 21 (T21) have atypical brain development that is apparent sonographically in the second trimester. We hypothesize that by analyzing and integrating dysregulated gene expression and pathways common to humans with Down syndrome (DS) and mouse models we can discover novel targets for prenatal t...

    journal_title:American journal of human genetics

    pub_type: 杂志文章

    doi:10.1016/j.ajhg.2020.10.001

    authors: Guedj F,Siegel AE,Pennings JLA,Alsebaa F,Massingham LJ,Tantravahi U,Bianchi DW

    更新日期:2020-11-05 00:00:00